Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4275 and Pf1N1B4_4276 overlap by 4 nucleotides Pf1N1B4_4276 and Pf1N1B4_4277 are separated by 44 nucleotides Pf1N1B4_4277 and Pf1N1B4_4278 are separated by 26 nucleotides Pf1N1B4_4278 and Pf1N1B4_4279 are separated by 151 nucleotides
Pf1N1B4_4275 - Inosose dehydratase (EC 4.2.1.44), at 4,740,508 to 4,741,401
_4275
Pf1N1B4_4276 - 5-deoxy-glucuronate isomerase (EC 5.3.1.-), at 4,741,398 to 4,742,207
_4276
Pf1N1B4_4277 - Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27), at 4,742,252 to 4,743,754
_4277
Pf1N1B4_4278 - Inosose isomerase (EC 5.3.99.-), at 4,743,781 to 4,744,602
_4278
Pf1N1B4_4279 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) <small>(from data)</small>, at 4,744,754 to 4,746,685
_4279
Position (kb) 4742
4743
4744 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4741.336 kb on + strand at 4741.467 kb on + strand at 4741.468 kb on - strand at 4741.468 kb on - strand at 4741.662 kb on + strand, within Pf1N1B4_4276 at 4741.822 kb on - strand at 4741.908 kb on + strand, within Pf1N1B4_4276 at 4741.968 kb on + strand, within Pf1N1B4_4276 at 4741.968 kb on + strand, within Pf1N1B4_4276 at 4741.968 kb on + strand, within Pf1N1B4_4276 at 4741.968 kb on + strand, within Pf1N1B4_4276 at 4741.968 kb on + strand, within Pf1N1B4_4276 at 4741.969 kb on - strand, within Pf1N1B4_4276 at 4741.969 kb on - strand at 4741.971 kb on + strand, within Pf1N1B4_4276 at 4742.124 kb on + strand, within Pf1N1B4_4276 at 4742.124 kb on + strand, within Pf1N1B4_4276 at 4742.125 kb on - strand, within Pf1N1B4_4276 at 4742.127 kb on + strand at 4742.280 kb on - strand at 4742.295 kb on + strand at 4742.295 kb on + strand at 4742.824 kb on - strand, within Pf1N1B4_4277 at 4742.862 kb on + strand, within Pf1N1B4_4277 at 4742.862 kb on + strand, within Pf1N1B4_4277 at 4742.862 kb on + strand, within Pf1N1B4_4277 at 4742.863 kb on - strand at 4742.954 kb on + strand, within Pf1N1B4_4277 at 4742.991 kb on + strand, within Pf1N1B4_4277 at 4743.019 kb on + strand, within Pf1N1B4_4277 at 4743.019 kb on + strand, within Pf1N1B4_4277 at 4743.019 kb on + strand, within Pf1N1B4_4277 at 4743.019 kb on + strand, within Pf1N1B4_4277 at 4743.019 kb on + strand, within Pf1N1B4_4277 at 4743.395 kb on + strand, within Pf1N1B4_4277 at 4743.395 kb on + strand, within Pf1N1B4_4277 at 4743.395 kb on + strand, within Pf1N1B4_4277 at 4743.395 kb on + strand, within Pf1N1B4_4277 at 4743.395 kb on + strand, within Pf1N1B4_4277 at 4743.396 kb on - strand, within Pf1N1B4_4277 at 4743.396 kb on - strand, within Pf1N1B4_4277 at 4743.574 kb on - strand, within Pf1N1B4_4277 at 4743.647 kb on + strand at 4743.671 kb on + strand at 4743.752 kb on + strand at 4743.753 kb on - strand at 4744.051 kb on + strand, within Pf1N1B4_4278 at 4744.051 kb on + strand, within Pf1N1B4_4278
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,741,336 + -0.2 4,741,467 + +0.0 4,741,468 - -0.2 4,741,468 - -0.2 4,741,662 + Pf1N1B4_4276 0.33 +0.4 4,741,822 - -0.2 4,741,908 + Pf1N1B4_4276 0.63 -1.0 4,741,968 + Pf1N1B4_4276 0.70 +0.5 4,741,968 + Pf1N1B4_4276 0.70 +0.1 4,741,968 + Pf1N1B4_4276 0.70 +0.8 4,741,968 + Pf1N1B4_4276 0.70 -0.0 4,741,968 + Pf1N1B4_4276 0.70 +0.2 4,741,969 - Pf1N1B4_4276 0.70 +0.1 4,741,969 - -0.2 4,741,971 + Pf1N1B4_4276 0.71 -0.3 4,742,124 + Pf1N1B4_4276 0.90 +0.8 4,742,124 + Pf1N1B4_4276 0.90 -0.9 4,742,125 - Pf1N1B4_4276 0.90 -0.5 4,742,127 + +1.3 4,742,280 - -0.2 4,742,295 + -0.5 4,742,295 + +0.2 4,742,824 - Pf1N1B4_4277 0.38 -0.2 4,742,862 + Pf1N1B4_4277 0.41 -0.3 4,742,862 + Pf1N1B4_4277 0.41 +0.5 4,742,862 + Pf1N1B4_4277 0.41 -0.8 4,742,863 - -0.5 4,742,954 + Pf1N1B4_4277 0.47 -2.0 4,742,991 + Pf1N1B4_4277 0.49 +2.1 4,743,019 + Pf1N1B4_4277 0.51 +0.4 4,743,019 + Pf1N1B4_4277 0.51 -0.8 4,743,019 + Pf1N1B4_4277 0.51 +0.6 4,743,019 + Pf1N1B4_4277 0.51 -0.2 4,743,019 + Pf1N1B4_4277 0.51 +0.2 4,743,395 + Pf1N1B4_4277 0.76 +0.2 4,743,395 + Pf1N1B4_4277 0.76 +0.0 4,743,395 + Pf1N1B4_4277 0.76 +0.8 4,743,395 + Pf1N1B4_4277 0.76 +0.5 4,743,395 + Pf1N1B4_4277 0.76 -0.2 4,743,396 - Pf1N1B4_4277 0.76 +0.4 4,743,396 - Pf1N1B4_4277 0.76 +0.6 4,743,574 - Pf1N1B4_4277 0.88 +0.5 4,743,647 + +1.1 4,743,671 + +0.7 4,743,752 + +0.6 4,743,753 - -0.6 4,744,051 + Pf1N1B4_4278 0.33 +1.2 4,744,051 + Pf1N1B4_4278 0.33 -0.6
Or see this region's nucleotide sequence