Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06065

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06050 and RR42_RS06055 are separated by 42 nucleotidesRR42_RS06055 and RR42_RS06060 are separated by 66 nucleotidesRR42_RS06060 and RR42_RS06065 are separated by 61 nucleotidesRR42_RS06065 and RR42_RS06070 are separated by 271 nucleotides RR42_RS06050: RR42_RS06050 - molecular chaperone HscA, at 1,327,631 to 1,329,493 _RS06050 RR42_RS06055: RR42_RS06055 - (2Fe-2S) ferredoxin, at 1,329,536 to 1,329,874 _RS06055 RR42_RS06060: RR42_RS06060 - hypothetical protein, at 1,329,941 to 1,330,135 _RS06060 RR42_RS06065: RR42_RS06065 - hypothetical protein, at 1,330,197 to 1,330,979 _RS06065 RR42_RS06070: RR42_RS06070 - lysyl-tRNA synthetase, at 1,331,251 to 1,332,789 _RS06070 Position (kb) 1330 1331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1329.515 kb on + strandat 1329.959 kb on + strandat 1329.959 kb on - strandat 1330.134 kb on - strandat 1330.268 kb on - strandat 1330.315 kb on + strand, within RR42_RS06065at 1330.500 kb on + strand, within RR42_RS06065at 1330.501 kb on - strand, within RR42_RS06065at 1330.507 kb on - strand, within RR42_RS06065at 1330.591 kb on + strand, within RR42_RS06065at 1330.979 kb on + strandat 1330.979 kb on + strandat 1330.979 kb on + strandat 1331.041 kb on + strandat 1331.041 kb on + strandat 1331.041 kb on + strandat 1331.041 kb on + strandat 1331.042 kb on - strandat 1331.091 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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1,329,515 + -2.5
1,329,959 + -0.4
1,329,959 - -1.3
1,330,134 - -2.8
1,330,268 - -0.1
1,330,315 + RR42_RS06065 0.15 +0.7
1,330,500 + RR42_RS06065 0.39 -0.3
1,330,501 - RR42_RS06065 0.39 +0.2
1,330,507 - RR42_RS06065 0.40 +2.1
1,330,591 + RR42_RS06065 0.50 +0.3
1,330,979 + -0.9
1,330,979 + +1.4
1,330,979 + -0.1
1,331,041 + -0.4
1,331,041 + +0.5
1,331,041 + +1.5
1,331,041 + -0.6
1,331,042 - -0.1
1,331,091 + +1.2

Or see this region's nucleotide sequence