Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04610

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
1,027,158	+		RR42_RS04600	0.87	-1.2
1,027,158	+		RR42_RS04600	0.87	-1.2
1,027,159	-		RR42_RS04600	0.87	-0.6
1,027,320	+				-0.8
1,027,320	+				+0.3
1,027,321	-				-0.3
1,027,515	+		RR42_RS04605	0.40	+0.1
1,027,516	-		RR42_RS04605	0.41	-0.4
1,027,516	-		RR42_RS04605	0.41	+0.3
1,027,516	-		RR42_RS04605	0.41	-1.4
1,027,544	+		RR42_RS04605	0.46	-0.3
1,027,544	+		RR42_RS04605	0.46	-2.5
1,027,544	+		RR42_RS04605	0.46	-0.1
1,027,544	+		RR42_RS04605	0.46	+0.5
1,027,686	+		RR42_RS04605	0.76	+1.1
1,027,689	+		RR42_RS04605	0.76	-1.1
1,027,689	+		RR42_RS04605	0.76	-0.7
1,027,690	-		RR42_RS04605	0.76	+0.1
1,027,816	+				-0.2
1,027,816	+				-1.7
1,027,816	+				+1.2
1,027,816	+				-0.0
1,027,816	+				-1.3
1,027,816	+				-0.1
1,027,816	+				-0.2
1,027,816	+				+0.1
1,027,817	-				-0.6
1,027,817	-				-0.8
1,027,817	-				+0.1
1,027,817	-				+1.1
1,027,822	-				-2.0
1,027,893	+				-0.9
1,027,893	+				-0.6
1,027,893	+				-0.1
1,027,894	-				+0.0
1,027,894	-				+0.1
1,027,894	-				+0.5
1,027,894	-				-1.6
1,027,894	-				-0.8
1,028,008	+				+1.1
1,028,008	+				+1.1
1,028,009	-				+1.4
1,028,009	-				-0.3
1,028,009	-				-0.8
1,028,009	-				-0.5
1,028,172	+		RR42_RS04610	0.21	+0.7
1,028,172	+		RR42_RS04610	0.21	-0.7
1,028,312	-		RR42_RS04610	0.55	+1.1
1,028,385	+		RR42_RS04610	0.73	-0.5
1,028,385	+		RR42_RS04610	0.73	-1.3
1,028,386	-		RR42_RS04610	0.74	-1.5
1,028,386	-		RR42_RS04610	0.74	-0.4
1,028,386	-		RR42_RS04610	0.74	-1.2
1,028,386	-		RR42_RS04610	0.74	-0.5
1,028,506	+				-0.8
1,028,507	-				-1.2
1,028,537	-				+0.0
1,028,550	-				-0.4
1,028,577	+				+1.1
1,028,577	+				+1.1
1,028,578	-				-0.2
1,028,578	-				-0.2
1,028,578	-				-1.2
1,028,632	+				+0.1
1,028,927	+		RR42_RS04615	0.24	+1.1
1,028,927	+		RR42_RS04615	0.24	+0.6
1,029,044	+		RR42_RS04615	0.34	-0.2
1,029,044	+		RR42_RS04615	0.34	+0.3
1,029,045	-		RR42_RS04615	0.35	+1.1
1,029,045	-		RR42_RS04615	0.35	+1.1
1,029,273	+		RR42_RS04615	0.55	-1.2
1,029,273	+		RR42_RS04615	0.55	-0.0
1,029,274	-		RR42_RS04615	0.55	+1.1
1,029,274	-		RR42_RS04615	0.55	+0.8
1,029,299	+		RR42_RS04615	0.57	-1.5
1,029,299	+		RR42_RS04615	0.57	+0.4
1,029,299	+		RR42_RS04615	0.57	-0.6
1,029,306	-		RR42_RS04615	0.58	-0.6
1,029,371	-		RR42_RS04615	0.63	+3.7
1,029,473	-		RR42_RS04615	0.72	+1.0