Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_693 and Pf1N1B4_694 are separated by 293 nucleotides Pf1N1B4_694 and Pf1N1B4_695 are separated by 218 nucleotides
Pf1N1B4_693 - ABC spermidine/putrescine transporter, inner membrane subunit, at 791,111 to 791,917
_693
Pf1N1B4_694 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 792,211 to 793,314
_694
Pf1N1B4_695 - Aldehyde dehydrogenase (EC 1.2.1.3), at 793,533 to 794,981
_695
Position (kb)
792
793
794 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 791.433 kb on + strand, within Pf1N1B4_693 at 791.530 kb on - strand, within Pf1N1B4_693 at 791.530 kb on - strand, within Pf1N1B4_693 at 791.530 kb on - strand, within Pf1N1B4_693 at 791.530 kb on - strand, within Pf1N1B4_693 at 791.712 kb on + strand, within Pf1N1B4_693 at 791.712 kb on + strand, within Pf1N1B4_693 at 791.713 kb on - strand, within Pf1N1B4_693 at 791.793 kb on + strand at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand at 791.817 kb on + strand, within Pf1N1B4_693 at 791.877 kb on - strand at 792.113 kb on + strand at 792.113 kb on + strand at 792.187 kb on + strand at 792.187 kb on + strand at 792.188 kb on - strand at 792.188 kb on - strand at 792.323 kb on + strand, within Pf1N1B4_694 at 792.323 kb on + strand, within Pf1N1B4_694 at 792.323 kb on + strand, within Pf1N1B4_694 at 792.323 kb on + strand, within Pf1N1B4_694 at 792.324 kb on - strand, within Pf1N1B4_694 at 792.324 kb on - strand, within Pf1N1B4_694 at 792.324 kb on - strand, within Pf1N1B4_694 at 792.324 kb on - strand, within Pf1N1B4_694 at 792.324 kb on - strand, within Pf1N1B4_694 at 792.380 kb on + strand, within Pf1N1B4_694 at 792.380 kb on + strand, within Pf1N1B4_694 at 792.380 kb on + strand, within Pf1N1B4_694 at 792.380 kb on + strand, within Pf1N1B4_694 at 792.380 kb on + strand at 792.380 kb on + strand, within Pf1N1B4_694 at 792.381 kb on - strand, within Pf1N1B4_694 at 792.381 kb on - strand, within Pf1N1B4_694 at 792.381 kb on - strand, within Pf1N1B4_694 at 792.441 kb on - strand, within Pf1N1B4_694 at 792.441 kb on - strand, within Pf1N1B4_694 at 792.500 kb on + strand, within Pf1N1B4_694 at 792.500 kb on + strand, within Pf1N1B4_694 at 792.500 kb on + strand, within Pf1N1B4_694 at 792.501 kb on - strand, within Pf1N1B4_694 at 792.539 kb on + strand, within Pf1N1B4_694 at 792.540 kb on - strand, within Pf1N1B4_694 at 792.581 kb on + strand, within Pf1N1B4_694 at 792.581 kb on + strand, within Pf1N1B4_694 at 792.582 kb on - strand, within Pf1N1B4_694 at 792.666 kb on + strand, within Pf1N1B4_694 at 792.818 kb on + strand, within Pf1N1B4_694 at 792.818 kb on + strand, within Pf1N1B4_694 at 792.818 kb on + strand, within Pf1N1B4_694 at 792.818 kb on + strand, within Pf1N1B4_694 at 792.819 kb on - strand, within Pf1N1B4_694 at 792.819 