Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3775 and Pf1N1B4_3776 are separated by 131 nucleotides Pf1N1B4_3776 and Pf1N1B4_3777 are separated by 238 nucleotides Pf1N1B4_3777 and Pf1N1B4_3778 are separated by 126 nucleotides
Pf1N1B4_3775 - FIG00956876: hypothetical protein, at 4,184,777 to 4,185,097
_3775
Pf1N1B4_3776 - Isochorismatase (EC 3.3.2.1), at 4,185,229 to 4,185,819
_3776
Pf1N1B4_3777 - Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p, at 4,186,058 to 4,186,966
_3777
Pf1N1B4_3778 - FIG00957914: hypothetical protein, at 4,187,093 to 4,187,884
_3778
Position (kb)
4186
4187 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4185.893 kb on + strand at 4185.893 kb on + strand at 4185.894 kb on - strand at 4185.947 kb on - strand at 4185.947 kb on - strand at 4185.963 kb on - strand at 4185.973 kb on + strand at 4185.973 kb on + strand at 4185.974 kb on - strand at 4185.974 kb on - strand at 4185.974 kb on - strand at 4186.023 kb on + strand at 4186.094 kb on - strand at 4186.219 kb on + strand, within Pf1N1B4_3777 at 4186.219 kb on + strand, within Pf1N1B4_3777 at 4186.219 kb on + strand, within Pf1N1B4_3777 at 4186.219 kb on + strand, within Pf1N1B4_3777 at 4186.219 kb on + strand, within Pf1N1B4_3777 at 4186.220 kb on - strand, within Pf1N1B4_3777 at 4186.220 kb on - strand, within Pf1N1B4_3777 at 4186.223 kb on + strand, within Pf1N1B4_3777 at 4186.223 kb on + strand at 4186.223 kb on + strand, within Pf1N1B4_3777 at 4186.223 kb on + strand at 4186.223 kb on + strand, within Pf1N1B4_3777 at 4186.223 kb on + strand at 4186.224 kb on - strand, within Pf1N1B4_3777 at 4186.310 kb on + strand, within Pf1N1B4_3777 at 4186.339 kb on + strand, within Pf1N1B4_3777 at 4186.446 kb on + strand, within Pf1N1B4_3777 at 4186.446 kb on + strand, within Pf1N1B4_3777 at 4186.447 kb on - strand, within Pf1N1B4_3777 at 4186.447 kb on - strand, within Pf1N1B4_3777 at 4187.022 kb on - strand at 4187.159 kb on - strand at 4187.159 kb on - strand at 4187.164 kb on + strand at 4187.165 kb on - strand at 4187.165 kb on - strand at 4187.165 kb on - strand at 4187.193 kb on + strand, within Pf1N1B4_3778 at 4187.194 kb on - strand, within Pf1N1B4_3778 at 4187.383 kb on - strand, within Pf1N1B4_3778 at 4187.484 kb on + strand, within Pf1N1B4_3778 at 4187.484 kb on + strand, within Pf1N1B4_3778 at 4187.512 kb on + strand, within Pf1N1B4_3778 at 4187.512 kb on + strand, within Pf1N1B4_3778 at 4187.512 kb on + strand, within Pf1N1B4_3778 at 4187.513 kb on - strand, within Pf1N1B4_3778 at 4187.513 kb on - strand, within Pf1N1B4_3778 at 4187.530 kb on + strand, within Pf1N1B4_3778 