Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03555 and RR42_RS03560 are separated by 501 nucleotides RR42_RS03560 and RR42_RS03565 are separated by 708 nucleotides
RR42_RS03555: RR42_RS03555 - hypothetical protein, at 791,278 to 792,225
_RS03555
RR42_RS03560: RR42_RS03560 - hypothetical protein, at 792,727 to 793,317
_RS03560
RR42_RS03565: RR42_RS03565 - hypothetical protein, at 794,026 to 794,631
_RS03565
Position (kb) 792
793
794 Strain fitness (log2 ratio) -2
-1
0
1 at 791.779 kb on + strand, within RR42_RS03555 at 791.780 kb on - strand, within RR42_RS03555 at 791.788 kb on - strand, within RR42_RS03555 at 791.970 kb on + strand, within RR42_RS03555 at 792.065 kb on - strand, within RR42_RS03555 at 792.276 kb on - strand at 792.276 kb on - strand at 792.276 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.383 kb on - strand at 792.492 kb on - strand at 792.553 kb on + strand at 792.771 kb on + strand at 792.814 kb on + strand, within RR42_RS03560 at 792.814 kb on + strand, within RR42_RS03560 at 792.814 kb on + strand, within RR42_RS03560 at 792.815 kb on - strand, within RR42_RS03560 at 792.818 kb on + strand, within RR42_RS03560 at 793.385 kb on + strand at 793.386 kb on - strand at 793.386 kb on - strand at 793.438 kb on - strand at 793.452 kb on + strand at 793.576 kb on + strand at 793.669 kb on + strand at 793.683 kb on + strand at 793.684 kb on - strand at 793.698 kb on + strand at 793.824 kb on + strand at 793.860 kb on + strand at 793.861 kb on - strand at 793.867 kb on + strand at 793.867 kb on + strand at 793.868 kb on - strand at 794.107 kb on - strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.186 kb on - strand, within RR42_RS03565 at 794.212 kb on - strand, within RR42_RS03565 at 794.232 kb on - strand, within RR42_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 791,779 + RR42_RS03555 0.53 -0.8 791,780 - RR42_RS03555 0.53 +0.1 791,788 - RR42_RS03555 0.54 -0.9 791,970 + RR42_RS03555 0.73 -0.1 792,065 - RR42_RS03555 0.83 +0.4 792,276 - -0.8 792,276 - +0.5 792,276 - +1.1 792,294 - +0.3 792,294 - +0.5 792,294 - +0.5 792,294 - +0.7 792,383 - -1.0 792,492 - +0.3 792,553 + +1.1 792,771 + +0.6 792,814 + RR42_RS03560 0.15 -1.7 792,814 + RR42_RS03560 0.15 -2.3 792,814 + RR42_RS03560 0.15 -1.2 792,815 - RR42_RS03560 0.15 +0.7 792,818 + RR42_RS03560 0.15 -0.3 793,385 + +0.1 793,386 - -1.1 793,386 - -2.2 793,438 - -0.4 793,452 + -0.1 793,576 + -0.3 793,669 + -2.2 793,683 + -0.5 793,684 - +0.7 793,698 + +0.1 793,824 + -1.9 793,860 + -1.0 793,861 - +1.1 793,867 + -0.5 793,867 + -1.9 793,868 - -0.6 794,107 - RR42_RS03565 0.13 -2.0 794,185 + RR42_RS03565 0.26 -0.8 794,185 + RR42_RS03565 0.26 +0.1 794,186 - RR42_RS03565 0.26 -1.0 794,212 - RR42_RS03565 0.31 +0.1 794,232 - RR42_RS03565 0.34 +0.1
Or see this region's nucleotide sequence