Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_579

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_577 and Pf1N1B4_578 are separated by 45 nucleotidesPf1N1B4_578 and Pf1N1B4_579 are separated by 83 nucleotidesPf1N1B4_579 and Pf1N1B4_580 are separated by 11 nucleotidesPf1N1B4_580 and Pf1N1B4_581 overlap by 14 nucleotides Pf1N1B4_577 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23); putative, at 669,959 to 670,903 _577 Pf1N1B4_578 - enoyl-CoA hydratase, R-specific, at 670,949 to 671,419 _578 Pf1N1B4_579 - Membrane fusion component of tripartite multidrug resistance system, at 671,503 to 672,363 _579 Pf1N1B4_580 - FIG00953813: hypothetical protein, at 672,375 to 672,581 _580 Pf1N1B4_581 - membrane protein, putative, at 672,568 to 674,556 _581 Position (kb) 671 672 673Strain fitness (log2 ratio) -2 -1 0 1 2at 670.559 kb on + strand, within Pf1N1B4_577at 670.559 kb on + strand, within Pf1N1B4_577at 670.559 kb on + strand, within Pf1N1B4_577at 670.560 kb on - strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577at 671.006 kb on + strand, within Pf1N1B4_578at 671.119 kb on + strand, within Pf1N1B4_578at 671.195 kb on + strand, within Pf1N1B4_578at 671.196 kb on - strand, within Pf1N1B4_578at 671.197 kb on + strand, within Pf1N1B4_578at 671.292 kb on + strandat 671.292 kb on + strand, within Pf1N1B4_578at 671.422 kb on + strandat 671.422 kb on + strandat 671.423 kb on - strandat 671.458 kb on + strandat 671.458 kb on + strandat 671.665 kb on - strand, within Pf1N1B4_579at 671.665 kb on - strand, within Pf1N1B4_579at 671.789 kb on + strand, within Pf1N1B4_579at 671.801 kb on + strand, within Pf1N1B4_579at 671.802 kb on - strand, within Pf1N1B4_579at 671.802 kb on - strand, within Pf1N1B4_579at 671.802 kb on - strand, within Pf1N1B4_579at 671.802 kb on - strand, within Pf1N1B4_579at 671.802 kb on - strandat 671.852 kb on + strand, within Pf1N1B4_579at 671.852 kb on + strand, within Pf1N1B4_579at 671.852 kb on + strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.856 kb on + strand, within Pf1N1B4_579at 671.856 kb on + strand, within Pf1N1B4_579at 671.857 kb on - strand, within Pf1N1B4_579at 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.282 kb on - strandat 672.282 kb on - strandat 672.282 kb on - strandat 672.282 kb on - strandat 672.284 kb on + strandat 672.350 kb on - strandat 672.357 kb on + strandat 672.357 kb on + strandat 672.357 kb on + strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.364 kb on - strandat 672.364 kb on - strandat 672.377 kb on - strandat 672.378 kb on + strandat 672.412 kb on - strand, within Pf1N1B4_580at 672.412 kb on - strand, within Pf1N1B4_580at 672.412 kb on - strand, within Pf1N1B4_580at 672.412 kb on - strand, within Pf1N1B4_580at 672.421 kb on + strand, within Pf1N1B4_580at 672.421 kb on + strand, within Pf1N1B4_580at 672.421 kb on + strandat 672.421 kb on + strand, within Pf1N1B4_580at 672.421 kb on + strand, within Pf1N1B4_580at 672.421 kb on + strand, within Pf1N1B4_580at 672.422 kb on - strand, within Pf1N1B4_580at 672.422 kb on - strand, within Pf1N1B4_580at 672.422 kb on - strand, within Pf1N1B4_580at 672.422 kb on - strand, within Pf1N1B4_580at 672.422 kb on - strand, within Pf1N1B4_580at 672.422 kb on - strand, within Pf1N1B4_580at 673.051 kb on - strand, within Pf1N1B4_581at 673.078 kb on + strand, within Pf1N1B4_581at 673.174 kb on - strandat 673.174 kb on - strand, within Pf1N1B4_581at 673.174 kb on - strand, within Pf1N1B4_581

