Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4248

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4247 and Pf1N1B4_4248 are separated by 161 nucleotidesPf1N1B4_4248 and Pf1N1B4_4249 are separated by 111 nucleotides Pf1N1B4_4247 - D-aminopeptidase (EC 3.4.11.19), at 4,708,822 to 4,709,937 _4247 Pf1N1B4_4248 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 4,710,099 to 4,711,202 _4248 Pf1N1B4_4249 - transcriptional regulator, LuxR family, at 4,711,314 to 4,712,087 _4249 Position (kb) 4710 4711 4712Strain fitness (log2 ratio) -1 0 1 2at 4709.500 kb on + strand, within Pf1N1B4_4247at 4709.500 kb on + strand, within Pf1N1B4_4247at 4709.500 kb on + strand, within Pf1N1B4_4247at 4709.501 kb on - strand, within Pf1N1B4_4247at 4709.798 kb on + strand, within Pf1N1B4_4247at 4709.798 kb on + strand, within Pf1N1B4_4247at 4709.798 kb on + strand, within Pf1N1B4_4247at 4709.798 kb on + strand, within Pf1N1B4_4247at 4709.799 kb on - strand, within Pf1N1B4_4247at 4709.799 kb on - strand, within Pf1N1B4_4247at 4709.986 kb on + strandat 4710.094 kb on + strandat 4710.320 kb on - strand, within Pf1N1B4_4248at 4710.544 kb on + strand, within Pf1N1B4_4248at 4710.593 kb on - strandat 4710.823 kb on + strand, within Pf1N1B4_4248at 4711.090 kb on + strand, within Pf1N1B4_4248at 4711.097 kb on - strandat 4711.551 kb on + strand, within Pf1N1B4_4249at 4711.551 kb on + strand, within Pf1N1B4_4249at 4711.650 kb on + strand, within Pf1N1B4_4249at 4711.650 kb on + strand, within Pf1N1B4_4249at 4711.650 kb on + strand, within Pf1N1B4_4249at 4711.650 kb on + strand, within Pf1N1B4_4249at 4711.653 kb on + strand, within Pf1N1B4_4249at 4711.653 kb on + strand, within Pf1N1B4_4249at 4711.653 kb on + strand, within Pf1N1B4_4249at 4711.662 kb on + strandat 4711.663 kb on - strand, within Pf1N1B4_4249at 4711.663 kb on - strand, within Pf1N1B4_4249at 4711.985 kb on + strand, within Pf1N1B4_4249at 4711.985 kb on + strand, within Pf1N1B4_4249at 4712.036 kb on + strandat 4712.036 kb on + strandat 4712.036 kb on + strandat 4712.037 kb on - strandat 4712.037 kb on - strandat 4712.123 kb on + strandat 4712.123 kb on + strandat 4712.123 kb on + strandat 4712.123 kb on + strandat 4712.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,709,500 + Pf1N1B4_4247 0.61 +0.8
4,709,500 + Pf1N1B4_4247 0.61 +1.2
4,709,500 + Pf1N1B4_4247 0.61 +1.1
4,709,501 - Pf1N1B4_4247 0.61 -0.9
4,709,798 + Pf1N1B4_4247 0.87 -1.0
4,709,798 + Pf1N1B4_4247 0.87 -0.0
4,709,798 + Pf1N1B4_4247 0.87 +0.5
4,709,798 + Pf1N1B4_4247 0.87 -0.0
4,709,799 - Pf1N1B4_4247 0.88 +0.1
4,709,799 - Pf1N1B4_4247 0.88 +0.4
4,709,986 + -1.2
4,710,094 + -1.2
4,710,320 - Pf1N1B4_4248 0.20 -0.2
4,710,544 + Pf1N1B4_4248 0.40 +0.0
4,710,593 - -1.5
4,710,823 + Pf1N1B4_4248 0.66 -0.1
4,711,090 + Pf1N1B4_4248 0.90 -0.3
4,711,097 - -0.5
4,711,551 + Pf1N1B4_4249 0.31 -0.0
4,711,551 + Pf1N1B4_4249 0.31 -1.2
4,711,650 + Pf1N1B4_4249 0.43 -1.3
4,711,650 + Pf1N1B4_4249 0.43 -1.2
4,711,650 + Pf1N1B4_4249 0.43 +1.1
4,711,650 + Pf1N1B4_4249 0.43 -1.5
4,711,653 + Pf1N1B4_4249 0.44 -0.8
4,711,653 + Pf1N1B4_4249 0.44 +0.2
4,711,653 + Pf1N1B4_4249 0.44 +0.6
4,711,662 + +2.1
4,711,663 - Pf1N1B4_4249 0.45 +1.0
4,711,663 - Pf1N1B4_4249 0.45 +0.1
4,711,985 + Pf1N1B4_4249 0.87 +1.1
4,711,985 + Pf1N1B4_4249 0.87 -0.2
4,712,036 + +0.1
4,712,036 + -0.4
4,712,036 + -0.8
4,712,037 - +0.8
4,712,037 - -1.2
4,712,123 + +0.8
4,712,123 + +0.8
4,712,123 + +0.4
4,712,123 + +0.4
4,712,150 - +1.2

Or see this region's nucleotide sequence