Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5548 and Pf1N1B4_5549 are separated by 989 nucleotides Pf1N1B4_5549 and Pf1N1B4_5550 are separated by 322 nucleotides
Pf1N1B4_5548 - hypothetical protein, at 318,930 to 319,943
_5548
Pf1N1B4_5549 - hypothetical protein, at 320,933 to 321,061
_5549
Pf1N1B4_5550 - Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific RpoD-like sigma factor, type-7, at 321,384 to 322,937
_5550
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 319.947 kb on + strand at 319.948 kb on - strand at 319.954 kb on - strand at 319.954 kb on - strand at 319.954 kb on - strand at 319.954 kb on - strand at 319.966 kb on + strand at 319.971 kb on + strand at 319.975 kb on - strand at 319.975 kb on - strand at 320.021 kb on + strand at 320.022 kb on - strand at 320.135 kb on + strand at 320.135 kb on + strand at 320.135 kb on + strand at 320.135 kb on + strand at 320.135 kb on + strand at 320.135 kb on + strand at 320.135 kb on + strand at 320.136 kb on - strand at 320.136 kb on - strand at 320.136 kb on - strand at 320.136 kb on - strand at 320.136 kb on - strand at 320.174 kb on + strand at 320.174 kb on + strand at 320.175 kb on - strand at 320.175 kb on - strand at 320.178 kb on + strand at 320.178 kb on + strand at 320.178 kb on + strand at 320.178 kb on + strand at 320.178 kb on + strand at 320.179 kb on - strand at 320.179 kb on - strand at 320.200 kb on - strand at 320.255 kb on + strand at 320.256 kb on - strand at 320.277 kb on - strand at 320.282 kb on - strand at 320.339 kb on + strand at 320.339 kb on + strand at 320.340 kb on - strand at 320.365 kb on + strand at 320.365 kb on + strand at 320.365 kb on + strand at 320.366 kb on - strand at 320.366 kb on - strand at 320.366 kb on - strand at 320.366 kb on - strand at 320.366 kb on - strand at 320.367 kb on + strand at 320.367 kb on + strand at 320.368 kb on - strand at 320.409 kb on - strand at 320.558 kb on + strand at 320.558 kb on + strand at 320.559 kb on - strand at 320.622 kb on + strand at 320.622 kb on + strand at 320.622 kb on + strand at 320.623 kb on - strand at 320.623 kb on - strand at 320.623 kb on - strand at 320.681 kb on + strand at 320.682 kb on - strand at 320.682 kb on - strand at 320.682 kb on - strand at 320.685 kb on + strand at 320.685 kb on + strand at 320.685 kb on + strand at 320.685 kb on + strand at 320.685 kb on + strand at 320.685 kb on + strand at 320.686 kb on - strand at 320.686 kb on - strand at 320.686 kb on - strand at 320.686 kb on - strand at 320.686 kb on - strand at 320.686 kb on - strand at 320.735 kb on - strand at 320.787 kb on + strand at 320.788 kb on - strand at 320.788 kb on - strand at 320.848 kb on + strand at 320.849 kb on - strand at 320.935 kb on - strand at 320.995 kb on + strand, within Pf1N1B4_5549 at 320.995 kb on + strand, within Pf1N1B4_5549 at 320.995 kb on + strand, within Pf1N1B4_5549 at 320.996 kb on - strand, within Pf1N1B4_5549 at 320.996 kb on - strand, within Pf1N1B4_5549 at 320.996 kb on - strand, within Pf1N1B4_5549 at 320.996 kb on - strand, within Pf1N1B4_5549 at 321.053 kb on - strand at 321.053 kb on - strand at 321.208 kb on + strand at 321.223 kb on + strand at 321.427 kb on - strand at 321.427 kb on - strand at 321.435 kb on + strand at 321.595 kb on + strand, within Pf1N1B4_5550 at 321.595 kb on + strand, within Pf1N1B4_5550 at 321.596 kb on - strand, within Pf1N1B4_5550 at 321.596 kb on - strand, within