Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2263

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2261 and Pf1N1B4_2262 overlap by 4 nucleotidesPf1N1B4_2262 and Pf1N1B4_2263 overlap by 4 nucleotidesPf1N1B4_2263 and Pf1N1B4_2264 are separated by 226 nucleotides Pf1N1B4_2261 - Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2), at 2,577,454 to 2,578,596 _2261 Pf1N1B4_2262 - Lysine ABC transporter, permease component (from data), at 2,578,593 to 2,579,513 _2262 Pf1N1B4_2263 - Putrescine transport system permease protein PotI (TC 3.A.1.11.2), at 2,579,510 to 2,580,400 _2263 Pf1N1B4_2264 - Penicillin acylase II (EC 3.5.1.11), at 2,580,627 to 2,583,038 _2264 Position (kb) 2579 2580 2581Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2578.552 kb on + strandat 2578.552 kb on + strandat 2578.552 kb on + strandat 2578.552 kb on + strandat 2578.552 kb on + strandat 2578.552 kb on + strandat 2578.552 kb on + strandat 2578.552 kb on + strandat 2578.552 kb on + strandat 2578.553 kb on - strandat 2578.553 kb on - strandat 2578.553 kb on - strandat 2578.553 kb on - strandat 2578.553 kb on - strandat 2578.573 kb on - strandat 2578.583 kb on + strandat 2578.583 kb on + strandat 2578.583 kb on + strandat 2578.583 kb on + strandat 2578.584 kb on - strandat 2578.584 kb on - strandat 2578.584 kb on - strandat 2578.630 kb on + strandat 2578.630 kb on + strandat 2578.630 kb on + strandat 2578.630 kb on + strandat 2578.756 kb on - strand, within Pf1N1B4_2262at 2578.767 kb on + strand, within Pf1N1B4_2262at 2578.767 kb on + strand, within Pf1N1B4_2262at 2578.767 kb on + strand, within Pf1N1B4_2262at 2578.767 kb on + strand, within Pf1N1B4_2262at 2578.767 kb on + strand, within Pf1N1B4_2262at 2578.767 kb on + strand, within Pf1N1B4_2262at 2578.767 kb on + strand, within Pf1N1B4_2262at 2578.767 kb on + strand, within Pf1N1B4_2262at 2578.768 kb on - strand, within Pf1N1B4_2262at 2578.768 kb on - strand, within Pf1N1B4_2262at 2578.768 kb on - strand, within Pf1N1B4_2262at 2578.768 kb on - strand, within Pf1N1B4_2262at 2578.768 kb on - strand, within Pf1N1B4_2262at 2578.803 kb on - strand, within Pf1N1B4_2262at 2578.803 kb on - strand, within Pf1N1B4_2262at 2578.815 kb on + strandat 2578.815 kb on + strand, within Pf1N1B4_2262at 2578.815 kb on + strand, within Pf1N1B4_2262at 2578.815 kb on + strand, within Pf1N1B4_2262at 2578.815 kb on + strand, within Pf1N1B4_2262at 2578.815 kb on + strand, within Pf1N1B4_2262at 2578.815 kb on + strand, within Pf1N1B4_2262at 2578.816 kb on - strand, within Pf1N1B4_2262at 2578.842 kb on + strand, within Pf1N1B4_2262at 2578.842 kb on + strand, within Pf1N1B4_2262at 2578.842 kb on + strand, within Pf1N1B4_2262at 2578.842 kb on + strand, within Pf1N1B4_2262at 2578.842 kb on + strand, within Pf1N1B4_2262at 2578.842 kb on + strand, within Pf1N1B4_2262at 2578.842 kb on + strand, within Pf1N1B4_2262at 2578.842 kb on + strand, within Pf1N1B4_2262at 2578.843 kb on - strand, within Pf1N1B4_2262at 2578.843 kb on - strand, within Pf1N1B4_2262at 2578.843 kb on - strand, within Pf1N1B4_2262at 2578.843 kb on - strand, within Pf1N1B4_2262at 2578.843 kb on - strand, within Pf1N1B4_2262at 2578.843 kb on - strand, within Pf1N1B4_2262at 2578.854 kb on + strand, within Pf1N1B4_2262at 2578.855 kb on - strand, within Pf1N1B4_2262at 2578.924 kb on - strand, within Pf1N1B4_2262at 2579.013 kb on + strand, within Pf1N1B4_2262at 2579.014 kb on - strand, within Pf1N1B4_2262at 2579.014 kb on - strand, within Pf1N1B4_2262at 2579.014 kb on - strand, within Pf1N1B4_2262at 2579.121 kb on + strand, within Pf1N1B4_2262at 2579.122 kb on - strand, within