Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_694

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_693 and Pf1N1B4_694 are separated by 293 nucleotidesPf1N1B4_694 and Pf1N1B4_695 are separated by 218 nucleotides Pf1N1B4_693 - ABC spermidine/putrescine transporter, inner membrane subunit, at 791,111 to 791,917 _693 Pf1N1B4_694 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 792,211 to 793,314 _694 Pf1N1B4_695 - Aldehyde dehydrogenase (EC 1.2.1.3), at 793,533 to 794,981 _695 Position (kb) 792 793 794Strain fitness (log2 ratio) -2 -1 0 1 2 3at 791.433 kb on + strand, within Pf1N1B4_693at 791.530 kb on - strand, within Pf1N1B4_693at 791.530 kb on - strand, within Pf1N1B4_693at 791.530 kb on - strand, within Pf1N1B4_693at 791.530 kb on - strand, within Pf1N1B4_693at 791.712 kb on + strand, within Pf1N1B4_693at 791.712 kb on + strand, within Pf1N1B4_693at 791.713 kb on - strand, within Pf1N1B4_693at 791.793 kb on + strandat 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strandat 791.817 kb on + strand, within Pf1N1B4_693at 791.877 kb on - strandat 792.113 kb on + strandat 792.113 kb on + strandat 792.187 kb on + strandat 792.187 kb on + strandat 792.188 kb on - strandat 792.188 kb on - strandat 792.323 kb on + strand, within Pf1N1B4_694at 792.323 kb on + strand, within Pf1N1B4_694at 792.323 kb on + strand, within Pf1N1B4_694at 792.323 kb on + strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.380 kb on + strand, within Pf1N1B4_694at 792.380 kb on + strand, within Pf1N1B4_694at 792.380 kb on + strand, within Pf1N1B4_694at 792.380 kb on + strand, within Pf1N1B4_694at 792.380 kb on + strandat 792.380 kb on + strand, within Pf1N1B4_694at 792.381 kb on - strand, within Pf1N1B4_694at 792.381 kb on - strand, within Pf1N1B4_694at 792.381 kb on - strand, within Pf1N1B4_694at 792.441 kb on - strand, within Pf1N1B4_694at 792.441 kb on - strand, within Pf1N1B4_694at 792.500 kb on + strand, within Pf1N1B4_694at 792.500 kb on + strand, within Pf1N1B4_694at 792.500 kb on + strand, within Pf1N1B4_694at 792.501 kb on - strand, within Pf1N1B4_694at 792.539 kb on + strand, within Pf1N1B4_694at 792.540 kb on - strand, within Pf1N1B4_694at 792.581 kb on + strand, within Pf1N1B4_694at 792.581 kb on + strand, within Pf1N1B4_694at 792.582 kb on - strand, within Pf1N1B4_694at 792.666 kb on + strand, within Pf1N1B4_694at 792.818 kb on + strand, within Pf1N1B4_694at 792.818 kb on + strand, within Pf1N1B4_694at 792.818 kb on + strand, within Pf1N1B4_694at 792.818 kb on + strand, within Pf1N1B4_694at 792.819 kb on - strand, within Pf1N1B4_694at 792.819 kb on - strand, within Pf1N1B4_694at 792.855 kb on - strand, within Pf1N1B4_694at 793.025 kb on + strand, within Pf1N1B4_694at 793.109 kb on + strand, within Pf1N1B4_694at 793.110 kb on - strand, within Pf1N1B4_694at 793.110 kb on - strand, within Pf1N1B4_694at 793.337 kb on - strandat 793.337 kb on - strandat 793.337 kb on - strandat 793.340 kb on + strandat 793.340 kb on + strandat 793.340 kb on + strandat 793.341 kb on - strandat 793.341 kb on - strandat 793.801 kb on - strand, within Pf1N1B4_695at 793.914 kb on - strand, within Pf1N1B4_695at 794.196 kb on + strand, within Pf1N1B4_695

