Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3777

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_3775 and Pf1N1B4_3776 are separated by 131 nucleotidesPf1N1B4_3776 and Pf1N1B4_3777 are separated by 238 nucleotidesPf1N1B4_3777 and Pf1N1B4_3778 are separated by 126 nucleotides Pf1N1B4_3775 - FIG00956876: hypothetical protein, at 4,184,777 to 4,185,097 _3775 Pf1N1B4_3776 - Isochorismatase (EC 3.3.2.1), at 4,185,229 to 4,185,819 _3776 Pf1N1B4_3777 - Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p, at 4,186,058 to 4,186,966 _3777 Pf1N1B4_3778 - FIG00957914: hypothetical protein, at 4,187,093 to 4,187,884 _3778 Position (kb) 4186 4187Strain fitness (log2 ratio) -2 -1 0 1 2at 4185.893 kb on + strandat 4185.893 kb on + strandat 4185.894 kb on - strandat 4185.947 kb on - strandat 4185.947 kb on - strandat 4185.963 kb on - strandat 4185.973 kb on + strandat 4185.973 kb on + strandat 4185.974 kb on - strandat 4185.974 kb on - strandat 4185.974 kb on - strandat 4186.023 kb on + strandat 4186.094 kb on - strandat 4186.219 kb on + strand, within Pf1N1B4_3777at 4186.219 kb on + strand, within Pf1N1B4_3777at 4186.219 kb on + strand, within Pf1N1B4_3777at 4186.219 kb on + strand, within Pf1N1B4_3777at 4186.219 kb on + strand, within Pf1N1B4_3777at 4186.220 kb on - strand, within Pf1N1B4_3777at 4186.220 kb on - strand, within Pf1N1B4_3777at 4186.223 kb on + strand, within Pf1N1B4_3777at 4186.223 kb on + strandat 4186.223 kb on + strand, within Pf1N1B4_3777at 4186.223 kb on + strandat 4186.223 kb on + strand, within Pf1N1B4_3777at 4186.223 kb on + strandat 4186.224 kb on - strand, within Pf1N1B4_3777at 4186.310 kb on + strand, within Pf1N1B4_3777at 4186.339 kb on + strand, within Pf1N1B4_3777at 4186.446 kb on + strand, within Pf1N1B4_3777at 4186.446 kb on + strand, within Pf1N1B4_3777at 4186.447 kb on - strand, within Pf1N1B4_3777at 4186.447 kb on - strand, within Pf1N1B4_3777at 4187.022 kb on - strandat 4187.159 kb on - strandat 4187.159 kb on - strandat 4187.164 kb on + strandat 4187.165 kb on - strandat 4187.165 kb on - strandat 4187.165 kb on - strandat 4187.193 kb on + strand, within Pf1N1B4_3778at 4187.194 kb on - strand, within Pf1N1B4_3778at 4187.383 kb on - strand, within Pf1N1B4_3778at 4187.484 kb on + strand, within Pf1N1B4_3778at 4187.484 kb on + strand, within Pf1N1B4_3778at 4187.512 kb on + strand, within Pf1N1B4_3778at 4187.512 kb on + strand, within Pf1N1B4_3778at 4187.512 kb on + strand, within Pf1N1B4_3778at 4187.513 kb on - strand, within Pf1N1B4_3778at 4187.513 kb on - strand, within Pf1N1B4_3778at 4187.530 kb on + strand, within Pf1N1B4_3778at 