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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670,559 + Pf1N1B4_577 0.63 +0.2
670,559 + Pf1N1B4_577 0.63 -0.0
670,559 + Pf1N1B4_577 0.63 +1.2
670,560 - Pf1N1B4_577 0.64 -0.1
670,783 + Pf1N1B4_577 0.87 -0.8
670,783 + Pf1N1B4_577 0.87 +0.0
670,783 + Pf1N1B4_577 0.87 +0.1
671,006 + Pf1N1B4_578 0.12 +0.2
671,119 + Pf1N1B4_578 0.36 +1.2
671,195 + Pf1N1B4_578 0.52 -1.9
671,196 - Pf1N1B4_578 0.52 +0.2
671,197 + Pf1N1B4_578 0.53 -0.3
671,292 + +0.2
671,292 + Pf1N1B4_578 0.73 -0.3
671,422 + -0.5
671,422 + +0.0
671,423 - +1.6
671,458 + +0.7
671,458 + +0.3
671,665 - Pf1N1B4_579 0.19 +0.3
671,665 - Pf1N1B4_579 0.19 +1.0
671,789 + Pf1N1B4_579 0.33 +0.4
671,801 + Pf1N1B4_579 0.35 -0.1
671,802 - Pf1N1B4_579 0.35 +0.2
671,802 - Pf1N1B4_579 0.35 -0.3
671,802 - Pf1N1B4_579 0.35 +0.6
671,802 - Pf1N1B4_579 0.35 +0.2
671,802 - +1.2
671,852 + Pf1N1B4_579 0.41 +0.8
671,852 + Pf1N1B4_579 0.41 -0.2
671,852 + Pf1N1B4_579 0.41 +0.2
671,853 - Pf1N1B4_579 0.41 -0.2
671,853 - Pf1N1B4_579 0.41 +0.7
671,853 - Pf1N1B4_579 0.41 +0.8
671,853 - Pf1N1B4_579 0.41 +0.7
671,853 - Pf1N1B4_579 0.41 +0.8
671,856 + Pf1N1B4_579 0.41 -0.5
671,856 + Pf1N1B4_579 0.41 +0.8
671,857 - Pf1N1B4_579 0.41 +0.0
672,281 + +0.9
672,281 + +0.1
672,281 + +1.5
672,281 + -1.6
672,281 + -0.1
672,281 + -1.1
672,281 + +0.5
672,281 + -0.1
672,281 + -0.9
672,281 + -0.2
672,282 - +0.8
672,282 - -0.1
672,282 - +1.2
672,282 - -0.3
672,284 + -0.6
672,350 - +0.9
672,357 + -0.8
672,357 + +0.3
672,357 + -0.3
672,358 - -0.1
672,358 - -0.1
672,358 - -0.6
672,358 - +0.1
672,358 - -1.1
672,358 - -0.3
672,358 - +0.5
672,358 - +0.5
672,358 - -0.8
672,358 - +0.1
672,364 - +0.2
672,364 - +0.5
672,377 - +0.7
672,378 + +0.2
672,412 - Pf1N1B4_580 0.18 +0.8
672,412 - Pf1N1B4_580 0.18 +0.2
672,412 - Pf1N1B4_580 0.18 +1.8
672,412 - Pf1N1B4_580 0.18 +0.5
672,421 + Pf1N1B4_580 0.22 -0.2
672,421 + Pf1N1B4_580 0.22 -0.3
672,421 + -0.3
672,421 + Pf1N1B4_580 0.22 -0.1
672,421 + Pf1N1B4_580 0.22 -1.3
672,421 + Pf1N1B4_580 0.22 -0.1
672,422 - Pf1N1B4_580 0.23 -0.1
672,422 - Pf1N1B4_580 0.23 +0.2
672,422 - Pf1N1B4_580 0.23 +1.2
672,422 - Pf1N1B4_580 0.23 +0.1
672,422 - Pf1N1B4_580 0.23 +1.0
672,422 - Pf1N1B4_580 0.23 +2.0
673,051 - Pf1N1B4_581 0.24 +1.2
673,078 + Pf1N1B4_581 0.26 +0.4
673,174 - +2.2
673,174 - Pf1N1B4_581 0.30 +0.2
673,174 - Pf1N1B4_581 0.30 -1.2

Or see this region's nucleotide sequence