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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791,433 + Pf1N1B4_693 0.40 -0.6
791,530 - Pf1N1B4_693 0.52 -0.5
791,530 - Pf1N1B4_693 0.52 -0.8
791,530 - Pf1N1B4_693 0.52 +0.3
791,530 - Pf1N1B4_693 0.52 -1.5
791,712 + Pf1N1B4_693 0.74 +1.9
791,712 + Pf1N1B4_693 0.74 +0.8
791,713 - Pf1N1B4_693 0.75 +0.6
791,793 + -1.5
791,797 - Pf1N1B4_693 0.85 -0.4
791,797 - Pf1N1B4_693 0.85 +0.4
791,797 - Pf1N1B4_693 0.85 -0.7
791,797 - Pf1N1B4_693 0.85 +1.5
791,797 - Pf1N1B4_693 0.85 -0.7
791,797 - +0.7
791,817 + Pf1N1B4_693 0.87 +1.3
791,877 - -0.2
792,113 + -0.0
792,113 + +0.1
792,187 + +1.3
792,187 + +0.7
792,188 - -0.3
792,188 - +0.1
792,323 + Pf1N1B4_694 0.10 +0.1
792,323 + Pf1N1B4_694 0.10 -1.2
792,323 + Pf1N1B4_694 0.10 +0.5
792,323 + Pf1N1B4_694 0.10 +1.3
792,324 - Pf1N1B4_694 0.10 -0.0
792,324 - Pf1N1B4_694 0.10 +0.3
792,324 - Pf1N1B4_694 0.10 -0.5
792,324 - Pf1N1B4_694 0.10 +0.6
792,324 - Pf1N1B4_694 0.10 +0.3
792,380 + Pf1N1B4_694 0.15 +0.7
792,380 + Pf1N1B4_694 0.15 -0.9
792,380 + Pf1N1B4_694 0.15 -0.9
792,380 + Pf1N1B4_694 0.15 +1.3
792,380 + +0.9
792,380 + Pf1N1B4_694 0.15 -0.1
792,381 - Pf1N1B4_694 0.15 -0.3
792,381 - Pf1N1B4_694 0.15 +1.7
792,381 - Pf1N1B4_694 0.15 +1.0
792,441 - Pf1N1B4_694 0.21 +0.3
792,441 - Pf1N1B4_694 0.21 -1.1
792,500 + Pf1N1B4_694 0.26 +0.9
792,500 + Pf1N1B4_694 0.26 +0.5
792,500 + Pf1N1B4_694 0.26 -0.8
792,501 - Pf1N1B4_694 0.26 +0.1
792,539 + Pf1N1B4_694 0.30 -0.6
792,540 - Pf1N1B4_694 0.30 +0.3
792,581 + Pf1N1B4_694 0.34 +0.8
792,581 + Pf1N1B4_694 0.34 -0.0
792,582 - Pf1N1B4_694 0.34 -0.3
792,666 + Pf1N1B4_694 0.41 +2.0
792,818 + Pf1N1B4_694 0.55 +3.6
792,818 + Pf1N1B4_694 0.55 -1.2
792,818 + Pf1N1B4_694 0.55 +1.0
792,818 + Pf1N1B4_694 0.55 -1.0
792,819 - Pf1N1B4_694 0.55 -2.2
792,819 - Pf1N1B4_694 0.55 +0.2
792,855 - Pf1N1B4_694 0.58 +0.4
793,025 + Pf1N1B4_694 0.74 -0.2
793,109 + Pf1N1B4_694 0.81 -0.9
793,110 - Pf1N1B4_694 0.81 -0.3
793,110 - Pf1N1B4_694 0.81 -1.8
793,337 - +0.3
793,337 - -1.2
793,337 - +0.6
793,340 + +0.7
793,340 + +0.1
793,340 + -0.4
793,341 - +1.5
793,341 - -0.3
793,801 - Pf1N1B4_695 0.18 +0.2
793,914 - Pf1N1B4_695 0.26 +1.0
794,196 + Pf1N1B4_695 0.46 +0.3

Or see this region's nucleotide sequence