kb on - strand, within Pf1N1B4_694 at 792.855 kb on - strand, within Pf1N1B4_694 at 793.025 kb on + strand, within Pf1N1B4_694 at 793.109 kb on + strand, within Pf1N1B4_694 at 793.110 kb on - strand, within Pf1N1B4_694 at 793.110 kb on - strand, within Pf1N1B4_694 at 793.337 kb on - strand at 793.337 kb on - strand at 793.337 kb on - strand at 793.340 kb on + strand at 793.340 kb on + strand at 793.340 kb on + strand at 793.341 kb on - strand at 793.341 kb on - strand at 793.801 kb on - strand, within Pf1N1B4_695 at 793.914 kb on - strand, within Pf1N1B4_695 at 794.196 kb on + strand, within Pf1N1B4_695
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 791,433 + Pf1N1B4_693 0.40 -0.6 791,530 - Pf1N1B4_693 0.52 -0.5 791,530 - Pf1N1B4_693 0.52 -0.8 791,530 - Pf1N1B4_693 0.52 +0.3 791,530 - Pf1N1B4_693 0.52 -1.5 791,712 + Pf1N1B4_693 0.74 +1.9 791,712 + Pf1N1B4_693 0.74 +0.8 791,713 - Pf1N1B4_693 0.75 +0.6 791,793 + -1.5 791,797 - Pf1N1B4_693 0.85 -0.4 791,797 - Pf1N1B4_693 0.85 +0.4 791,797 - Pf1N1B4_693 0.85 -0.7 791,797 - Pf1N1B4_693 0.85 +1.5 791,797 - Pf1N1B4_693 0.85 -0.7 791,797 - +0.7 791,817 + Pf1N1B4_693 0.87 +1.3 791,877 - -0.2 792,113 + -0.0 792,113 + +0.1 792,187 + +1.3 792,187 + +0.7 792,188 - -0.3 792,188 - +0.1 792,323 + Pf1N1B4_694 0.10 +0.1 792,323 + Pf1N1B4_694 0.10 -1.2 792,323 + Pf1N1B4_694 0.10 +0.5 792,323 + Pf1N1B4_694 0.10 +1.3 792,324 - Pf1N1B4_694 0.10 -0.0 792,324 - Pf1N1B4_694 0.10 +0.3 792,324 - Pf1N1B4_694 0.10 -0.5 792,324 - Pf1N1B4_694 0.10 +0.6 792,324 - Pf1N1B4_694 0.10 +0.3 792,380 + Pf1N1B4_694 0.15 +0.7 792,380 + Pf1N1B4_694 0.15 -0.9 792,380 + Pf1N1B4_694 0.15 -0.9 792,380 + Pf1N1B4_694 0.15 +1.3 792,380 + +0.9 792,380 + Pf1N1B4_694 0.15 -0.1 792,381 - Pf1N1B4_694 0.15 -0.3 792,381 - Pf1N1B4_694 0.15 +1.7 792,381 - Pf1N1B4_694 0.15 +1.0 792,441 - Pf1N1B4_694 0.21 +0.3 792,441 - Pf1N1B4_694 0.21 -1.1 792,500 + Pf1N1B4_694 0.26 +0.9 792,500 + Pf1N1B4_694 0.26 +0.5 792,500 + Pf1N1B4_694 0.26 -0.8 792,501 - Pf1N1B4_694 0.26 +0.1 792,539 + Pf1N1B4_694 0.30 -0.6 792,540 - Pf1N1B4_694 0.30 +0.3 792,581 + Pf1N1B4_694 0.34 +0.8 792,581 + Pf1N1B4_694 0.34 -0.0 792,582 - Pf1N1B4_694 0.34 -0.3 792,666 + Pf1N1B4_694 0.41 +2.0 792,818 + Pf1N1B4_694 0.55 +3.6 792,818 + Pf1N1B4_694 0.55 -1.2 792,818 + Pf1N1B4_694 0.55 +1.0 792,818 + Pf1N1B4_694 0.55 -1.0 792,819 - Pf1N1B4_694 0.55 -2.2 792,819 - Pf1N1B4_694 0.55 +0.2 792,855 - Pf1N1B4_694 0.58 +0.4 793,025 + Pf1N1B4_694 0.74 -0.2 793,109 + Pf1N1B4_694 0.81 -0.9 793,110 - Pf1N1B4_694 0.81 -0.3 793,110 - Pf1N1B4_694 0.81 -1.8 793,337 - +0.3 793,337 - -1.2 793,337 - +0.6 793,340 + +0.7 793,340 + +0.1 793,340 + -0.4 793,341 - +1.5 793,341 - -0.3 793,801 - Pf1N1B4_695 0.18 +0.2 793,914 - Pf1N1B4_695 0.26 +1.0 794,196 + Pf1N1B4_695 0.46 +0.3
Or see this region's nucleotide sequence