Pf1N1B4_5550 at 321.596 kb on - strand, within Pf1N1B4_5550 at 321.596 kb on - strand, within Pf1N1B4_5550 at 321.596 kb on - strand, within Pf1N1B4_5550 at 321.628 kb on - strand, within Pf1N1B4_5550 at 321.628 kb on - strand, within Pf1N1B4_5550 at 321.724 kb on + strand, within Pf1N1B4_5550 at 321.724 kb on + strand at 321.734 kb on - strand, within Pf1N1B4_5550 at 321.926 kb on - strand, within Pf1N1B4_5550 at 321.926 kb on - strand, within Pf1N1B4_5550 at 321.926 kb on - strand, within Pf1N1B4_5550 at 321.958 kb on + strand, within Pf1N1B4_5550 at 321.959 kb on - strand, within Pf1N1B4_5550 at 321.959 kb on - strand, within Pf1N1B4_5550 at 321.959 kb on - strand, within Pf1N1B4_5550 at 322.013 kb on + strand, within Pf1N1B4_5550 at 322.014 kb on - strand, within Pf1N1B4_5550 at 322.014 kb on - strand, within Pf1N1B4_5550 at 322.014 kb on - strand, within Pf1N1B4_5550 at 322.031 kb on - strand, within Pf1N1B4_5550
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 319,947 + +0.3 319,948 - +0.1 319,954 - -0.2 319,954 - +1.0 319,954 - +0.8 319,954 - -1.0 319,966 + -0.1 319,971 + +0.2 319,975 - +1.2 319,975 - -0.7 320,021 + -1.0 320,022 - +0.6 320,135 + -0.6 320,135 + +0.5 320,135 + +0.4 320,135 + +1.0 320,135 + +0.0 320,135 + +0.5 320,135 + -1.9 320,136 - -0.5 320,136 - -0.9 320,136 - +1.8 320,136 - +0.4 320,136 - +0.2 320,174 + -0.7 320,174 + +1.8 320,175 - +0.8 320,175 - -0.8 320,178 + +0.2 320,178 + +3.4 320,178 + +1.1 320,178 + -1.8 320,178 + +1.2 320,179 - -0.2 320,179 - +0.4 320,200 - +0.6 320,255 + +0.2 320,256 - -0.2 320,277 - -0.2 320,282 - -0.2 320,339 + -1.9 320,339 + +0.6 320,340 - -1.3 320,365 + +1.5 320,365 + -0.0 320,365 + -0.1 320,366 - -0.4 320,366 - +0.8 320,366 - +2.8 320,366 - +0.5 320,366 - +0.2 320,367 + +0.2 320,367 + -0.1 320,368 - +0.8 320,409 - +1.0 320,558 + +0.3 320,558 + -0.3 320,559 - +0.3 320,622 + +0.8 320,622 + -0.8 320,622 + -0.8 320,623 - -0.4 320,623 - -1.7 320,623 - -0.5 320,681 + +0.8 320,682 - -0.2 320,682 - +1.2 320,682 - +0.3 320,685 + -0.8 320,685 + +0.9 320,685 + +0.0 320,685 + +0.8 320,685 + +0.1 320,685 + +0.3 320,686 - -0.1 320,686 - -0.3 320,686 - -0.3 320,686 - -0.2 320,686 - +0.6 320,686 - +0.2 320,735 - +1.0 320,787 + +0.7 320,788 - -0.9 320,788 - +0.8 320,848 + -1.2 320,849 - -0.1 320,935 - +0.4 320,995 + Pf1N1B4_5549 0.48 -0.6 320,995 + Pf1N1B4_5549 0.48 +0.6 320,995 + Pf1N1B4_5549 0.48 +0.8 320,996 - Pf1N1B4_5549 0.49 -2.4 320,996 - Pf1N1B4_5549 0.49 -0.8 320,996 - Pf1N1B4_5549 0.49 +0.1 320,996 - Pf1N1B4_5549 0.49 -1.0 321,053 - +1.0 321,053 - -0.8 321,208 + -0.4 321,223 + +3.1 321,427 - -1.4 321,427 - +1.1 321,435 + +2.1 321,595 + Pf1N1B4_5550 0.14 +1.8 321,595 + Pf1N1B4_5550 0.14 +0.8 321,596 - Pf1N1B4_5550 0.14 -0.2 321,596 - Pf1N1B4_5550 0.14 -0.7 321,596 - Pf1N1B4_5550 0.14 -0.1 321,596 - Pf1N1B4_5550 0.14 -0.4 321,596 - Pf1N1B4_5550 0.14 -0.3 321,628 - Pf1N1B4_5550 0.16 -0.1 321,628 - Pf1N1B4_5550 0.16 +0.5 321,724 + Pf1N1B4_5550 0.22 -0.2 321,724 + -1.2 321,734 - Pf1N1B4_5550 0.23 +1.8 321,926 - Pf1N1B4_5550 0.35 +1.0 321,926 - Pf1N1B4_5550 0.35 -1.4 321,926 - Pf1N1B4_5550 0.35 -0.3 321,958 + Pf1N1B4_5550 0.37 +0.5 321,959 - Pf1N1B4_5550 0.37 +1.8 321,959 - Pf1N1B4_5550 0.37 +0.8 321,959 - Pf1N1B4_5550 0.37 -0.2 322,013 + Pf1N1B4_5550 0.40 +0.8 322,014 - Pf1N1B4_5550 0.41 +0.6 322,014 - Pf1N1B4_5550 0.41 -0.5 322,014 - Pf1N1B4_5550 0.41 +1.4 322,031 - Pf1N1B4_5550 0.42 -0.1
Or see this region's nucleotide sequence