Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5476 and Pf1N1B4_5477 are separated by 90 nucleotides
Pf1N1B4_5476 - hypothetical protein, at 227,952 to 228,143
_5476
Pf1N1B4_5477 - hypothetical protein, at 228,234 to 229,283
_5477
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 227.017 kb on + strand at 227.017 kb on + strand at 227.017 kb on + strand at 227.017 kb on + strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.018 kb on - strand at 227.072 kb on + strand at 227.072 kb on + strand at 227.193 kb on + strand at 227.281 kb on + strand at 227.281 kb on + strand at 227.282 kb on - strand at 227.282 kb on - strand at 227.336 kb on + strand at 227.336 kb on + strand at 227.336 kb on + strand at 227.336 kb on + strand at 227.336 kb on + strand at 227.337 kb on - strand at 227.343 kb on + strand at 227.344 kb on - strand at 227.344 kb on - strand at 227.422 kb on + strand at 227.422 kb on + strand at 227.422 kb on + strand at 227.423 kb on - strand at 227.423 kb on - strand at 227.423 kb on - strand at 227.433 kb on + strand at 227.433 kb on + strand at 227.433 kb on + strand at 227.434 kb on - strand at 227.434 kb on - strand at 227.491 kb on + strand at 227.491 kb on + strand at 227.491 kb on + strand at 227.509 kb on + strand at 227.509 kb on + strand at 227.550 kb on + strand at 227.550 kb on + strand at 227.550 kb on + strand at 227.550 kb on + strand at 227.626 kb on + strand at 227.626 kb on + strand at 227.626 kb on + strand at 227.626 kb on + strand at 227.627 kb on - strand at 227.627 kb on - strand at 227.627 kb on - strand at 227.627 kb on - strand at 227.631 kb on - strand at 227.659 kb on - strand at 227.694 kb on + strand at 227.695 kb on - strand at 227.776 kb on + strand at 227.776 kb on + strand at 227.777 kb on - strand at 227.777 kb on - strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.778 kb on + strand at 227.779 kb on - strand at 227.779 kb on - strand at 227.779 kb on - strand at 227.779 kb on - strand at 227.779 kb on - strand at 227.779 kb on - strand at 227.779 kb on - strand at 228.007 kb on + strand, within Pf1N1B4_5476 at 228.007 kb on + strand at 228.007 kb on + strand, within Pf1N1B4_5476 at 228.007 kb on + strand, within Pf1N1B4_5476 at 228.008 kb on - strand, within Pf1N1B4_5476 at 228.194 kb on + strand at 228.194 kb on + strand at 228.281 kb on + strand at 228.306 kb on + strand at 228.307 kb on - strand at 228.307 kb on - strand at 228.330 kb on + strand at 228.373 kb on + strand, within Pf1N1B4_5477 at 228.374 kb on - strand, within Pf1N1B4_5477 at 228.374 kb on - strand, within Pf1N1B4_5477 at 228.374 kb on - strand, within Pf1N1B4_5477 at 228.446 kb on - strand, within Pf1N1B4_5477 at 228.479 kb on + strand, within Pf1N1B4_5477 at 228.479 kb on + strand, within Pf1N1B4_5477 at 228.479 kb on + strand, within Pf1N1B4_5477 at 228.479 kb on + strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.480 kb on - strand, within Pf1N1B4_5477 at 228.486 kb