Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00735

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00730 and RR42_RS00735 are separated by 265 nucleotidesRR42_RS00735 and RR42_RS00740 are separated by 66 nucleotides RR42_RS00730: RR42_RS00730 - enoyl-CoA hydratase, at 184,116 to 184,934 _RS00730 RR42_RS00735: RR42_RS00735 - fumarylacetoacetate hydrolase, at 185,200 to 186,183 _RS00735 RR42_RS00740: RR42_RS00740 - ABC transporter substrate-binding protein, at 186,250 to 187,206 _RS00740 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2at 184.244 kb on + strand, within RR42_RS00730at 184.245 kb on - strand, within RR42_RS00730at 184.255 kb on + strand, within RR42_RS00730at 184.255 kb on + strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.487 kb on + strand, within RR42_RS00730at 184.487 kb on + strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.618 kb on + strand, within RR42_RS00730at 184.618 kb on + strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.799 kb on + strand, within RR42_RS00730at 184.799 kb on + strand, within RR42_RS00730at 184.800 kb on - strand, within RR42_RS00730at 185.360 kb on + strand, within RR42_RS00735at 185.440 kb on - strand, within RR42_RS00735at 185.440 kb on - strand, within RR42_RS00735at 185.585 kb on - strand, within RR42_RS00735at 185.585 kb on - strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.803 kb on - strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 186.026 kb on + strand, within RR42_RS00735at 186.027 kb on - strand, within RR42_RS00735at 186.027 kb on - strand, within RR42_RS00735at 186.027 kb on - strand, within RR42_RS00735at 186.104 kb on + strandat 186.104 kb on + strandat 186.105 kb on - strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.197 kb on + strandat 186.252 kb on - strandat 186.476 kb on + strand, within RR42_RS00740at 186.477 kb on - strand, within RR42_RS00740at 186.477 kb on - strand, within RR42_RS00740at 186.477 kb on - strand, within RR42_RS00740at 186.672 kb on - strand, within RR42_RS00740at 186.788 kb on + strand, within RR42_RS00740at 186.788 kb on + strand, within RR42_RS00740at 186.788 kb on + strand, within RR42_RS00740at 186.788 kb on + strand, within RR42_RS00740at 186.789 kb on - strand, within RR42_RS00740at 186.789 kb on - strand, within RR42_RS00740at 186.789 kb on - strand, within RR42_RS00740at 186.897 kb on - strand, within RR42_RS00740at 186.897 kb on - strand, within RR42_RS00740at 186.911 kb on + strand, within RR42_RS00740at 186.962 kb on + strand, within RR42_RS00740at 186.963 kb on - strand, within RR42_RS00740at 186.963 kb on - strand, within RR42_RS00740at 186.963 kb on - strand, within RR42_RS00740

