Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_529 and Pf1N1B4_530 are separated by 78 nucleotides Pf1N1B4_530 and Pf1N1B4_531 are separated by 186 nucleotides Pf1N1B4_531 and Pf1N1B4_532 are separated by 140 nucleotides Pf1N1B4_532 and Pf1N1B4_533 are separated by 104 nucleotides
Pf1N1B4_529 - SoxH protein, homolog, at 629,152 to 629,877
_529
Pf1N1B4_530 - hypothetical protein, at 629,956 to 630,180
_530
Pf1N1B4_531 - hypothetical protein, at 630,367 to 630,495
_531
Pf1N1B4_532 - Transcriptional regulators, LysR family, at 630,636 to 631,529
_532
Pf1N1B4_533 - Possible MFS Superfamily transporter precursor, at 631,634 to 632,824
_533
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 629.704 kb on + strand at 629.705 kb on - strand, within Pf1N1B4_529 at 629.705 kb on - strand, within Pf1N1B4_529 at 629.732 kb on - strand, within Pf1N1B4_529 at 629.732 kb on - strand, within Pf1N1B4_529 at 629.753 kb on - strand, within Pf1N1B4_529 at 629.887 kb on + strand at 629.887 kb on + strand at 629.888 kb on - strand at 629.917 kb on - strand at 629.917 kb on - strand at 629.924 kb on + strand at 629.974 kb on + strand at 629.974 kb on + strand at 629.974 kb on + strand at 629.974 kb on + strand at 629.974 kb on + strand at 629.975 kb on - strand at 629.975 kb on - strand at 629.975 kb on - strand at 629.975 kb on - strand at 629.975 kb on - strand at 630.046 kb on - strand, within Pf1N1B4_530 at 630.195 kb on + strand at 630.557 kb on + strand at 630.558 kb on - strand at 630.558 kb on - strand at 630.570 kb on + strand at 630.607 kb on + strand at 630.607 kb on + strand at 630.674 kb on - strand at 631.186 kb on + strand, within Pf1N1B4_532 at 631.240 kb on + strand at 631.240 kb on + strand at 631.240 kb on + strand, within Pf1N1B4_532 at 631.240 kb on + strand, within Pf1N1B4_532 at 631.240 kb on + strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand at 631.241 kb on - strand, within Pf1N1B4_532 at 631.331 kb on - strand, within Pf1N1B4_532 at 631.793 kb on + strand at 631.793 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand at 632.132 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand at 632.132 kb on + strand, within Pf1N1B4_533 at 632.133 kb on - strand, within Pf1N1B4_533 at 632.133 kb on - strand, within Pf1N1B4_533 at 632.133 kb on - strand, within Pf1N1B4_533 at 632.256 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.262 kb on - strand, within Pf1N1B4_533 at 632.262 kb on - strand, within Pf1N1B4_533 at 632.262 kb on - strand, within Pf1N1B4_533 at 632.270 kb on + strand, within Pf1N1B4_533 at 632.271 kb on - strand, within Pf1N1B4_533 at 632.282 kb on + strand, within Pf1N1B4_533 at 632.450 kb on - strand, within Pf1N1B4_533
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 629,704 + -1.1 629,705 - Pf1N1B4_529 0.76 -1.1 629,705 - Pf1N1B4_529 0.76 -1.1 629,732 - Pf1N1B4_529 0.80 +1.2 629,732 - Pf1N1B4_529 0.80 +2.2 629,753 - Pf1N1B4_529 0.83 +0.3 629,887 + +0.3 629,887 + +1.2 629,888 - -0.9 629,917 - +1.0 629,917 - -1.5 629,924 + +1.8 629,974 + +1.2 629,974 + +1.0 629,974 + +0.8 629,974 + +0.8 629,974 + +0.2 629,975 - -0.6 629,975 - +0.5 629,975 - -2.4 629,975 - +0.1 629,975 - +0.5 630,046 - Pf1N1B4_530 0.40 -0.1 630,195 + +0.4 630,557 + +0.2 630,558 - +0.2 630,558 - +1.8 630,570 + +2.2 630,607 + -1.6 630,607 + +0.2 630,674 - +0.3 631,186 + Pf1N1B4_532 0.62 -1.4 631,240 + +0.2 631,240 + +0.6 631,240 + Pf1N1B4_532 0.68 -0.4 631,240 + Pf1N1B4_532 0.68 -2.4 631,240 + Pf1N1B4_532 0.68 +2.2 631,241 - Pf1N1B4_532 0.68 -1.4 631,241 - Pf1N1B4_532 0.68 +0.2 631,241 - Pf1N1B4_532 0.68 +0.2 631,241 - Pf1N1B4_532 0.68 +0.2 631,241 - Pf1N1B4_532 0.68 -2.1 631,241 - +1.2 631,241 - Pf1N1B4_532 0.68 +0.7 631,331 - Pf1N1B4_532 0.78 -0.4 631,793 + +1.2 631,793 + Pf1N1B4_533 0.13 +0.6 632,132 + Pf1N1B4_533 0.42 +0.2 632,132 + +3.2 632,132 + Pf1N1B4_533 0.42 -1.4 632,132 + Pf1N1B4_533 0.42 -1.8 632,132 + Pf1N1B4_533 0.42 -1.2 632,132 + -1.8 632,132 + Pf1N1B4_533 0.42 -0.1 632,133 - Pf1N1B4_533 0.42 -1.4 632,133 - Pf1N1B4_533 0.42 -0.2 632,133 - Pf1N1B4_533 0.42 -1.2 632,256 + Pf1N1B4_533 0.52 +0.2 632,261 + Pf1N1B4_533 0.53 -0.1 632,261 + Pf1N1B4_533 0.53 -0.2 632,261 + Pf1N1B4_533 0.53 -0.4 632,261 + Pf1N1B4_533 0.53 -1.9 632,261 + Pf1N1B4_533 0.53 +0.1 632,261 + Pf1N1B4_533 0.53 -0.1 632,262 - Pf1N1B4_533 0.53 -0.0 632,262 - Pf1N1B4_533 0.53 +0.2 632,262 - Pf1N1B4_533 0.53 +0.5 632,270 + Pf1N1B4_533 0.53 -0.7 632,271 - Pf1N1B4_533 0.53 -1.1 632,282 + Pf1N1B4_533 0.54 -0.8 632,450 - Pf1N1B4_533 0.69 -1.1
Or see this region's nucleotide sequence