Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06895

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06885 and RR42_RS06890 overlap by 4 nucleotidesRR42_RS06890 and RR42_RS06895 are separated by 13 nucleotidesRR42_RS06895 and RR42_RS06900 overlap by 4 nucleotidesRR42_RS06900 and RR42_RS06905 are separated by 14 nucleotidesRR42_RS06905 and RR42_RS06910 overlap by 4 nucleotides RR42_RS06885: RR42_RS06885 - hypothetical protein, at 1,484,968 to 1,485,171 _RS06885 RR42_RS06890: RR42_RS06890 - hypothetical protein, at 1,485,168 to 1,485,446 _RS06890 RR42_RS06895: RR42_RS06895 - hypothetical protein, at 1,485,460 to 1,485,849 _RS06895 RR42_RS06900: RR42_RS06900 - hypothetical protein, at 1,485,846 to 1,486,346 _RS06900 RR42_RS06905: RR42_RS06905 - hypothetical protein, at 1,486,361 to 1,486,654 _RS06905 RR42_RS06910: RR42_RS06910 - hypothetical protein, at 1,486,651 to 1,486,926 _RS06910 Position (kb) 1485 1486Strain fitness (log2 ratio) -2 -1 0 1at 1484.692 kb on - strandat 1484.692 kb on - strandat 1484.692 kb on - strandat 1484.962 kb on - strandat 1485.143 kb on - strand, within RR42_RS06885at 1485.143 kb on - strand, within RR42_RS06885at 1485.294 kb on - strand, within RR42_RS06890at 1485.474 kb on - strandat 1485.507 kb on - strand, within RR42_RS06895at 1485.692 kb on - strand, within RR42_RS06895at 1485.725 kb on - strand, within RR42_RS06895at 1485.829 kb on - strandat 1485.997 kb on - strand, within RR42_RS06900at 1485.997 kb on - strand, within RR42_RS06900at 1486.024 kb on - strand, within RR42_RS06900at 1486.024 kb on - strand, within RR42_RS06900at 1486.179 kb on - strand, within RR42_RS06900at 1486.233 kb on - strand, within RR42_RS06900at 1486.479 kb on - strand, within RR42_RS06905at 1486.744 kb on - strand, within RR42_RS06910at 1486.744 kb on - strand, within RR42_RS06910at 1486.835 kb on - strand, within RR42_RS06910at 1486.835 kb on - strand, within RR42_RS06910

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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1,484,692 - +1.4
1,484,692 - -0.1
1,484,692 - -0.2
1,484,962 - +1.4
1,485,143 - RR42_RS06885 0.86 +0.9
1,485,143 - RR42_RS06885 0.86 -2.3
1,485,294 - RR42_RS06890 0.45 +0.3
1,485,474 - -0.4
1,485,507 - RR42_RS06895 0.12 -0.9
1,485,692 - RR42_RS06895 0.59 -1.1
1,485,725 - RR42_RS06895 0.68 -0.6
1,485,829 - -1.7
1,485,997 - RR42_RS06900 0.30 -0.1
1,485,997 - RR42_RS06900 0.30 +0.1
1,486,024 - RR42_RS06900 0.36 -0.5
1,486,024 - RR42_RS06900 0.36 +0.4
1,486,179 - RR42_RS06900 0.66 +0.7
1,486,233 - RR42_RS06900 0.77 +0.5
1,486,479 - RR42_RS06905 0.40 +0.1
1,486,744 - RR42_RS06910 0.34 +0.2
1,486,744 - RR42_RS06910 0.34 +0.1
1,486,835 - RR42_RS06910 0.67 -2.0
1,486,835 - RR42_RS06910 0.67 +0.7

Or see this region's nucleotide sequence