4187.531 kb on - strand, within Pf1N1B4_3778at 4187.532 kb on + strand, within Pf1N1B4_3778at 4187.532 kb on + strand, within Pf1N1B4_3778at 4187.532 kb on + strand, within Pf1N1B4_3778at 4187.532 kb on + strand, within Pf1N1B4_3778at 4187.532 kb on + strand, within Pf1N1B4_3778at 4187.532 kb on + strand, within Pf1N1B4_3778at 4187.532 kb on + strand, within Pf1N1B4_3778at 4187.532 kb on + strand, within Pf1N1B4_3778at 4187.533 kb on + strand, within Pf1N1B4_3778at 4187.533 kb on - strand, within Pf1N1B4_3778at 4187.533 kb on - strandat 4187.699 kb on - strand, within Pf1N1B4_3778at 4187.699 kb on - strand, within Pf1N1B4_3778at 4187.926 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
4,185,893 + -0.9
4,185,893 + +0.8
4,185,894 - -0.2
4,185,947 - -1.1
4,185,947 - -1.5
4,185,963 - -0.6
4,185,973 + -0.5
4,185,973 + -1.2
4,185,974 - -0.1
4,185,974 - -1.1
4,185,974 - +0.4
4,186,023 + -0.5
4,186,094 - -1.2
4,186,219 + Pf1N1B4_3777 0.18 -0.3
4,186,219 + Pf1N1B4_3777 0.18 +0.1
4,186,219 + Pf1N1B4_3777 0.18 -0.5
4,186,219 + Pf1N1B4_3777 0.18 -0.3
4,186,219 + Pf1N1B4_3777 0.18 -0.9
4,186,220 - Pf1N1B4_3777 0.18 -0.1
4,186,220 - Pf1N1B4_3777 0.18 -1.5
4,186,223 + Pf1N1B4_3777 0.18 -1.0
4,186,223 + +1.1
4,186,223 + Pf1N1B4_3777 0.18 -1.9
4,186,223 + +1.1
4,186,223 + Pf1N1B4_3777 0.18 -0.8
4,186,223 + -1.5
4,186,224 - Pf1N1B4_3777 0.18 -2.2
4,186,310 + Pf1N1B4_3777 0.28 -1.5
4,186,339 + Pf1N1B4_3777 0.31 -0.2
4,186,446 + Pf1N1B4_3777 0.43 -0.4
4,186,446 + Pf1N1B4_3777 0.43 -0.2
4,186,447 - Pf1N1B4_3777 0.43 +0.7
4,186,447 - Pf1N1B4_3777 0.43 -2.6
4,187,022 - -0.3
4,187,159 - -1.7
4,187,159 - -2.6
4,187,164 + +1.3
4,187,165 - -0.6
4,187,165 - -1.2
4,187,165 - +2.1
4,187,193 + Pf1N1B4_3778 0.13 +0.6
4,187,194 - Pf1N1B4_3778 0.13 +0.6
4,187,383 - Pf1N1B4_3778 0.37 -0.6
4,187,484 + Pf1N1B4_3778 0.49 -2.1
4,187,484 + Pf1N1B4_3778 0.49 +0.3
4,187,512 + Pf1N1B4_3778 0.53 -1.5
4,187,512 + Pf1N1B4_3778 0.53 +0.7
4,187,512 + Pf1N1B4_3778 0.53 -0.2
4,187,513 - Pf1N1B4_3778 0.53 -0.5
4,187,513 - Pf1N1B4_3778 0.53 -0.5
4,187,530 + Pf1N1B4_3778 0.55 -0.5
4,187,531 - Pf1N1B4_3778 0.55 -0.9
4,187,532 + Pf1N1B4_3778 0.55 +1.7
4,187,532 + Pf1N1B4_3778 0.55 -0.6
4,187,532 + Pf1N1B4_3778 0.55 +1.9
4,187,532 + Pf1N1B4_3778 0.55 -0.3
4,187,532 + Pf1N1B4_3778 0.55 -0.5
4,187,532 + Pf1N1B4_3778 0.55 +0.8
4,187,532 + Pf1N1B4_3778 0.55 +0.8
4,187,532 + Pf1N1B4_3778 0.55 +0.4
4,187,533 + Pf1N1B4_3778 0.56 +1.1
4,187,533 - Pf1N1B4_3778 0.56 -0.1
4,187,533 - +0.1
4,187,699 - Pf1N1B4_3778 0.77 -0.7
4,187,699 - Pf1N1B4_3778 0.77 +0.5
4,187,926 - -0.5

Or see this region's nucleotide sequence