Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06790

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
1,469,710	-		RR42_RS06780	0.55	+0.9
1,469,830	-		RR42_RS06780	0.64	+0.4
1,469,830	-		RR42_RS06780	0.64	+0.1
1,469,830	-		RR42_RS06780	0.64	+0.1
1,469,907	+		RR42_RS06780	0.70	+0.2
1,469,982	-		RR42_RS06780	0.76	+0.2
1,470,183	+				-0.5
1,470,196	+				-0.0
1,470,233	+				+3.2
1,470,234	-				+0.7
1,470,263	+				-0.1
1,470,401	-		RR42_RS06785	0.28	-1.1
1,470,404	+		RR42_RS06785	0.29	+0.6
1,470,405	-		RR42_RS06785	0.30	+0.3
1,470,405	-		RR42_RS06785	0.30	-0.1
1,470,660	+				-0.2
1,470,661	-				-0.4
1,470,677	+				+1.0
1,470,677	+				+0.5
1,470,678	-				+0.4
1,470,678	-				+0.3
1,470,678	-				-2.4
1,470,693	+				-0.1
1,470,957	-		RR42_RS06790	0.17	+1.9
1,470,957	-		RR42_RS06790	0.17	-0.0
1,471,085	+		RR42_RS06790	0.25	+0.9
1,471,086	-		RR42_RS06790	0.25	+0.6
1,471,226	+		RR42_RS06790	0.33	-1.9
1,471,304	+		RR42_RS06790	0.38	-1.5
1,471,304	+		RR42_RS06790	0.38	-1.5
1,471,304	+		RR42_RS06790	0.38	-0.3
1,471,305	-		RR42_RS06790	0.38	+0.0
1,471,323	-		RR42_RS06790	0.39	-0.8
1,471,433	+		RR42_RS06790	0.45	+0.1
1,471,434	-		RR42_RS06790	0.45	-1.2
1,471,566	-		RR42_RS06790	0.53	-0.9
1,471,817	+		RR42_RS06790	0.68	-0.5
1,471,817	+		RR42_RS06790	0.68	-0.3
1,471,880	+		RR42_RS06790	0.72	+0.9
1,471,880	+		RR42_RS06790	0.72	-1.4
1,471,925	+		RR42_RS06790	0.74	+0.1
1,471,926	-		RR42_RS06790	0.74	-0.7
1,471,963	+		RR42_RS06790	0.76	-1.8
1,472,058	+		RR42_RS06790	0.82	-1.1
1,472,059	-		RR42_RS06790	0.82	+0.7
1,472,059	-		RR42_RS06790	0.82	-1.1
1,472,153	+		RR42_RS06790	0.88	-1.0
1,472,153	+		RR42_RS06790	0.88	-0.1
1,472,154	-		RR42_RS06790	0.88	-0.5
1,472,154	-		RR42_RS06790	0.88	+0.3
1,472,622	+		RR42_RS06795	0.53	+0.4
1,472,622	+		RR42_RS06795	0.53	-0.1
1,472,622	+		RR42_RS06795	0.53	+0.1
1,472,623	-		RR42_RS06795	0.53	+0.2
1,472,692	+		RR42_RS06795	0.68	+0.1
1,472,693	-		RR42_RS06795	0.68	+1.2
1,472,693	-		RR42_RS06795	0.68	-1.0
1,472,781	-		RR42_RS06795	0.87	+0.3
1,472,801	+				+0.3
1,472,802	-				-0.6
1,472,843	-				-0.3
1,472,869	+				+0.7
1,472,870	-				-0.0
1,472,870	-				-0.5
1,472,870	-				+0.4
1,472,904	+				-0.2
1,472,905	-				+0.0
1,472,946	+				-0.4
1,472,947	-				+0.8
1,472,947	-				+0.6
1,472,961	-				+0.0
1,473,080	+				+0.3
1,473,080	+				+0.0
1,473,081	-				+0.3
1,473,172	+				+0.9
1,473,172	+				+0.2
1,473,172	+				-0.8
1,473,173	-				-0.0
1,473,267	+		RR42_RS06800	0.15	-1.4
1,473,268	-		RR42_RS06800	0.16	-0.5
1,473,268	-		RR42_RS06800	0.16	-0.7
1,473,268	-		RR42_RS06800	0.16	+0.5
1,473,268	-		RR42_RS06800	0.16	+0.2
1,473,269	+		RR42_RS06800	0.16	-0.9
1,473,269	+		RR42_RS06800	0.16	+1.7
1,473,270	-		RR42_RS06800	0.16	-1.1
1,473,270	-		RR42_RS06800	0.16	-0.6
1,473,270	-		RR42_RS06800	0.16	-0.6
1,473,270	-		RR42_RS06800	0.16	-0.7
1,473,270	-		RR42_RS06800	0.16	+1.4
1,473,321	-		RR42_RS06800	0.22	-0.5
1,473,343	+		RR42_RS06800	0.24	+0.6