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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184,244 + RR42_RS00730 0.16 +0.2
184,245 - RR42_RS00730 0.16 -1.3
184,255 + RR42_RS00730 0.17 -0.3
184,255 + RR42_RS00730 0.17 -0.3
184,256 - RR42_RS00730 0.17 +0.1
184,256 - RR42_RS00730 0.17 -1.7
184,256 - RR42_RS00730 0.17 -0.6
184,408 + RR42_RS00730 0.36 -0.3
184,408 + RR42_RS00730 0.36 -0.3
184,408 + RR42_RS00730 0.36 -0.1
184,409 - RR42_RS00730 0.36 +0.7
184,409 - RR42_RS00730 0.36 +0.1
184,409 - RR42_RS00730 0.36 +0.2
184,409 - RR42_RS00730 0.36 -0.2
184,411 + RR42_RS00730 0.36 -0.5
184,411 + RR42_RS00730 0.36 -0.6
184,411 + RR42_RS00730 0.36 -0.0
184,411 + RR42_RS00730 0.36 -0.0
184,411 + RR42_RS00730 0.36 +0.9
184,411 + RR42_RS00730 0.36 +0.2
184,411 + RR42_RS00730 0.36 +0.9
184,411 + RR42_RS00730 0.36 -0.4
184,412 - RR42_RS00730 0.36 -0.7
184,412 - RR42_RS00730 0.36 -0.4
184,412 - RR42_RS00730 0.36 -1.2
184,487 + RR42_RS00730 0.45 +0.3
184,487 + RR42_RS00730 0.45 -0.9
184,530 - RR42_RS00730 0.51 +0.5
184,530 - RR42_RS00730 0.51 -0.2
184,530 - RR42_RS00730 0.51 -2.0
184,618 + RR42_RS00730 0.61 -1.2
184,618 + RR42_RS00730 0.61 -1.3
184,619 - RR42_RS00730 0.61 +0.6
184,619 - RR42_RS00730 0.61 +0.1
184,619 - RR42_RS00730 0.61 -1.3
184,799 + RR42_RS00730 0.83 -0.5
184,799 + RR42_RS00730 0.83 +0.9
184,800 - RR42_RS00730 0.84 -0.0
185,360 + RR42_RS00735 0.16 -0.4
185,440 - RR42_RS00735 0.24 +0.5
185,440 - RR42_RS00735 0.24 +0.4
185,585 - RR42_RS00735 0.39 -0.6
185,585 - RR42_RS00735 0.39 -0.0
185,668 + RR42_RS00735 0.48 -0.0
185,668 + RR42_RS00735 0.48 -0.0
185,668 + RR42_RS00735 0.48 -1.2
185,668 + RR42_RS00735 0.48 -0.2
185,668 + RR42_RS00735 0.48 -0.3
185,669 - RR42_RS00735 0.48 -0.2
185,669 - RR42_RS00735 0.48 +0.1
185,669 - RR42_RS00735 0.48 +0.3
185,669 - RR42_RS00735 0.48 +0.7
185,803 - RR42_RS00735 0.61 +0.4
185,843 + RR42_RS00735 0.65 +0.8
185,843 + RR42_RS00735 0.65 +0.5
185,843 + RR42_RS00735 0.65 +0.6
185,844 - RR42_RS00735 0.65 -0.9
185,844 - RR42_RS00735 0.65 +0.8
185,844 - RR42_RS00735 0.65 -0.7
185,844 - RR42_RS00735 0.65 -0.3
186,026 + RR42_RS00735 0.84 +0.1
186,027 - RR42_RS00735 0.84 -0.3
186,027 - RR42_RS00735 0.84 +0.6
186,027 - RR42_RS00735 0.84 -0.7
186,104 + +0.2
186,104 + +0.3
186,105 - -0.2
186,185 + +0.6
186,185 + -1.9
186,185 + +1.8
186,185 + -1.3
186,185 + +0.4
186,185 + -0.2
186,186 - -0.1
186,186 - +0.1
186,186 - +0.1
186,186 - +0.6
186,186 - +0.7
186,197 + -0.1
186,252 - +0.2
186,476 + RR42_RS00740 0.24 +1.1
186,477 - RR42_RS00740 0.24 -1.3
186,477 - RR42_RS00740 0.24 +0.9
186,477 - RR42_RS00740 0.24 +0.9
186,672 - RR42_RS00740 0.44 +1.1
186,788 + RR42_RS00740 0.56 +0.8
186,788 + RR42_RS00740 0.56 -1.0
186,788 + RR42_RS00740 0.56 +0.2
186,788 + RR42_RS00740 0.56 +0.8
186,789 - RR42_RS00740 0.56 -0.1
186,789 - RR42_RS00740 0.56 +0.2
186,789 - RR42_RS00740 0.56 +0.1
186,897 - RR42_RS00740 0.68 -0.0
186,897 - RR42_RS00740 0.68 -0.3
186,911 + RR42_RS00740 0.69 +1.1
186,962 + RR42_RS00740 0.74 +0.9
186,963 - RR42_RS00740 0.75 -0.3
186,963 - RR42_RS00740 0.75 -1.4
186,963 - RR42_RS00740 0.75 +0.7

Or see this region's nucleotide sequence