Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01590 and RR42_RS01595 are separated by 183 nucleotides RR42_RS01595 and RR42_RS01600 are separated by 367 nucleotides
RR42_RS01590: RR42_RS01590 - GntR family transcriptional regulator, at 359,928 to 361,334
_RS01590
RR42_RS01595: RR42_RS01595 - hypothetical protein, at 361,518 to 361,856
_RS01595
RR42_RS01600: RR42_RS01600 - methylmalonyl-CoA mutase, at 362,224 to 365,532
_RS01600
Position (kb) 361
362 Strain fitness (log2 ratio) -1
0
1 at 360.710 kb on - strand, within RR42_RS01590 at 360.712 kb on + strand, within RR42_RS01590 at 360.737 kb on + strand, within RR42_RS01590 at 360.892 kb on + strand, within RR42_RS01590 at 361.031 kb on + strand, within RR42_RS01590 at 361.031 kb on + strand, within RR42_RS01590 at 361.032 kb on - strand, within RR42_RS01590 at 361.152 kb on + strand, within RR42_RS01590 at 361.165 kb on + strand, within RR42_RS01590 at 361.166 kb on - strand, within RR42_RS01590 at 361.414 kb on + strand at 361.415 kb on - strand at 361.430 kb on + strand at 361.430 kb on + strand at 361.431 kb on - strand at 361.431 kb on - strand at 361.431 kb on - strand at 361.528 kb on + strand at 361.529 kb on - strand at 361.529 kb on - strand at 361.912 kb on + strand at 361.912 kb on + strand at 361.918 kb on + strand at 361.918 kb on + strand at 361.919 kb on - strand at 361.919 kb on - strand at 361.919 kb on - strand at 362.022 kb on + strand at 362.023 kb on - strand at 362.023 kb on - strand at 362.039 kb on - strand at 362.039 kb on - strand at 362.039 kb on - strand at 362.095 kb on + strand at 362.428 kb on - strand at 362.527 kb on + strand at 362.527 kb on + strand at 362.629 kb on + strand, within RR42_RS01600 at 362.630 kb on - strand, within RR42_RS01600 at 362.732 kb on - strand, within RR42_RS01600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 360,710 - RR42_RS01590 0.56 -0.5 360,712 + RR42_RS01590 0.56 -0.8 360,737 + RR42_RS01590 0.57 -0.9 360,892 + RR42_RS01590 0.69 -0.0 361,031 + RR42_RS01590 0.78 -1.0 361,031 + RR42_RS01590 0.78 -0.3 361,032 - RR42_RS01590 0.78 +0.1 361,152 + RR42_RS01590 0.87 -0.6 361,165 + RR42_RS01590 0.88 -0.6 361,166 - RR42_RS01590 0.88 -1.3 361,414 + -0.2 361,415 - +0.8 361,430 + +0.0 361,430 + -0.1 361,431 - -0.1 361,431 - +0.3 361,431 - +0.7 361,528 + -0.3 361,529 - +0.0 361,529 - -0.5 361,912 + -0.3 361,912 + -0.7 361,918 + -0.4 361,918 + -0.3 361,919 - -0.4 361,919 - -0.2 361,919 - +0.2 362,022 + -0.3 362,023 - -0.5 362,023 - +0.5 362,039 - +0.3 362,039 - -0.9 362,039 - -0.5 362,095 + -0.3 362,428 - +0.2 362,527 + -0.0 362,527 + -0.2 362,629 + RR42_RS01600 0.12 -0.3 362,630 - RR42_RS01600 0.12 -0.0 362,732 - RR42_RS01600 0.15 +0.4
Or see this region's nucleotide sequence