Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5096 and Pf1N1B4_5097 are separated by 135 nucleotides Pf1N1B4_5097 and Pf1N1B4_5098 are separated by 64 nucleotides Pf1N1B4_5098 and Pf1N1B4_5099 are separated by 145 nucleotides
Pf1N1B4_5096 - Nitrate ABC transporter, nitrate-binding protein, at 5,649,738 to 5,651,024
_5096
Pf1N1B4_5097 - Cyanate ABC transporter, permease protein, at 5,651,160 to 5,651,891
_5097
Pf1N1B4_5098 - Nitrate ABC transporter, ATP-binding protein, at 5,651,956 to 5,652,747
_5098
Pf1N1B4_5099 - Proline iminopeptidase (EC 3.4.11.5), at 5,652,893 to 5,653,837
_5099
Position (kb)
5651
5652
5653 Strain fitness (log2 ratio)
-2
-1
0
1 at 5650.995 kb on + strand at 5651.195 kb on + strand at 5651.441 kb on - strand at 5651.441 kb on - strand, within Pf1N1B4_5097 at 5653.207 kb on - strand, within Pf1N1B4_5099 at 5653.241 kb on - strand, within Pf1N1B4_5099 at 5653.528 kb on - strand, within Pf1N1B4_5099 at 5653.689 kb on + strand, within Pf1N1B4_5099 at 5653.690 kb on - strand at 5653.690 kb on - strand, within Pf1N1B4_5099 at 5653.690 kb on - strand, within Pf1N1B4_5099 at 5653.690 kb on - strand, within Pf1N1B4_5099 at 5653.702 kb on - strand, within Pf1N1B4_5099
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 5,650,995 + -0.9 5,651,195 + -0.0 5,651,441 - +0.7 5,651,441 - Pf1N1B4_5097 0.38 +0.1 5,653,207 - Pf1N1B4_5099 0.33 +1.4 5,653,241 - Pf1N1B4_5099 0.37 -1.8 5,653,528 - Pf1N1B4_5099 0.67 -0.1 5,653,689 + Pf1N1B4_5099 0.84 -0.3 5,653,690 - -1.3 5,653,690 - Pf1N1B4_5099 0.84 -0.9 5,653,690 - Pf1N1B4_5099 0.84 +1.3 5,653,690 - Pf1N1B4_5099 0.84 +0.9 5,653,702 - Pf1N1B4_5099 0.86 -0.7
Or see this region's nucleotide sequence