on + strand, within Pf1N1B4_5477 at 228.487 kb on - strand, within Pf1N1B4_5477 at 228.487 kb on - strand, within Pf1N1B4_5477 at 228.487 kb on - strand at 228.487 kb on - strand, within Pf1N1B4_5477 at 228.487 kb on - strand, within Pf1N1B4_5477 at 228.487 kb on - strand, within Pf1N1B4_5477 at 228.487 kb on - strand, within Pf1N1B4_5477 at 228.498 kb on + strand, within Pf1N1B4_5477 at 228.499 kb on - strand, within Pf1N1B4_5477 at 228.499 kb on - strand at 228.499 kb on - strand, within Pf1N1B4_5477 at 228.499 kb on - strand, within Pf1N1B4_5477 at 228.499 kb on - strand, within Pf1N1B4_5477 at 228.499 kb on - strand at 228.499 kb on - strand, within Pf1N1B4_5477 at 228.499 kb on - strand, within Pf1N1B4_5477 at 228.585 kb on - strand, within Pf1N1B4_5477 at 228.729 kb on - strand, within Pf1N1B4_5477 at 228.729 kb on - strand, within Pf1N1B4_5477 at 228.752 kb on + strand, within Pf1N1B4_5477 at 228.753 kb on - strand at 228.753 kb on - strand, within Pf1N1B4_5477 at 228.781 kb on + strand, within Pf1N1B4_5477 at 228.781 kb on + strand at 228.782 kb on - strand, within Pf1N1B4_5477 at 228.782 kb on - strand, within Pf1N1B4_5477 at 228.782 kb on - strand, within Pf1N1B4_5477 at 228.794 kb on - strand, within Pf1N1B4_5477 at 228.865 kb on - strand, within Pf1N1B4_5477 at 228.865 kb on - strand, within Pf1N1B4_5477 at 228.934 kb on + strand, within Pf1N1B4_5477 at 228.934 kb on + strand, within Pf1N1B4_5477 at 228.934 kb on + strand, within Pf1N1B4_5477 at 228.934 kb on + strand at 228.935 kb on - strand, within Pf1N1B4_5477 at 228.935 kb on - strand, within Pf1N1B4_5477 at 228.935 kb on - strand, within Pf1N1B4_5477 at 228.935 kb on - strand, within Pf1N1B4_5477 at 229.017 kb on - strand, within Pf1N1B4_5477 at 229.017 kb on - strand, within Pf1N1B4_5477 at 229.084 kb on + strand, within Pf1N1B4_5477 at 229.085 kb on - strand, within Pf1N1B4_5477 at 229.085 kb on - strand at 229.085 kb on - strand, within Pf1N1B4_5477 at 229.085 kb on - strand, within Pf1N1B4_5477 at 229.085 kb on - strand, within Pf1N1B4_5477 at 229.085 kb on - strand, within Pf1N1B4_5477
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 227,017 + +0.8 227,017 + +0.4 227,017 + -1.1 227,017 + -0.7 227,018 - -0.4 227,018 - +0.6 227,018 - -0.4 227,018 - +0.8 227,018 - -0.8 227,018 - -0.1 227,018 - +1.8 227,018 - -0.5 227,018 - -1.4 227,018 - +1.2 227,072 + +2.0 227,072 + +0.8 227,193 + +0.8 227,281 + +1.4 227,281 + -0.8 227,282 - -0.2 227,282 - +1.2 227,336 + -0.2 227,336 + -0.0 227,336 + +0.8 227,336 + -0.8 227,336 + -1.2 227,337 - -0.8 227,343 + -1.0 227,344 - -0.1 227,344 - +0.2 227,422 + +0.0 227,422 + +2.2 227,422 + +1.0 227,423 - +2.8 227,423 - +0.8 227,423 - -0.1 227,433 + +0.5 227,433 + -0.5 227,433 + -0.1 227,434 - -0.5 227,434 - -1.4 227,491 + -0.1 227,491 + -0.5 227,491 + +1.8 227,509 + -0.2 227,509 + -0.2 227,550 + -1.5 227,550 + -2.0 227,550 + -0.5 227,550 + -0.1 227,626 + +2.2 227,626 + -0.5 227,626 + +1.8 227,626 + -0.6 227,627 - -0.0 227,627 - -0.1 227,627 - -0.8 227,627 - +0.5 227,631 - +1.8 227,659 - +0.2 227,694 + -0.0 227,695 - -0.0 227,776 + +0.3 227,776 + -1.7 227,777 - +0.0 227,777 - -0.8 227,778 + -0.1 227,778 + -1.2 227,778 + -0.5 227,778 + +0.5 227,778 + +1.1 227,778 + -1.5 227,778 + -1.0 227,778 + +0.8 227,778 + -0.6 227,778 + -0.0 227,778 + -0.5 227,778 + -1.0 227,779 - +0.5 227,779 - +1.1 227,779 - +0.8 227,779 - -0.8 227,779 - -0.9 227,779 - +0.1 227,779 - -1.5 228,007 + Pf1N1B4_5476 0.29 -0.8 228,007 + -0.8 228,007 + Pf1N1B4_5476 0.29 -2.0 228,007 + Pf1N1B4_5476 0.29 -0.3 228,008 - Pf1N1B4_5476 0.29 +0.2 228,194 + -0.5 228,194 + +0.2 228,281 + +0.2 228,306 + -0.8 228,307 - -0.2 228,307 - +1.2 228,330 + +1.8 228,373 + Pf1N1B4_5477 0.13 -0.2 228,374 - Pf1N1B4_5477 0.13 +1.5 228,374 - Pf1N1B4_5477 0.13 -0.2 228,374 - Pf1N1B4_5477 0.13 -0.3 228,446 - Pf1N1B4_5477 0.20 +1.8 228,479 + Pf1N1B4_5477 0.23 -0.3 228,479 + Pf1N1B4_5477 0.23 -1.2 228,479 + Pf1N1B4_5477 0.23 +0.5 228,479 + Pf1N1B4_5477 0.23 -0.4 228,480 - Pf1N1B4_5477 0.23 +1.8 228,480 - Pf1N1B4_5477 0.23 +1.8 228,480 - Pf1N1B4_5477 0.23 +0.2 228,480 - Pf1N1B4_5477 0.23 -0.5 228,480 - Pf1N1B4_5477 0.23 -1.5 228,480 - Pf1N1B4_5477 0.23 -0.5 228,480 - Pf1N1B4_5477 0.23 -0.4 228,480 - Pf1N1B4_5477 0.23 +0.9 228,480 - Pf1N1B4_5477 0.23 +0.5 228,480 - Pf1N1B4_5477 0.23 +0.2 228,480 - Pf1N1B4_5477 0.23 +0.2 228,480 - Pf1N1B4_5477 0.23 -0.2 228,480 - Pf1N1B4_5477 0.23 -1.7 228,480 - Pf1N1B4_5477 0.23 -0.8 228,486 + Pf1N1B4_5477 0.24 +1.4 228,487 - Pf1N1B4_5477 0.24 +0.3 228,487 - Pf1N1B4_5477 0.24 +0.2 228,487 - +1.8 228,487 - Pf1N1B4_5477 0.24 -1.0 228,487 - Pf1N1B4_5477 0.24 +0.4 228,487 - Pf1N1B4_5477 0.24 -0.4 228,487 - Pf1N1B4_5477 0.24 -0.1 228,498 + Pf1N1B4_5477 0.25 +1.2 228,499 - Pf1N1B4_5477 0.25 +2.5 228,499 - +1.2 228,499 - Pf1N1B4_5477 0.25 -0.0 228,499 - Pf1N1B4_5477 0.25 +1.2 228,499 - Pf1N1B4_5477 0.25 +1.2 228,499 - +1.8 228,499 - Pf1N1B4_5477 0.25 -0.7 228,499 - Pf1N1B4_5477 0.25 -0.5 228,585 - Pf1N1B4_5477 0.33 +0.3 228,729 - Pf1N1B4_5477 0.47 -1.0 228,729 - Pf1N1B4_5477 0.47 +2.5 228,752 + Pf1N1B4_5477 0.49 -1.4 228,753 - -0.8 228,753 - Pf1N1B4_5477 0.49 -0.0 228,781 + Pf1N1B4_5477 0.52 +0.8 228,781 + +0.8 228,782 - Pf1N1B4_5477 0.52 -0.7 228,782 - Pf1N1B4_5477 0.52 -0.1 228,782 - Pf1N1B4_5477 0.52 +2.8 228,794 - Pf1N1B4_5477 0.53 -1.2 228,865 - Pf1N1B4_5477 0.60 +0.8 228,865 - Pf1N1B4_5477 0.60 -1.0 228,934 + Pf1N1B4_5477 0.67 -0.8 228,934 + Pf1N1B4_5477 0.67 -0.8 228,934 + Pf1N1B4_5477 0.67 -0.4 228,934 + +1.5 228,935 - Pf1N1B4_5477 0.67 -0.3 228,935 - Pf1N1B4_5477 0.67 -0.2 228,935 - Pf1N1B4_5477 0.67 -0.8 228,935 - Pf1N1B4_5477 0.67 -0.8 229,017 - Pf1N1B4_5477 0.75 +0.8 229,017 - Pf1N1B4_5477 0.75 -0.5 229,084 + Pf1N1B4_5477 0.81 -0.5 229,085 - Pf1N1B4_5477 0.81 -1.7 229,085 - +2.8 229,085 - Pf1N1B4_5477 0.81 +1.4 229,085 - Pf1N1B4_5477 0.81 -0.6 229,085 - Pf1N1B4_5477 0.81 +0.6 229,085 - Pf1N1B4_5477 0.81 -1.7
Or see this region's nucleotide sequence