Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07365

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07360 and RR42_RS07365 are separated by 429 nucleotidesRR42_RS07365 and RR42_RS07370 are separated by 165 nucleotides RR42_RS07360: RR42_RS07360 - ATPase, at 1,569,604 to 1,572,192 _RS07360 RR42_RS07365: RR42_RS07365 - pyruvate dehydrogenase, at 1,572,622 to 1,575,309 _RS07365 RR42_RS07370: RR42_RS07370 - dihydrolipoamide acetyltransferase, at 1,575,475 to 1,577,139 _RS07370 Position (kb) 1572 1573 1574 1575 1576Strain fitness (log2 ratio) -3 -2 -1 0 1at 1572.359 kb on + strandat 1572.364 kb on + strandat 1572.960 kb on + strand, within RR42_RS07365at 1573.249 kb on + strand, within RR42_RS07365at 1573.951 kb on + strand, within RR42_RS07365at 1573.988 kb on - strand, within RR42_RS07365at 1574.308 kb on + strand, within RR42_RS07365at 1574.699 kb on - strand, within RR42_RS07365at 1574.725 kb on + strand, within RR42_RS07365at 1575.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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1,572,359 + +0.3
1,572,364 + -0.5
1,572,960 + RR42_RS07365 0.13 -1.9
1,573,249 + RR42_RS07365 0.23 -1.9
1,573,951 + RR42_RS07365 0.49 -2.8
1,573,988 - RR42_RS07365 0.51 -1.1
1,574,308 + RR42_RS07365 0.63 -2.3
1,574,699 - RR42_RS07365 0.77 -1.4
1,574,725 + RR42_RS07365 0.78 -1.7
1,575,307 + +0.6

Or see this region's nucleotide sequence