Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2539

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2538 and Pf1N1B4_2539 are separated by 49 nucleotidesPf1N1B4_2539 and Pf1N1B4_2540 are separated by 198 nucleotides Pf1N1B4_2538 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 2,879,841 to 2,880,965 _2538 Pf1N1B4_2539 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 2,881,015 to 2,882,058 _2539 Pf1N1B4_2540 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 2,882,257 to 2,883,504 _2540 Position (kb) 2881 2882 2883Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2880.126 kb on + strand, within Pf1N1B4_2538at 2880.127 kb on - strand, within Pf1N1B4_2538at 2880.127 kb on - strand, within Pf1N1B4_2538at 2880.127 kb on - strand, within Pf1N1B4_2538at 2880.127 kb on - strand, within Pf1N1B4_2538at 2880.127 kb on - strand, within Pf1N1B4_2538at 2880.441 kb on + strand, within Pf1N1B4_2538at 2880.441 kb on + strand, within Pf1N1B4_2538at 2880.441 kb on + strand, within Pf1N1B4_2538at 2880.442 kb on - strandat 2880.540 kb on + strand, within Pf1N1B4_2538at 2880.540 kb on + strand, within Pf1N1B4_2538at 2880.541 kb on - strand, within Pf1N1B4_2538at 2880.795 kb on + strand, within Pf1N1B4_2538at 2880.795 kb on + strand, within Pf1N1B4_2538at 2880.795 kb on + strand, within Pf1N1B4_2538at 2880.795 kb on + strand, within Pf1N1B4_2538at 2880.795 kb on + strand, within Pf1N1B4_2538at 2880.795 kb on + strand, within Pf1N1B4_2538at 2880.795 kb on + strand, within Pf1N1B4_2538at 2880.796 kb on - strandat 2880.952 kb on + strandat 2881.012 kb on + strandat 2881.012 kb on + strandat 2881.012 kb on + strandat 2881.012 kb on + strandat 2881.012 kb on + strandat 2881.012 kb on + strandat 2881.012 kb on + strandat 2881.012 kb on + strandat 2881.012 kb on + strandat 2881.013 kb on - strandat 2881.013 kb on - strandat 2881.013 kb on - strandat 2881.013 kb on - strandat 2881.013 kb on - strandat 2881.013 kb on - strandat 2881.013 kb on - strandat 2881.147 kb on + strand, within Pf1N1B4_2539at 2881.148 kb on - strand, within Pf1N1B4_2539at 2881.148 kb on - strand, within Pf1N1B4_2539at 2881.195 kb on + strand, within Pf1N1B4_2539at 2881.195 kb on + strand, within Pf1N1B4_2539at 2881.195 kb on + strand, within Pf1N1B4_2539at 2881.259 kb on + strand, within Pf1N1B4_2539at 2881.260 kb on - strandat 2881.348 kb on + strand, within Pf1N1B4_2539at 2881.349 kb on - strand, within Pf1N1B4_2539at 2881.510 kb on + strand, within Pf1N1B4_2539at 2881.510 kb on + strand, within Pf1N1B4_2539at 2881.510 kb on + strand, within Pf1N1B4_2539at 2881.511 kb on - strand, within Pf1N1B4_2539at 2881.561 kb on + strand, within Pf1N1B4_2539at 2881.561 kb on + strand, within Pf1N1B4_2539at 2881.568 kb on + strand, within Pf1N1B4_2539at 2881.568 kb on + strand, within Pf1N1B4_2539at 2881.568 kb on + strand, within Pf1N1B4_2539at 2881.666 kb on + strand, within Pf1N1B4_2539at 2881.702 kb on + strand, within Pf1N1B4_2539at 2881.768 kb on + strand, within Pf1N1B4_2539at 2881.769 