Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_614

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_613 and Pf1N1B4_614 are separated by 446 nucleotidesPf1N1B4_614 and Pf1N1B4_615 are separated by 35 nucleotides Pf1N1B4_613 - Arginine/ornithine antiporter ArcD, at 707,879 to 709,306 _613 Pf1N1B4_614 - Arginine/ornithine antiporter ArcD, at 709,753 to 711,180 _614 Pf1N1B4_615 - Arginine deiminase (EC 3.5.3.6), at 711,216 to 712,472 _615 Position (kb) 709 710 711 712Strain fitness (log2 ratio) -1 0 1 2at 709.054 kb on - strand, within Pf1N1B4_613at 709.054 kb on - strand, within Pf1N1B4_613at 709.054 kb on - strand, within Pf1N1B4_613at 709.054 kb on - strand, within Pf1N1B4_613at 709.083 kb on + strand, within Pf1N1B4_613at 709.083 kb on + strand, within Pf1N1B4_613at 709.083 kb on + strandat 709.083 kb on + strandat 709.083 kb on + strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strandat 709.084 kb on - strand, within Pf1N1B4_613at 709.335 kb on - strandat 709.374 kb on - strandat 709.385 kb on - strandat 709.422 kb on - strandat 709.425 kb on + strandat 709.426 kb on - strandat 709.473 kb on + strandat 709.473 kb on + strandat 709.474 kb on - strandat 709.529 kb on + strandat 709.540 kb on + strandat 709.541 kb on - strandat 709.541 kb on - strandat 709.643 kb on + strandat 709.643 kb on + strandat 709.652 kb on - strandat 709.882 kb on - strandat 709.976 kb on - strand, within Pf1N1B4_614at 710.005 kb on + strand, within Pf1N1B4_614at 710.065 kb on + strand, within Pf1N1B4_614at 710.065 kb on + strandat 710.816 kb on - strand, within Pf1N1B4_614at 710.830 kb on + strand, within Pf1N1B4_614at 710.861 kb on - strand, within Pf1N1B4_614at 710.911 kb on + strand, within Pf1N1B4_614at 710.912 kb on - strandat 710.912 kb on - strand, within Pf1N1B4_614at 710.971 kb on + strand, within Pf1N1B4_614at 710.971 kb on + strand, within Pf1N1B4_614at 710.990 kb on - strand, within Pf1N1B4_614at 711.031 kb on + strand, within Pf1N1B4_614at 711.031 kb on + strand, within Pf1N1B4_614at 711.123 kb on - strandat 711.123 kb on - strandat 711.214 kb on + strandat 711.237 kb on + strandat 711.756 kb on + strand, within Pf1N1B4_615at 711.757 kb on - strand, within Pf1N1B4_615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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709,054 - Pf1N1B4_613 0.82 +0.3
709,054 - Pf1N1B4_613 0.82 -1.7
709,054 - Pf1N1B4_613 0.82 -0.3
709,054 - Pf1N1B4_613 0.82 +0.0
709,083 + Pf1N1B4_613 0.84 +1.3
709,083 + Pf1N1B4_613 0.84 -1.1
709,083 + +0.7
709,083 + -0.7
709,083 + Pf1N1B4_613 0.84 +2.3
709,084 - Pf1N1B4_613 0.84 -0.9
709,084 - Pf1N1B4_613 0.84 -0.1
709,084 - Pf1N1B4_613 0.84 -1.0
709,084 - Pf1N1B4_613 0.84 -0.2
709,084 - Pf1N1B4_613 0.84 +0.4
709,084 - +1.3
709,084 - Pf1N1B4_613 0.84 +0.3
709,335 - +0.3
709,374 - +0.0
709,385 - -0.1
709,422 - -1.3
709,425 + -0.5
709,426 - -0.5
709,473 + -0.5
709,473 + -0.7
709,474 - +0.8
709,529 + +0.3
709,540 + -0.1
709,541 - -0.5
709,541 - +1.7
709,643 + -0.3
709,643 + -1.3
709,652 - -0.2
709,882 - +0.3
709,976 - Pf1N1B4_614 0.16 +0.8
710,005 + Pf1N1B4_614 0.18 +0.7
710,065 + Pf1N1B4_614 0.22 -0.1
710,065 + +0.8
710,816 - Pf1N1B4_614 0.74 +1.5
710,830 + Pf1N1B4_614 0.75 -0.1
710,861 - Pf1N1B4_614 0.78 +0.7
710,911 + Pf1N1B4_614 0.81 +0.3
710,912 - +0.3
710,912 - Pf1N1B4_614 0.81 -0.1
710,971 + Pf1N1B4_614 0.85 -1.7
710,971 + Pf1N1B4_614 0.85 -0.9
710,990 - Pf1N1B4_614 0.87 +0.8
711,031 + Pf1N1B4_614 0.89 +0.3
711,031 + Pf1N1B4_614 0.89 +1.8
711,123 - -0.3
711,123 - +1.0
711,214 + -0.3
711,237 + +0.3
711,756 + Pf1N1B4_615 0.43 +1.5
711,757 - Pf1N1B4_615 0.43 +1.8

Or see this region's nucleotide sequence