Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03785 and RR42_RS03790 are separated by 410 nucleotides RR42_RS03790 and RR42_RS03795 are separated by 139 nucleotides RR42_RS03795 and RR42_RS03800 are separated by 22 nucleotides
RR42_RS03785: RR42_RS03785 - membrane protein, at 835,289 to 836,815
_RS03785
RR42_RS03790: RR42_RS03790 - molybdenum cofactor biosynthesis protein MoaA, at 837,226 to 837,480
_RS03790
RR42_RS03795: RR42_RS03795 - tyrosine protein phosphatase, at 837,620 to 838,336
_RS03795
RR42_RS03800: RR42_RS03800 - acetate kinase, at 838,359 to 839,585
_RS03800
Position (kb) 837
838
839 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 836.700 kb on - strand at 836.716 kb on - strand at 836.993 kb on - strand at 836.993 kb on - strand at 837.037 kb on + strand at 837.128 kb on - strand at 837.128 kb on - strand at 837.128 kb on - strand at 837.237 kb on - strand at 837.295 kb on + strand, within RR42_RS03790 at 837.296 kb on - strand, within RR42_RS03790 at 837.427 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.931 kb on + strand, within RR42_RS03795 at 837.932 kb on + strand, within RR42_RS03795 at 837.953 kb on + strand, within RR42_RS03795 at 837.953 kb on + strand, within RR42_RS03795 at 838.010 kb on + strand, within RR42_RS03795 at 838.103 kb on + strand, within RR42_RS03795 at 838.104 kb on - strand, within RR42_RS03795 at 838.319 kb on + strand at 838.360 kb on + strand at 838.361 kb on - strand at 838.753 kb on + strand, within RR42_RS03800 at 838.754 kb on - strand, within RR42_RS03800 at 838.754 kb on - strand, within RR42_RS03800 at 838.996 kb on + strand, within RR42_RS03800 at 838.996 kb on + strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 839.003 kb on - strand, within RR42_RS03800 at 839.047 kb on + strand, within RR42_RS03800 at 839.055 kb on - strand, within RR42_RS03800 at 839.221 kb on - strand, within RR42_RS03800 at 839.274 kb on + strand, within RR42_RS03800 at 839.275 kb on - strand, within RR42_RS03800
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 836,700 - +1.1 836,716 - -0.5 836,993 - +0.6 836,993 - +0.2 837,037 + -0.6 837,128 - +0.7 837,128 - +0.4 837,128 - +0.8 837,237 - +0.7 837,295 + RR42_RS03790 0.27 -0.7 837,296 - RR42_RS03790 0.27 -0.2 837,427 + RR42_RS03790 0.79 +0.5 837,429 + RR42_RS03790 0.80 -0.0 837,429 + RR42_RS03790 0.80 -0.0 837,429 + RR42_RS03790 0.80 -0.1 837,429 + RR42_RS03790 0.80 +0.3 837,931 + RR42_RS03795 0.43 -0.5 837,932 + RR42_RS03795 0.44 +0.4 837,953 + RR42_RS03795 0.46 +0.3 837,953 + RR42_RS03795 0.46 +1.0 838,010 + RR42_RS03795 0.54 -2.9 838,103 + RR42_RS03795 0.67 +1.9 838,104 - RR42_RS03795 0.68 +0.5 838,319 + -0.6 838,360 + -0.1 838,361 - -0.7 838,753 + RR42_RS03800 0.32 +0.1 838,754 - RR42_RS03800 0.32 -0.0 838,754 - RR42_RS03800 0.32 +0.0 838,996 + RR42_RS03800 0.52 +0.3 838,996 + RR42_RS03800 0.52 -1.0 838,997 - RR42_RS03800 0.52 +2.0 838,997 - RR42_RS03800 0.52 -0.3 838,997 - RR42_RS03800 0.52 +1.3 839,003 - RR42_RS03800 0.52 -0.4 839,047 + RR42_RS03800 0.56 -0.2 839,055 - RR42_RS03800 0.57 -0.7 839,221 - RR42_RS03800 0.70 -0.5 839,274 + RR42_RS03800 0.75 -0.8 839,275 - RR42_RS03800 0.75 +1.1
Or see this region's nucleotide sequence