Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01880 and RR42_RS01885 are separated by 226 nucleotides RR42_RS01885 and RR42_RS01890 are separated by 34 nucleotides RR42_RS01890 and RR42_RS01895 are separated by 135 nucleotides
RR42_RS01880: RR42_RS01880 - cytochrome oxidase subunit I, at 423,935 to 425,539
_RS01880
RR42_RS01885: RR42_RS01885 - cytochrome C oxidase assembly protein, at 425,766 to 426,380
_RS01885
RR42_RS01890: RR42_RS01890 - membrane protein, at 426,415 to 426,627
_RS01890
RR42_RS01895: RR42_RS01895 - MFS transporter, at 426,763 to 427,623
_RS01895
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1 at 424.805 kb on - strand, within RR42_RS01880 at 424.805 kb on - strand, within RR42_RS01880 at 424.818 kb on - strand, within RR42_RS01880 at 424.913 kb on + strand, within RR42_RS01880 at 424.914 kb on - strand, within RR42_RS01880 at 424.914 kb on - strand, within RR42_RS01880 at 425.105 kb on + strand, within RR42_RS01880 at 425.130 kb on - strand, within RR42_RS01880 at 425.130 kb on - strand, within RR42_RS01880 at 425.174 kb on + strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.208 kb on - strand, within RR42_RS01880 at 425.208 kb on - strand, within RR42_RS01880 at 425.394 kb on - strand at 425.394 kb on - strand at 425.537 kb on + strand at 425.537 kb on + strand at 425.537 kb on + strand at 425.563 kb on - strand at 425.759 kb on + strand at 425.886 kb on + strand, within RR42_RS01885 at 425.941 kb on - strand, within RR42_RS01885 at 426.139 kb on - strand, within RR42_RS01885 at 426.282 kb on - strand, within RR42_RS01885 at 426.282 kb on - strand, within RR42_RS01885 at 426.291 kb on + strand, within RR42_RS01885 at 426.292 kb on - strand, within RR42_RS01885 at 426.294 kb on - strand, within RR42_RS01885 at 426.662 kb on + strand at 426.663 kb on - strand at 426.666 kb on + strand at 426.666 kb on + strand at 426.791 kb on - strand at 426.791 kb on - strand at 426.793 kb on + strand at 426.794 kb on - strand at 426.831 kb on + strand at 426.898 kb on + strand, within RR42_RS01895 at 426.898 kb on + strand, within RR42_RS01895 at 426.898 kb on + strand, within RR42_RS01895 at 426.986 kb on - strand, within RR42_RS01895 at 427.081 kb on + strand, within RR42_RS01895 at 427.082 kb on - strand, within RR42_RS01895 at 427.154 kb on + strand, within RR42_RS01895 at 427.299 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 424,805 - RR42_RS01880 0.54 -0.1 424,805 - RR42_RS01880 0.54 -2.3 424,818 - RR42_RS01880 0.55 -0.8 424,913 + RR42_RS01880 0.61 +0.2 424,914 - RR42_RS01880 0.61 -0.9 424,914 - RR42_RS01880 0.61 +1.2 425,105 + RR42_RS01880 0.73 -0.3 425,130 - RR42_RS01880 0.74 -2.0 425,130 - RR42_RS01880 0.74 +0.4 425,174 + RR42_RS01880 0.77 -1.4 425,175 - RR42_RS01880 0.77 -1.4 425,175 - RR42_RS01880 0.77 -0.7 425,175 - RR42_RS01880 0.77 +1.6 425,208 - RR42_RS01880 0.79 -1.0 425,208 - RR42_RS01880 0.79 -0.5 425,394 - -0.3 425,394 - -0.3 425,537 + +0.4 425,537 + -0.2 425,537 + -0.8 425,563 - +0.0 425,759 + -0.6 425,886 + RR42_RS01885 0.20 -0.6 425,941 - RR42_RS01885 0.28 -1.8 426,139 - RR42_RS01885 0.61 -1.2 426,282 - RR42_RS01885 0.84 +0.6 426,282 - RR42_RS01885 0.84 -1.7 426,291 + RR42_RS01885 0.85 -0.9 426,292 - RR42_RS01885 0.86 -1.6 426,294 - RR42_RS01885 0.86 -1.0 426,662 + +1.5 426,663 - -0.8 426,666 + -0.8 426,666 + -1.1 426,791 - -0.7 426,791 - -1.1 426,793 + -0.6 426,794 - +0.0 426,831 + -1.7 426,898 + RR42_RS01895 0.16 -0.2 426,898 + RR42_RS01895 0.16 +0.4 426,898 + RR42_RS01895 0.16 -0.5 426,986 - RR42_RS01895 0.26 +0.3 427,081 + RR42_RS01895 0.37 +0.0 427,082 - RR42_RS01895 0.37 +0.7 427,154 + RR42_RS01895 0.45 +1.2 427,299 + RR42_RS01895 0.62 -1.1 427,366 + RR42_RS01895 0.70 +0.4 427,366 + RR42_RS01895 0.70 -0.5
Or see this region's nucleotide sequence