Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05335

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
1,178,142	+		RR42_RS05330	0.26	-0.6
1,178,220	+		RR42_RS05330	0.34	-0.3
1,178,221	-		RR42_RS05330	0.34	-0.2
1,179,013	+				-0.4
1,179,016	+				-0.0
1,179,017	-				-0.5
1,179,017	-				-0.7
1,179,017	-				-0.7
1,179,017	-				-0.1
1,179,104	-				+1.5
1,179,235	+				-1.0
1,179,235	+				-0.1
1,179,236	-				+0.2
1,179,236	-				+0.9
1,179,236	-				+0.5
1,179,275	-		RR42_RS05335	0.11	-0.2
1,179,556	+		RR42_RS05335	0.23	-3.1
1,179,556	+		RR42_RS05335	0.23	-0.0
1,179,557	-		RR42_RS05335	0.23	-0.4
1,179,557	-		RR42_RS05335	0.23	+0.0
1,179,592	+		RR42_RS05335	0.24	-1.8
1,179,592	+		RR42_RS05335	0.24	-0.3
1,179,809	+		RR42_RS05335	0.34	-0.2
1,179,941	-		RR42_RS05335	0.39	-2.1
1,179,992	+		RR42_RS05335	0.41	-0.8
1,179,993	-		RR42_RS05335	0.41	-0.4
1,180,081	+		RR42_RS05335	0.45	+0.6
1,180,243	+		RR42_RS05335	0.52	+1.0
1,180,243	+		RR42_RS05335	0.52	-0.9
1,180,244	-		RR42_RS05335	0.52	+0.5
1,180,244	-		RR42_RS05335	0.52	+0.4
1,180,244	-		RR42_RS05335	0.52	-0.3
1,180,352	-		RR42_RS05335	0.57	+3.0
1,180,682	+		RR42_RS05335	0.71	-0.1
1,180,682	+		RR42_RS05335	0.71	+1.0
1,180,682	+		RR42_RS05335	0.71	-0.1
1,180,682	+		RR42_RS05335	0.71	-2.7
1,180,682	+		RR42_RS05335	0.71	-0.6
1,180,787	-		RR42_RS05335	0.75	+0.4
1,180,894	+		RR42_RS05335	0.80	+0.5
1,180,894	+		RR42_RS05335	0.80	-0.5
1,180,895	-		RR42_RS05335	0.80	-1.7
1,180,895	-		RR42_RS05335	0.80	-0.5
1,180,895	-		RR42_RS05335	0.80	+0.2
1,181,242	+				-0.4
1,181,242	+				+0.8
1,181,764	+		RR42_RS05340	0.25	+0.5
1,181,764	+		RR42_RS05340	0.25	-0.9
1,181,764	+		RR42_RS05340	0.25	-0.5
1,181,764	+		RR42_RS05340	0.25	+0.2
1,181,765	-		RR42_RS05340	0.25	-0.8
1,181,765	-		RR42_RS05340	0.25	-0.6
1,181,765	-		RR42_RS05340	0.25	-0.4
1,181,768	+		RR42_RS05340	0.25	+0.4
1,181,845	+		RR42_RS05340	0.30	+0.7
1,181,845	+		RR42_RS05340	0.30	+0.1
1,181,854	+		RR42_RS05340	0.31	-1.0
1,181,854	+		RR42_RS05340	0.31	-1.0
1,182,148	+		RR42_RS05340	0.50	-1.0
1,182,148	+		RR42_RS05340	0.50	-0.6
1,182,148	+		RR42_RS05340	0.50	+0.4
1,182,148	+		RR42_RS05340	0.50	-0.5
1,182,149	-		RR42_RS05340	0.50	+0.0
1,182,149	-		RR42_RS05340	0.50	-2.9
1,182,277	+		RR42_RS05340	0.59	-0.8
1,182,278	-		RR42_RS05340	0.59	-2.0