Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4961 and Pf1N1B4_4962 are separated by 193 nucleotides Pf1N1B4_4962 and Pf1N1B4_4963 are separated by 233 nucleotides
Pf1N1B4_4961 - FIG00441227: hypothetical protein, at 5,501,835 to 5,502,554
_4961
Pf1N1B4_4962 - C4-dicarboxylate transport protein, at 5,502,748 to 5,504,055
_4962
Pf1N1B4_4963 - Tricarboxylate transport protein TctC, at 5,504,289 to 5,505,254
_4963
Position (kb) 5502
5503
5504
5505 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5501.824 kb on - strand at 5501.824 kb on - strand at 5501.824 kb on - strand at 5501.835 kb on - strand at 5502.057 kb on + strand at 5502.268 kb on - strand, within Pf1N1B4_4961 at 5502.377 kb on - strand, within Pf1N1B4_4961 at 5502.436 kb on - strand, within Pf1N1B4_4961 at 5502.459 kb on + strand, within Pf1N1B4_4961 at 5502.459 kb on + strand, within Pf1N1B4_4961 at 5502.537 kb on + strand at 5502.537 kb on + strand at 5502.537 kb on + strand at 5502.537 kb on + strand at 5502.538 kb on - strand at 5502.538 kb on - strand at 5502.538 kb on - strand at 5502.557 kb on + strand at 5502.657 kb on + strand at 5502.686 kb on - strand at 5502.729 kb on - strand at 5502.747 kb on + strand at 5502.814 kb on + strand at 5502.868 kb on + strand at 5502.868 kb on + strand at 5502.961 kb on - strand, within Pf1N1B4_4962 at 5503.613 kb on + strand at 5503.613 kb on + strand, within Pf1N1B4_4962 at 5503.614 kb on - strand, within Pf1N1B4_4962 at 5503.681 kb on + strand, within Pf1N1B4_4962 at 5503.681 kb on + strand, within Pf1N1B4_4962 at 5503.682 kb on - strand, within Pf1N1B4_4962 at 5503.682 kb on - strand, within Pf1N1B4_4962 at 5503.682 kb on - strand, within Pf1N1B4_4962 at 5503.884 kb on + strand, within Pf1N1B4_4962 at 5504.076 kb on + strand at 5504.076 kb on + strand at 5504.198 kb on + strand at 5504.198 kb on + strand at 5504.198 kb on + strand at 5504.199 kb on - strand at 5504.199 kb on - strand at 5504.199 kb on - strand at 5504.199 kb on - strand at 5504.205 kb on + strand at 5504.205 kb on + strand at 5504.205 kb on + strand at 5504.206 kb on - strand at 5504.206 kb on - strand at 5504.206 kb on - strand at 5504.211 kb on + strand at 5504.416 kb on - strand, within Pf1N1B4_4963 at 5504.659 kb on - strand, within Pf1N1B4_4963 at 5504.659 kb on - strand, within Pf1N1B4_4963 at 5504.835 kb on + strand, within Pf1N1B4_4963 at 5504.836 kb on - strand, within Pf1N1B4_4963 at 5504.929 kb on - strand, within Pf1N1B4_4963 at 5504.929 kb on - strand, within Pf1N1B4_4963 at 5505.019 kb on - strand, within Pf1N1B4_4963
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 5,501,824 - -2.0 5,501,824 - +1.1 5,501,824 - -1.6 5,501,835 - +0.9 5,502,057 + +0.7 5,502,268 - Pf1N1B4_4961 0.60 -0.9 5,502,377 - Pf1N1B4_4961 0.75 -0.1 5,502,436 - Pf1N1B4_4961 0.83 -0.8 5,502,459 + Pf1N1B4_4961 0.87 +0.3 5,502,459 + Pf1N1B4_4961 0.87 -0.9 5,502,537 + -0.6 5,502,537 + +0.1 5,502,537 + -0.5 5,502,537 + +3.5 5,502,538 - -0.1 5,502,538 - +0.7 5,502,538 - -0.2 5,502,557 + +0.3 5,502,657 + -0.7 5,502,686 - +0.1 5,502,729 - -0.6 5,502,747 + +0.4 5,502,814 + -0.2 5,502,868 + +0.5 5,502,868 + -0.6 5,502,961 - Pf1N1B4_4962 0.16 -1.4 5,503,613 + +1.3 5,503,613 + Pf1N1B4_4962 0.66 -2.1 5,503,614 - Pf1N1B4_4962 0.66 +0.7 5,503,681 + Pf1N1B4_4962 0.71 +0.7 5,503,681 + Pf1N1B4_4962 0.71 -2.3 5,503,682 - Pf1N1B4_4962 0.71 -0.6 5,503,682 - Pf1N1B4_4962 0.71 +0.7 5,503,682 - Pf1N1B4_4962 0.71 -0.3 5,503,884 + Pf1N1B4_4962 0.87 -1.1 5,504,076 + -0.6 5,504,076 + -0.3 5,504,198 + -1.1 5,504,198 + -0.1 5,504,198 + -1.6 5,504,199 - +0.1 5,504,199 - +1.1 5,504,199 - +0.7 5,504,199 - -1.9 5,504,205 + -0.4 5,504,205 + -1.6 5,504,205 + +0.3 5,504,206 - -1.9 5,504,206 - -0.3 5,504,206 - -1.0 5,504,211 + -0.6 5,504,416 - Pf1N1B4_4963 0.13 +1.0 5,504,659 - Pf1N1B4_4963 0.38 -0.5 5,504,659 - Pf1N1B4_4963 0.38 +0.1 5,504,835 + Pf1N1B4_4963 0.57 -1.9 5,504,836 - Pf1N1B4_4963 0.57 +0.2 5,504,929 - Pf1N1B4_4963 0.66 -1.6 5,504,929 - Pf1N1B4_4963 0.66 +0.5 5,505,019 - Pf1N1B4_4963 0.76 +0.1
Or see this region's nucleotide sequence