Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05390

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05380 and RR42_RS05385 are separated by 148 nucleotidesRR42_RS05385 and RR42_RS05390 overlap by 4 nucleotidesRR42_RS05390 and RR42_RS05395 are separated by 139 nucleotidesRR42_RS05395 and RR42_RS05400 are separated by 4 nucleotides RR42_RS05380: RR42_RS05380 - membrane protein, at 1,190,318 to 1,190,935 _RS05380 RR42_RS05385: RR42_RS05385 - LOG family protein, at 1,191,084 to 1,191,668 _RS05385 RR42_RS05390: RR42_RS05390 - TetR family transcriptional regulator, at 1,191,665 to 1,192,363 _RS05390 RR42_RS05395: RR42_RS05395 - DeoR family transcriptional regulator, at 1,192,503 to 1,192,898 _RS05395 RR42_RS05400: RR42_RS05400 - GDP-mannose-dependent alpha-mannosyltransferase, at 1,192,903 to 1,194,069 _RS05400 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -2 -1 0 1 2at 1190.705 kb on + strand, within RR42_RS05380at 1191.253 kb on + strand, within RR42_RS05385at 1191.254 kb on - strand, within RR42_RS05385at 1191.296 kb on - strand, within RR42_RS05385at 1191.557 kb on - strand, within RR42_RS05385at 1191.649 kb on + strandat 1191.649 kb on + strandat 1191.650 kb on - strandat 1191.650 kb on - strandat 1191.778 kb on + strand, within RR42_RS05390at 1191.778 kb on + strand, within RR42_RS05390at 1191.778 kb on + strand, within RR42_RS05390at 1191.778 kb on + strand, within RR42_RS05390at 1191.778 kb on + strand, within RR42_RS05390at 1191.779 kb on - strand, within RR42_RS05390at 1191.779 kb on - strand, within RR42_RS05390at 1191.783 kb on + strand, within RR42_RS05390at 1191.784 kb on - strand, within RR42_RS05390at 1191.784 kb on - strand, within RR42_RS05390at 1191.829 kb on - strand, within RR42_RS05390at 1191.829 kb on - strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.868 kb on - strand, within RR42_RS05390at 1191.868 kb on - strand, within RR42_RS05390at 1191.886 kb on + strand, within RR42_RS05390at 1191.886 kb on + strand, within RR42_RS05390at 1191.887 kb on - strand, within RR42_RS05390at 1192.086 kb on + strand, within RR42_RS05390at 1192.086 kb on + strand, within RR42_RS05390at 1192.086 kb on + strand, within RR42_RS05390at 1192.086 kb on + strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.087 kb on - strand, within RR42_RS05390at 1192.096 kb on - strand, within RR42_RS05390at 1192.215 kb on + strand, within RR42_RS05390at 1192.218 kb on + strand, within RR42_RS05390at 1192.406 kb on - strandat 1192.407 kb on + strandat 1192.408 kb on - strandat 1192.572 kb on + strand, within RR42_RS05395at 1192.912 kb on + strandat 1192.913 kb on - strandat 1192.913 kb on - strandat 1192.913 kb on - strandat 1193.311 kb on - strand, within RR42_RS05400at 1193.351 kb on + strand, within RR42_RS05400at 1193.351 kb on + strand, within RR42_RS05400at 1193.351 kb on + strand, within RR42_RS05400at 1193.351 kb on + strand, within RR42_RS05400at 1193.352 kb on - strand, within RR42_RS05400

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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1,190,705 + RR42_RS05380 0.63 +0.7
1,191,253 + RR42_RS05385 0.29 -0.1
1,191,254 - RR42_RS05385 0.29 -0.4
1,191,296 - RR42_RS05385 0.36 -0.1
1,191,557 - RR42_RS05385 0.81 -0.6
1,191,649 + +0.0
1,191,649 + -0.5
1,191,650 - -0.2
1,191,650 - +1.0
1,191,778 + RR42_RS05390 0.16 -1.1
1,191,778 + RR42_RS05390 0.16 +0.2
1,191,778 + RR42_RS05390 0.16 -0.1
1,191,778 + RR42_RS05390 0.16 +0.1
1,191,778 + RR42_RS05390 0.16 +0.1
1,191,779 - RR42_RS05390 0.16 -0.2
1,191,779 - RR42_RS05390 0.16 +0.6
1,191,783 + RR42_RS05390 0.17 -1.1
1,191,784 - RR42_RS05390 0.17 -2.0
1,191,784 - RR42_RS05390 0.17 -1.4
1,191,829 - RR42_RS05390 0.23 -1.1
1,191,829 - RR42_RS05390 0.23 +0.3
1,191,867 + RR42_RS05390 0.29 +0.5
1,191,867 + RR42_RS05390 0.29 +0.6
1,191,867 + RR42_RS05390 0.29 +1.0
1,191,867 + RR42_RS05390 0.29 -0.2
1,191,867 + RR42_RS05390 0.29 +0.0
1,191,867 + RR42_RS05390 0.29 -0.3
1,191,868 - RR42_RS05390 0.29 -0.9
1,191,868 - RR42_RS05390 0.29 -2.1
1,191,886 + RR42_RS05390 0.32 -1.4
1,191,886 + RR42_RS05390 0.32 +0.9
1,191,887 - RR42_RS05390 0.32 -1.2
1,192,086 + RR42_RS05390 0.60 -0.3
1,192,086 + RR42_RS05390 0.60 -0.8
1,192,086 + RR42_RS05390 0.60 +2.0
1,192,086 + RR42_RS05390 0.60 -0.2
1,192,087 - RR42_RS05390 0.60 -1.0
1,192,087 - RR42_RS05390 0.60 -1.5
1,192,087 - RR42_RS05390 0.60 -0.7
1,192,087 - RR42_RS05390 0.60 -0.2
1,192,087 - RR42_RS05390 0.60 -1.1
1,192,087 - RR42_RS05390 0.60 +0.2
1,192,087 - RR42_RS05390 0.60 +0.6
1,192,087 - RR42_RS05390 0.60 -0.9
1,192,087 - RR42_RS05390 0.60 +0.2
1,192,087 - RR42_RS05390 0.60 +0.7
1,192,096 - RR42_RS05390 0.62 -0.5
1,192,215 + RR42_RS05390 0.79 +0.7
1,192,218 + RR42_RS05390 0.79 +0.5
1,192,406 - -0.2
1,192,407 + -0.3
1,192,408 - -0.4
1,192,572 + RR42_RS05395 0.17 -0.4
1,192,912 + +0.6
1,192,913 - -0.6
1,192,913 - -0.6
1,192,913 - +0.4
1,193,311 - RR42_RS05400 0.35 +0.3
1,193,351 + RR42_RS05400 0.38 +0.9
1,193,351 + RR42_RS05400 0.38 -1.8
1,193,351 + RR42_RS05400 0.38 -0.9
1,193,351 + RR42_RS05400 0.38 -0.4
1,193,352 - RR42_RS05400 0.38 +1.4

Or see this region's nucleotide sequence