Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02240 and RR42_RS02245 are separated by 42 nucleotides RR42_RS02245 and RR42_RS02250 are separated by 159 nucleotides RR42_RS02250 and RR42_RS02255 are separated by 169 nucleotides
RR42_RS02240: RR42_RS02240 - D-galactarate dehydratase, at 495,768 to 496,943
_RS02240
RR42_RS02245: RR42_RS02245 - flagellar protein FlgA, at 496,986 to 497,267
_RS02245
RR42_RS02250: RR42_RS02250 - GntR family transcriptional regulator, at 497,427 to 498,179
_RS02250
RR42_RS02255: RR42_RS02255 - acid phosphatase, at 498,349 to 500,487
_RS02255
Position (kb) 497
498
499 Strain fitness (log2 ratio) -2
-1
0
1 at 496.467 kb on - strand, within RR42_RS02240 at 496.541 kb on - strand, within RR42_RS02240 at 497.256 kb on + strand at 497.438 kb on - strand at 497.469 kb on + strand at 497.470 kb on - strand at 497.537 kb on - strand, within RR42_RS02250 at 497.941 kb on - strand, within RR42_RS02250 at 497.941 kb on - strand, within RR42_RS02250 at 497.941 kb on - strand, within RR42_RS02250 at 498.207 kb on + strand at 498.207 kb on + strand at 498.307 kb on + strand at 498.504 kb on - strand at 498.537 kb on - strand at 498.612 kb on - strand, within RR42_RS02255 at 498.612 kb on - strand, within RR42_RS02255 at 498.632 kb on + strand, within RR42_RS02255 at 498.633 kb on - strand, within RR42_RS02255 at 498.699 kb on + strand, within RR42_RS02255 at 498.764 kb on + strand, within RR42_RS02255 at 498.764 kb on + strand, within RR42_RS02255 at 498.765 kb on - strand, within RR42_RS02255 at 498.765 kb on - strand, within RR42_RS02255 at 498.765 kb on - strand, within RR42_RS02255 at 498.765 kb on - strand, within RR42_RS02255 at 498.882 kb on - strand, within RR42_RS02255 at 498.882 kb on - strand, within RR42_RS02255 at 498.929 kb on + strand, within RR42_RS02255 at 498.930 kb on - strand, within RR42_RS02255 at 498.930 kb on - strand, within RR42_RS02255 at 499.142 kb on + strand, within RR42_RS02255 at 499.143 kb on - strand, within RR42_RS02255 at 499.143 kb on - strand, within RR42_RS02255
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 496,467 - RR42_RS02240 0.59 -0.4 496,541 - RR42_RS02240 0.66 +0.5 497,256 + +0.6 497,438 - -0.4 497,469 + -1.4 497,470 - -1.8 497,537 - RR42_RS02250 0.15 -0.1 497,941 - RR42_RS02250 0.68 +0.8 497,941 - RR42_RS02250 0.68 +0.4 497,941 - RR42_RS02250 0.68 +1.0 498,207 + -0.5 498,207 + -0.7 498,307 + +0.2 498,504 - +1.6 498,537 - -1.1 498,612 - RR42_RS02255 0.12 +1.5 498,612 - RR42_RS02255 0.12 +0.2 498,632 + RR42_RS02255 0.13 +0.8 498,633 - RR42_RS02255 0.13 -0.8 498,699 + RR42_RS02255 0.16 +0.6 498,764 + RR42_RS02255 0.19 -0.0 498,764 + RR42_RS02255 0.19 -0.7 498,765 - RR42_RS02255 0.19 -0.1 498,765 - RR42_RS02255 0.19 -0.7 498,765 - RR42_RS02255 0.19 -0.4 498,765 - RR42_RS02255 0.19 -1.0 498,882 - RR42_RS02255 0.25 -0.2 498,882 - RR42_RS02255 0.25 +0.2 498,929 + RR42_RS02255 0.27 -0.4 498,930 - RR42_RS02255 0.27 -0.3 498,930 - RR42_RS02255 0.27 +0.6 499,142 + RR42_RS02255 0.37 -0.1 499,143 - RR42_RS02255 0.37 -0.3 499,143 - RR42_RS02255 0.37 -0.6
Or see this region's nucleotide sequence