kb on - strand, within Pf1N1B4_2539at 2881.873 kb on + strand, within Pf1N1B4_2539at 2881.874 kb on - strand, within Pf1N1B4_2539at 2882.057 kb on - strandat 2882.065 kb on + strandat 2882.065 kb on + strandat 2882.251 kb on + strandat 2882.251 kb on + strandat 2882.252 kb on - strandat 2882.252 kb on - strandat 2882.252 kb on - strandat 2882.252 kb on - strandat 2882.417 kb on - strand, within Pf1N1B4_2540at 2882.417 kb on - strand, within Pf1N1B4_2540at 2882.417 kb on - strand, within Pf1N1B4_2540at 2882.417 kb on - strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.515 kb on + strand, within Pf1N1B4_2540at 2882.516 kb on - strand, within Pf1N1B4_2540at 2882.516 kb on - strand, within Pf1N1B4_2540at 2882.516 kb on - strand, within Pf1N1B4_2540at 2882.516 kb on - strand, within Pf1N1B4_2540at 2882.516 kb on - strand, within Pf1N1B4_2540at 2882.516 kb on - strand, within Pf1N1B4_2540at 2882.517 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.665 kb on + strand, within Pf1N1B4_2540at 2882.666 kb on - strand, within Pf1N1B4_2540at 2882.666 kb on - strand, within Pf1N1B4_2540at 2882.666 kb on - strand, within Pf1N1B4_2540at 2882.666 kb on - strandat 2882.668 kb on - strand, within Pf1N1B4_2540at 2882.668 kb on - strand, within Pf1N1B4_2540at 2882.713 kb on + strand, within Pf1N1B4_2540at 2882.742 kb on + strandat 2882.742 kb on + strand, within Pf1N1B4_2540at 2882.755 kb on + strand, within Pf1N1B4_2540at 2882.755 kb on + strand, within Pf1N1B4_2540at 2882.755 kb on + strand, within Pf1N1B4_2540at 2882.755 kb on + strand, within Pf1N1B4_2540at 2882.755 kb on + strand, within Pf1N1B4_2540at 2882.756 kb on - strand, within Pf1N1B4_2540at 2882.758 kb on + strand, within Pf1N1B4_2540at 2882.759 kb on - strand, within Pf1N1B4_2540at 2882.833 kb on + strand, within Pf1N1B4_2540at 2882.833 kb on + strand, within Pf1N1B4_2540at 2882.833 kb on + strand, within Pf1N1B4_2540at 2882.834 kb on - strand, within Pf1N1B4_2540at 2882.915 kb on - strand, within Pf1N1B4_2540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,880,126 + Pf1N1B4_2538 0.25 -0.6
2,880,127 - Pf1N1B4_2538 0.25 -0.1
2,880,127 - Pf1N1B4_2538 0.25 +0.3
2,880,127 - Pf1N1B4_2538 0.25 -0.2
2,880,127 - Pf1N1B4_2538 0.25 +0.3
2,880,127 - Pf1N1B4_2538 0.25 -0.2
2,880,441 + Pf1N1B4_2538 0.53 -0.0
2,880,441 + Pf1N1B4_2538 0.53 -0.8
2,880,441 + Pf1N1B4_2538 0.53 +0.4
2,880,442 - +0.3
2,880,540 + Pf1N1B4_2538 0.62 +0.3
2,880,540 + Pf1N1B4_2538 0.62 -1.6
2,880,541 - Pf1N1B4_2538 0.62 +1.6
2,880,795 + Pf1N1B4_2538 0.85 -0.0
2,880,795 + Pf1N1B4_2538 0.85 -0.1
2,880,795 + Pf1N1B4_2538 0.85 -0.0
2,880,795 + Pf1N1B4_2538 0.85 -1.3
2,880,795 + Pf1N1B4_2538 0.85 -1.7
2,880,795 + Pf1N1B4_2538 0.85 -1.2
2,880,795 + Pf1N1B4_2538 0.85 +0.6
2,880,796 - +0.6
2,880,952 + +1.6
2,881,012 + -0.5
2,881,012 + -0.1
2,881,012 + -0.7
2,881,012 + -0.1
2,881,012 + -0.0
2,881,012 + -0.4
2,881,012 + +0.6
2,881,012 + +0.4
2,881,012 + +0.4
2,881,013 - -1.4
2,881,013 - -0.0
2,881,013 - -1.0
2,881,013 - -1.9
2,881,013 - -1.6
