Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2538 and Pf1N1B4_2539 are separated by 49 nucleotides Pf1N1B4_2539 and Pf1N1B4_2540 are separated by 198 nucleotides
Pf1N1B4_2538 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 2,879,841 to 2,880,965
_2538
Pf1N1B4_2539 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 2,881,015 to 2,882,058
_2539
Pf1N1B4_2540 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 2,882,257 to 2,883,504
_2540
Position (kb)
2881
2882
2883 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2880.126 kb on + strand, within Pf1N1B4_2538 at 2880.127 kb on - strand, within Pf1N1B4_2538 at 2880.127 kb on - strand, within Pf1N1B4_2538 at 2880.127 kb on - strand, within Pf1N1B4_2538 at 2880.127 kb on - strand, within Pf1N1B4_2538 at 2880.127 kb on - strand, within Pf1N1B4_2538 at 2880.441 kb on + strand, within Pf1N1B4_2538 at 2880.441 kb on + strand, within Pf1N1B4_2538 at 2880.441 kb on + strand, within Pf1N1B4_2538 at 2880.442 kb on - strand at 2880.540 kb on + strand, within Pf1N1B4_2538 at 2880.540 kb on + strand, within Pf1N1B4_2538 at 2880.541 kb on - strand, within Pf1N1B4_2538 at 2880.795 kb on + strand, within Pf1N1B4_2538 at 2880.795 kb on + strand, within Pf1N1B4_2538 at 2880.795 kb on + strand, within Pf1N1B4_2538 at 2880.795 kb on + strand, within Pf1N1B4_2538 at 2880.795 kb on + strand, within Pf1N1B4_2538 at 2880.795 kb on + strand, within Pf1N1B4_2538 at 2880.795 kb on + strand, within Pf1N1B4_2538 at 2880.796 kb on - strand at 2880.952 kb on + strand at 2881.012 kb on + strand at 2881.012 kb on + strand at 2881.012 kb on + strand at 2881.012 kb on + strand at 2881.012 kb on + strand at 2881.012 kb on + strand at 2881.012 kb on + strand at 2881.012 kb on + strand at 2881.012 kb on + strand at 2881.013 kb on - strand at 2881.013 kb on - strand at 2881.013 kb on - strand at 2881.013 kb on - strand at 2881.013 kb on - strand at 2881.013 kb on - strand at 2881.013 kb on - strand at 2881.147 kb on + strand, within Pf1N1B4_2539 at 2881.148 kb on - strand, within Pf1N1B4_2539 at 2881.148 kb on - strand, within Pf1N1B4_2539 at 2881.195 kb on + strand, within Pf1N1B4_2539 at 2881.195 kb on + strand, within Pf1N1B4_2539 at 2881.195 kb on + strand, within Pf1N1B4_2539 at 2881.259 kb on + strand, within Pf1N1B4_2539 at 2881.260 kb on - strand at 2881.348 kb on + strand, within Pf1N1B4_2539 at 2881.349 kb on - strand, within Pf1N1B4_2539 at 2881.510 kb on + strand, within Pf1N1B4_2539 at 2881.510 kb on + strand, within Pf1N1B4_2539 at 2881.510 kb on + strand, within Pf1N1B4_2539 at 2881.511 kb on - strand, within Pf1N1B4_2539 at 2881.561 kb on + strand, within Pf1N1B4_2539 at 2881.561 kb on + strand, within Pf1N1B4_2539 at 2881.568 kb on + strand, within Pf1N1B4_2539 at 2881.568 kb on + strand, within Pf1N1B4_2539 at 2881.568 kb on + strand, within Pf1N1B4_2539 at 2881.666 kb on + strand, within Pf1N1B4_2539 at 2881.702 kb on + strand, within Pf1N1B4_2539 at 2881.768 kb on + strand, within Pf1N1B4_2539 at 2881.769 kb on - strand, within Pf1N1B4_2539 at 2881.873 kb on + strand, within Pf1N1B4_2539 at 2881.874 kb on - strand, within Pf1N1B4_2539 at 2882.057 kb on - strand at 2882.065 kb on + strand at 2882.065 kb on + strand at 2882.251 kb on + strand at 2882.251 kb on + strand at 2882.252 kb on - strand at 2882.252 kb on - strand at 2882.252 kb on - strand at 2882.252 kb on - strand at 2882.417 kb on - strand, within Pf1N1B4_2540 at 2882.417 kb on - strand, within Pf1N1B4_2540 at 2882.417 kb on - strand, within Pf1N1B4_2540 at 2882.417 kb on - strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.515 kb on + strand, within Pf1N1B4_2540 at 2882.516 kb on - strand, within Pf1N1B4_2540 at 2882.516 kb on - strand, within Pf1N1B4_2540 at 2882.516 kb on - strand, within Pf1N1B4_2540 at 2882.516 kb on - strand, within Pf1N1B4_2540 at 2882.516 kb on - strand, within Pf1N1B4_2540 at 2882.516 kb on - strand, within Pf1N1B4_2540 at 2882.517 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.665 kb on + strand, within Pf1N1B4_2540 at 2882.666 kb on - strand, within Pf1N1B4_2540 at 2882.666 kb on - strand, within Pf1N1B4_2540 at 2882.666 kb on - strand, within Pf1N1B4_2540 at 2882.666 kb on - strand at 2882.668 kb on - strand, within Pf1N1B4_2540 at 2882.668 kb on - strand, within Pf1N1B4_2540 at 2882.713 kb on + strand, within Pf1N1B4_2540 at 2882.742 kb on + strand at 2882.742 kb on + strand, within Pf1N1B4_2540 at 2882.755 kb on + strand, within Pf1N1B4_2540 at 2882.755 kb on + strand, within Pf1N1B4_2540 at 2882.755 kb on + strand, within Pf1N1B4_2540 at 2882.755 kb on + strand, within Pf1N1B4_2540 at 2882.755 kb on + strand, within Pf1N1B4_2540 at 2882.756 kb on - strand, within Pf1N1B4_2540 at 2882.758 kb on + strand, within Pf1N1B4_2540 at 2882.759 kb on - strand, within Pf1N1B4_2540 at 2882.833 kb on + strand, within Pf1N1B4_2540 at 2882.833 kb on + strand, within Pf1N1B4_2540 at 2882.833 kb on + strand, within Pf1N1B4_2540 at 2882.834 kb on - strand, within Pf1N1B4_2540 at 2882.915 kb on - strand, within Pf1N1B4_2540
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,880,126 + Pf1N1B4_2538 0.25 -0.6 2,880,127 - Pf1N1B4_2538 0.25 -0.1 2,880,127 - Pf1N1B4_2538 0.25 +0.3 2,880,127 - Pf1N1B4_2538 0.25 -0.2 2,880,127 - Pf1N1B4_2538 0.25 +0.3 2,880,127 - Pf1N1B4_2538 0.25 -0.2 2,880,441 + Pf1N1B4_2538 0.53 -0.0 2,880,441 + Pf1N1B4_2538 0.53 -0.8 2,880,441 + Pf1N1B4_2538 0.53 +0.4 2,880,442 - +0.3 2,880,540 + Pf1N1B4_2538 0.62 +0.3 2,880,540 + Pf1N1B4_2538 0.62 -1.6 2,880,541 - Pf1N1B4_2538 0.62 +1.6 2,880,795 + Pf1N1B4_2538 0.85 -0.0 2,880,795 + Pf1N1B4_2538 0.85 -0.1 2,880,795 + Pf1N1B4_2538 0.85 -0.0 2,880,795 + Pf1N1B4_2538 0.85 -1.3 2,880,795 + Pf1N1B4_2538 0.85 -1.7 2,880,795 + Pf1N1B4_2538 0.85 -1.2 2,880,795 + Pf1N1B4_2538 0.85 +0.6 2,880,796 - +0.6 2,880,952 + +1.6 2,881,012 + -0.5 2,881,012 + -0.1 2,881,012 + -0.7 2,881,012 + -0.1 2,881,012 + -0.0 2,881,012 + -0.4 2,881,012 + +0.6 2,881,012 + +0.4 2,881,012 + +0.4 2,881,013 - -1.4 2,881,013 - -0.0 2,881,013 - -1.0 2,881,013 - -1.9 