Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04700

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
1,046,234	+		RR42_RS04690	0.86	+0.9
1,046,235	-		RR42_RS04690	0.86	+0.2
1,046,337	+				+0.9
1,046,337	+				-0.2
1,046,337	+				-0.2
1,046,338	-				-0.5
1,046,338	-				+0.6
1,046,338	-				+0.3
1,046,394	+				-0.4
1,046,394	+				-0.2
1,046,394	+				-0.5
1,046,395	-				+0.2
1,046,395	-				-0.2
1,046,395	-				-0.2
1,046,406	+				-1.6
1,046,406	+				-1.0
1,046,407	-				-0.4
1,046,407	-				+1.0
1,046,407	-				+0.4
1,046,408	+				+0.2
1,046,409	-				-1.5
1,046,409	-				+0.9
1,046,409	-				+0.3
1,046,409	-				-2.7
1,046,409	-				-0.9
1,046,409	-				+0.7
1,046,415	+				+0.7
1,046,415	+				-0.7
1,046,416	-				-0.1
1,046,416	-				-1.9
1,046,432	-				+0.4
1,046,537	+				-0.4
1,046,537	+				-0.9
1,046,537	+				+0.1
1,046,537	+				+0.2
1,046,538	-				+0.4
1,046,636	-		RR42_RS04695	0.22	-0.0
1,046,641	+		RR42_RS04695	0.22	-2.6
1,046,765	+		RR42_RS04695	0.43	+3.1
1,046,766	-		RR42_RS04695	0.43	+0.2
1,046,783	+		RR42_RS04695	0.46	+0.2
1,046,783	+		RR42_RS04695	0.46	-0.3
1,046,831	+		RR42_RS04695	0.53	+0.0
1,046,832	-		RR42_RS04695	0.53	-0.8
1,046,832	-		RR42_RS04695	0.53	-0.3
1,047,971	+		RR42_RS04700	0.57	-2.1
1,048,313	+		RR42_RS04700	0.81	-1.0
1,048,472	+				+1.1
1,048,472	+				-1.3
1,048,473	-				-2.5
1,048,597	-				-0.3
1,048,800	-		RR42_RS04705	0.12	-0.3
1,048,850	+		RR42_RS04705	0.20	+0.2
1,048,889	+		RR42_RS04705	0.26	+0.2
1,048,890	-		RR42_RS04705	0.27	+0.2
1,048,890	-		RR42_RS04705	0.27	-0.0
1,048,890	-		RR42_RS04705	0.27	-0.5
1,048,890	-		RR42_RS04705	0.27	+0.9
1,049,180	+		RR42_RS04705	0.74	+0.1
1,049,259	-		RR42_RS04705	0.87	+0.1
1,049,259	-		RR42_RS04705	0.87	-0.3
1,049,315	+				+1.1
1,049,316	-				-1.5
1,049,316	-				-0.1
1,049,325	+				-0.9
1,049,325	+				+0.5
1,049,325	+				-0.7
1,049,326	-				-0.2
1,049,351	-				+0.2
1,049,400	+				+0.2
1,049,400	+				-0.3
1,049,457	-				+0.7