2,881,013 - -1.6
2,881,013 - -0.4
2,881,147 + Pf1N1B4_2539 0.13 +1.4
2,881,148 - Pf1N1B4_2539 0.13 +0.7
2,881,148 - Pf1N1B4_2539 0.13 -1.2
2,881,195 + Pf1N1B4_2539 0.17 -0.9
2,881,195 + Pf1N1B4_2539 0.17 -0.4
2,881,195 + Pf1N1B4_2539 0.17 +0.7
2,881,259 + Pf1N1B4_2539 0.23 +1.3
2,881,260 - -0.4
2,881,348 + Pf1N1B4_2539 0.32 -0.4
2,881,349 - Pf1N1B4_2539 0.32 +0.6
2,881,510 + Pf1N1B4_2539 0.47 -0.4
2,881,510 + Pf1N1B4_2539 0.47 +0.5
2,881,510 + Pf1N1B4_2539 0.47 +0.8
2,881,511 - Pf1N1B4_2539 0.48 -1.4
2,881,561 + Pf1N1B4_2539 0.52 +0.1
2,881,561 + Pf1N1B4_2539 0.52 -0.1
2,881,568 + Pf1N1B4_2539 0.53 +1.4
2,881,568 + Pf1N1B4_2539 0.53 +0.6
2,881,568 + Pf1N1B4_2539 0.53 -0.6
2,881,666 + Pf1N1B4_2539 0.62 -0.0
2,881,702 + Pf1N1B4_2539 0.66 -1.2
2,881,768 + Pf1N1B4_2539 0.72 +0.8
2,881,769 - Pf1N1B4_2539 0.72 -0.7
2,881,873 + Pf1N1B4_2539 0.82 +1.8
2,881,874 - Pf1N1B4_2539 0.82 -1.0
2,882,057 - -1.0
2,882,065 + +0.2
2,882,065 + +1.3
2,882,251 + -1.2
2,882,251 + -1.2
2,882,252 - -3.3
2,882,252 - -2.0
2,882,252 - -2.1
2,882,252 - +0.4
2,882,417 - Pf1N1B4_2540 0.13 -1.9
2,882,417 - Pf1N1B4_2540 0.13 -2.0
2,882,417 - Pf1N1B4_2540 0.13 -0.4
2,882,417 - Pf1N1B4_2540 0.13 -1.6
2,882,515 + Pf1N1B4_2540 0.21 -2.0
2,882,515 + Pf1N1B4_2540 0.21 -1.6
2,882,515 + Pf1N1B4_2540 0.21 -1.9
2,882,515 + Pf1N1B4_2540 0.21 -1.4
2,882,515 + Pf1N1B4_2540 0.21 -0.6
2,882,515 + Pf1N1B4_2540 0.21 -1.9
2,882,515 + Pf1N1B4_2540 0.21 -0.4
2,882,515 + Pf1N1B4_2540 0.21 -1.4
2,882,515 + Pf1N1B4_2540 0.21 -0.9
2,882,515 + Pf1N1B4_2540 0.21 -2.8
2,882,516 - Pf1N1B4_2540 0.21 +0.3
2,882,516 - Pf1N1B4_2540 0.21 -1.9
2,882,516 - Pf1N1B4_2540 0.21 -1.6
2,882,516 - Pf1N1B4_2540 0.21 -0.0
2,882,516 - Pf1N1B4_2540 0.21 -1.4
2,882,516 - Pf1N1B4_2540 0.21 -1.7
2,882,517 + Pf1N1B4_2540 0.21 +0.6
2,882,665 + Pf1N1B4_2540 0.33 -1.7
2,882,665 + Pf1N1B4_2540 0.33 -1.2
2,882,665 + Pf1N1B4_2540 0.33 -0.2
2,882,665 + Pf1N1B4_2540 0.33 -0.4
2,882,665 + Pf1N1B4_2540 0.33 -2.3
2,882,665 + Pf1N1B4_2540 0.33 -0.4
2,882,665 + Pf1N1B4_2540 0.33 -2.6
2,882,665 + Pf1N1B4_2540 0.33 -2.3
2,882,665 + Pf1N1B4_2540 0.33 -2.3
2,882,665 + Pf1N1B4_2540 0.33 -3.3
2,882,665 + Pf1N1B4_2540 0.33 -2.4
2,882,665 + Pf1N1B4_2540 0.33 -0.2
2,882,665 + Pf1N1B4_2540 0.33 +0.3
2,882,666 - Pf1N1B4_2540 0.33 -3.1
2,882,666 - Pf1N1B4_2540 0.33 +0.6
2,882,666 - Pf1N1B4_2540 0.33 +0.6
2,882,666 - +2.6
2,882,668 - Pf1N1B4_2540 0.33 -0.7
2,882,668 - Pf1N1B4_2540 0.33 -0.4
2,882,713 + Pf1N1B4_2540 0.37 -1.7
2,882,742 + +0.6
2,882,742 + Pf1N1B4_2540 0.39 -2.9
2,882,755 + Pf1N1B4_2540 0.40 -1.0
2,882,755 + Pf1N1B4_2540 0.40 -0.7
2,882,755 + Pf1N1B4_2540 0.40 -1.0
2,882,755 + Pf1N1B4_2540 0.40 -2.6
2,882,755 + Pf1N1B4_2540 0.40 -1.7
2,882,756 - Pf1N1B4_2540 0.40 -1.7
2,882,758 + Pf1N1B4_2540 0.40 -1.4
2,882,759 - Pf1N1B4_2540 0.40 -3.2
2,882,833 + Pf1N1B4_2540 0.46 -2.4
2,882,833 + Pf1N1B4_2540 0.46 -1.4
2,882,833 + Pf1N1B4_2540 0.46 -1.4
2,882,834 - Pf1N1B4_2540 0.46 -1.5
2,882,915 - Pf1N1B4_2540 0.53 -2.1

Or see this region's nucleotide sequence