at 4187.531 kb on - strand, within Pf1N1B4_3778 at 4187.532 kb on + strand, within Pf1N1B4_3778 at 4187.532 kb on + strand, within Pf1N1B4_3778 at 4187.532 kb on + strand, within Pf1N1B4_3778 at 4187.532 kb on + strand, within Pf1N1B4_3778 at 4187.532 kb on + strand, within Pf1N1B4_3778 at 4187.532 kb on + strand, within Pf1N1B4_3778 at 4187.532 kb on + strand, within Pf1N1B4_3778 at 4187.532 kb on + strand, within Pf1N1B4_3778 at 4187.533 kb on + strand, within Pf1N1B4_3778 at 4187.533 kb on - strand, within Pf1N1B4_3778 at 4187.533 kb on - strand at 4187.699 kb on - strand, within Pf1N1B4_3778 at 4187.699 kb on - strand, within Pf1N1B4_3778 at 4187.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,185,893 + -0.9 4,185,893 + +0.8 4,185,894 - -0.2 4,185,947 - -1.1 4,185,947 - -1.5 4,185,963 - -0.6 4,185,973 + -0.5 4,185,973 + -1.2 4,185,974 - -0.1 4,185,974 - -1.1 4,185,974 - +0.4 4,186,023 + -0.5 4,186,094 - -1.2 4,186,219 + Pf1N1B4_3777 0.18 -0.3 4,186,219 + Pf1N1B4_3777 0.18 +0.1 4,186,219 + Pf1N1B4_3777 0.18 -0.5 4,186,219 + Pf1N1B4_3777 0.18 -0.3 4,186,219 + Pf1N1B4_3777 0.18 -0.9 4,186,220 - Pf1N1B4_3777 0.18 -0.1 4,186,220 - Pf1N1B4_3777 0.18 -1.5 4,186,223 + Pf1N1B4_3777 0.18 -1.0 4,186,223 + +1.1 4,186,223 + Pf1N1B4_3777 0.18 -1.9 4,186,223 + +1.1 4,186,223 + Pf1N1B4_3777 0.18 -0.8 4,186,223 + -1.5 4,186,224 - Pf1N1B4_3777 0.18 -2.2 4,186,310 + Pf1N1B4_3777 0.28 -1.5 4,186,339 + Pf1N1B4_3777 0.31 -0.2 4,186,446 + Pf1N1B4_3777 0.43 -0.4 4,186,446 + Pf1N1B4_3777 0.43 -0.2 4,186,447 - Pf1N1B4_3777 0.43 +0.7 4,186,447 - Pf1N1B4_3777 0.43 -2.6 4,187,022 - -0.3 4,187,159 - -1.7 4,187,159 - -2.6 4,187,164 + +1.3 4,187,165 - -0.6 4,187,165 - -1.2 4,187,165 - +2.1 4,187,193 + Pf1N1B4_3778 0.13 +0.6 4,187,194 - Pf1N1B4_3778 0.13 +0.6 4,187,383 - Pf1N1B4_3778 0.37 -0.6 4,187,484 + Pf1N1B4_3778 0.49 -2.1 4,187,484 + Pf1N1B4_3778 0.49 +0.3 4,187,512 + Pf1N1B4_3778 0.53 -1.5 4,187,512 + Pf1N1B4_3778 0.53 +0.7 4,187,512 + Pf1N1B4_3778 0.53 -0.2 4,187,513 - Pf1N1B4_3778 0.53 -0.5 4,187,513 - Pf1N1B4_3778 0.53 -0.5 4,187,530 + Pf1N1B4_3778 0.55 -0.5 4,187,531 - Pf1N1B4_3778 0.55 -0.9 4,187,532 + Pf1N1B4_3778 0.55 +1.7 4,187,532 + Pf1N1B4_3778 0.55 -0.6 4,187,532 + Pf1N1B4_3778 0.55 +1.9 4,187,532 + Pf1N1B4_3778 0.55 -0.3 4,187,532 + Pf1N1B4_3778 0.55 -0.5 4,187,532 + Pf1N1B4_3778 0.55 +0.8 4,187,532 + Pf1N1B4_3778 0.55 +0.8 4,187,532 + Pf1N1B4_3778 0.55 +0.4 4,187,533 + Pf1N1B4_3778 0.56 +1.1 4,187,533 - Pf1N1B4_3778 0.56 -0.1 4,187,533 - +0.1 4,187,699 - Pf1N1B4_3778 0.77 -0.7 4,187,699 - Pf1N1B4_3778 0.77 +0.5 4,187,926 - -0.5
Or see this region's nucleotide sequence