2,881,013 - -1.6 2,881,013 - -1.6 2,881,013 - -0.4 2,881,147 + Pf1N1B4_2539 0.13 +1.4 2,881,148 - Pf1N1B4_2539 0.13 +0.7 2,881,148 - Pf1N1B4_2539 0.13 -1.2 2,881,195 + Pf1N1B4_2539 0.17 -0.9 2,881,195 + Pf1N1B4_2539 0.17 -0.4 2,881,195 + Pf1N1B4_2539 0.17 +0.7 2,881,259 + Pf1N1B4_2539 0.23 +1.3 2,881,260 - -0.4 2,881,348 + Pf1N1B4_2539 0.32 -0.4 2,881,349 - Pf1N1B4_2539 0.32 +0.6 2,881,510 + Pf1N1B4_2539 0.47 -0.4 2,881,510 + Pf1N1B4_2539 0.47 +0.5 2,881,510 + Pf1N1B4_2539 0.47 +0.8 2,881,511 - Pf1N1B4_2539 0.48 -1.4 2,881,561 + Pf1N1B4_2539 0.52 +0.1 2,881,561 + Pf1N1B4_2539 0.52 -0.1 2,881,568 + Pf1N1B4_2539 0.53 +1.4 2,881,568 + Pf1N1B4_2539 0.53 +0.6 2,881,568 + Pf1N1B4_2539 0.53 -0.6 2,881,666 + Pf1N1B4_2539 0.62 -0.0 2,881,702 + Pf1N1B4_2539 0.66 -1.2 2,881,768 + Pf1N1B4_2539 0.72 +0.8 2,881,769 - Pf1N1B4_2539 0.72 -0.7 2,881,873 + Pf1N1B4_2539 0.82 +1.8 2,881,874 - Pf1N1B4_2539 0.82 -1.0 2,882,057 - -1.0 2,882,065 + +0.2 2,882,065 + +1.3 2,882,251 + -1.2 2,882,251 + -1.2 2,882,252 - -3.3 2,882,252 - -2.0 2,882,252 - -2.1 2,882,252 - +0.4 2,882,417 - Pf1N1B4_2540 0.13 -1.9 2,882,417 - Pf1N1B4_2540 0.13 -2.0 2,882,417 - Pf1N1B4_2540 0.13 -0.4 2,882,417 - Pf1N1B4_2540 0.13 -1.6 2,882,515 + Pf1N1B4_2540 0.21 -2.0 2,882,515 + Pf1N1B4_2540 0.21 -1.6 2,882,515 + Pf1N1B4_2540 0.21 -1.9 2,882,515 + Pf1N1B4_2540 0.21 -1.4 2,882,515 + Pf1N1B4_2540 0.21 -0.6 2,882,515 + Pf1N1B4_2540 0.21 -1.9 2,882,515 + Pf1N1B4_2540 0.21 -0.4 2,882,515 + Pf1N1B4_2540 0.21 -1.4 2,882,515 + Pf1N1B4_2540 0.21 -0.9 2,882,515 + Pf1N1B4_2540 0.21 -2.8 2,882,516 - Pf1N1B4_2540 0.21 +0.3 2,882,516 - Pf1N1B4_2540 0.21 -1.9 2,882,516 - Pf1N1B4_2540 0.21 -1.6 2,882,516 - Pf1N1B4_2540 0.21 -0.0 2,882,516 - Pf1N1B4_2540 0.21 -1.4 2,882,516 - Pf1N1B4_2540 0.21 -1.7 2,882,517 + Pf1N1B4_2540 0.21 +0.6 2,882,665 + Pf1N1B4_2540 0.33 -1.7 2,882,665 + Pf1N1B4_2540 0.33 -1.2 2,882,665 + Pf1N1B4_2540 0.33 -0.2 2,882,665 + Pf1N1B4_2540 0.33 -0.4 2,882,665 + Pf1N1B4_2540 0.33 -2.3 2,882,665 + Pf1N1B4_2540 0.33 -0.4 2,882,665 + Pf1N1B4_2540 0.33 -2.6 2,882,665 + Pf1N1B4_2540 0.33 -2.3 2,882,665 + Pf1N1B4_2540 0.33 -2.3 2,882,665 + Pf1N1B4_2540 0.33 -3.3 2,882,665 + Pf1N1B4_2540 0.33 -2.4 2,882,665 + Pf1N1B4_2540 0.33 -0.2 2,882,665 + Pf1N1B4_2540 0.33 +0.3 2,882,666 - Pf1N1B4_2540 0.33 -3.1 2,882,666 - Pf1N1B4_2540 0.33 +0.6 2,882,666 - Pf1N1B4_2540 0.33 +0.6 2,882,666 - +2.6 2,882,668 - Pf1N1B4_2540 0.33 -0.7 2,882,668 - Pf1N1B4_2540 0.33 -0.4 2,882,713 + Pf1N1B4_2540 0.37 -1.7 2,882,742 + +0.6 2,882,742 + Pf1N1B4_2540 0.39 -2.9 2,882,755 + Pf1N1B4_2540 0.40 -1.0 2,882,755 + Pf1N1B4_2540 0.40 -0.7 2,882,755 + Pf1N1B4_2540 0.40 -1.0 2,882,755 + Pf1N1B4_2540 0.40 -2.6 2,882,755 + Pf1N1B4_2540 0.40 -1.7 2,882,756 - Pf1N1B4_2540 0.40 -1.7 2,882,758 + Pf1N1B4_2540 0.40 -1.4 2,882,759 - Pf1N1B4_2540 0.40 -3.2 2,882,833 + Pf1N1B4_2540 0.46 -2.4 2,882,833 + Pf1N1B4_2540 0.46 -1.4 2,882,833 + Pf1N1B4_2540 0.46 -1.4 2,882,834 - Pf1N1B4_2540 0.46 -1.5 2,882,915 - Pf1N1B4_2540 0.53 -2.1
Or see this region's nucleotide sequence