Pf1N1B4_2262at 2579.122 kb on - strand, within Pf1N1B4_2262at 2579.122 kb on - strand, within Pf1N1B4_2262at 2579.136 kb on + strand, within Pf1N1B4_2262at 2579.136 kb on + strand, within Pf1N1B4_2262at 2579.137 kb on - strand, within Pf1N1B4_2262at 2579.137 kb on - strand, within Pf1N1B4_2262at 2579.137 kb on - strand, within Pf1N1B4_2262at 2579.142 kb on + strand, within Pf1N1B4_2262at 2579.142 kb on + strand, within Pf1N1B4_2262at 2579.142 kb on + strand, within Pf1N1B4_2262at 2579.143 kb on - strand, within Pf1N1B4_2262at 2579.143 kb on - strand, within Pf1N1B4_2262at 2579.480 kb on + strandat 2579.481 kb on - strandat 2579.481 kb on - strandat 2579.564 kb on + strandat 2579.564 kb on + strandat 2579.564 kb on + strandat 2579.564 kb on + strandat 2579.564 kb on + strandat 2579.591 kb on + strandat 2579.592 kb on - strandat 2579.592 kb on - strandat 2579.592 kb on - strandat 2579.648 kb on + strand, within Pf1N1B4_2263at 2579.648 kb on + strand, within Pf1N1B4_2263at 2579.648 kb on + strand, within Pf1N1B4_2263at 2579.649 kb on - strand, within Pf1N1B4_2263at 2579.714 kb on + strand, within Pf1N1B4_2263at 2579.770 kb on + strand, within Pf1N1B4_2263at 2579.954 kb on + strand, within Pf1N1B4_2263at 2579.955 kb on - strand, within Pf1N1B4_2263at 2579.955 kb on - strand, within Pf1N1B4_2263at 2579.955 kb on - strand, within Pf1N1B4_2263at 2579.955 kb on - strand, within Pf1N1B4_2263at 2579.955 kb on - strandat 2580.612 kb on + strandat 2580.613 kb on - strandat 2580.613 kb on - strandat 2580.628 kb on + strandat 2580.628 kb on + strandat 2580.628 kb on + strandat 2580.629 kb on - strandat 2580.629 kb on - strandat 2580.709 kb on + strandat 2580.709 kb on + strandat 2580.710 kb on - strandat 2580.710 kb on - strandat 2580.710 kb on - strandat 2580.712 kb on + strandat 2580.712 kb on + strandat 2580.713 kb on - strandat 2580.713 kb on - strandat 2580.713 kb on - strandat 2580.725 kb on + strandat 2580.727 kb on + strandat 2580.727 kb on + strandat 2580.727 kb on + strandat 2580.727 kb on + strandat 2580.727 kb on + strandat 2580.727 kb on + strandat 2580.728 kb on - strandat 2580.728 kb on - strandat 2580.728 kb on - strandat 2580.728 kb on - strandat 2580.748 kb on + strandat 2580.748 kb on + strandat 2580.748 kb on + strandat 2580.749 kb on - strandat 2580.847 kb on + strandat 2580.847 kb on + strandat 2580.847 kb on + strandat 2580.848 kb on - strandat 2580.848 kb on - strandat 2580.848 kb on - strandat 2580.848 kb on - strandat 2580.848 kb on - strandat 2580.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,578,552 + +1.1
2,578,552 + -1.7
2,578,552 + -1.9
2,578,552 + +0.7
2,578,552 + +0.0
2,578,552 + +1.0
2,578,552 + +0.7
2,578,552 + +1.0
2,578,552 + -0.6
2,578,553 - +0.5
2,578,553 - +0.1
2,578,553 - -0.6
2,578,553 - +0.7
2,578,553 - +0.4
2,578,573 - -1.0
2,578,583 + +1.3
2,578,583 + -1.5
2,578,583 + +0.1
2,578,583 + -0.7
2,578,584 - -1.1
2,578,584 - +1.4
2,578,584 - -0.7
2,578,630 + -2.4
2,578,630 + +0.1
2,578,630 + +0.9
2,578,630 + +0.4
2,578,756 - Pf1N1B4_2262 0.18 +0.4
2,578,767 + Pf1N1B4_2262 0.19 +0.0
2,578,767 + Pf1N1B4_2262 0.19 -1.7
2,578,767 + Pf1N1B4_2262 0.19 +2.1
2,578,767 + Pf1N1B4_2262 0.19 -0.2
2,578,767 + Pf1N1B4_2262 0.19 -0.7
2,578,767 + Pf1N1B4_2262 0.19 -0.5
2,578,767 + Pf1N1B4_2262 0.19 +0.1
2,578,767 + Pf1N1B4_2262 0.19 +0.7
2,578,768 - Pf1N1B4_2262 0.19 +0.1
2,578,768 - Pf1N1B4_2262 0.19 +0.1
2,578,768 - Pf1N1B4_2262 0.19 +0.5
2,578,768 - Pf1N1B4_2262 0.19 +0.6
2,578,768 - Pf1N1B4_2262 0.19 +0.5
2,578,803 - Pf1N1B4_2262 0.23 -0.0
2,578,803 - Pf1N1B4_2262 0.23 +1.1
2,578,815 + +0.7
2,578,815 + Pf1N1B4_2262 0.24 +0.3
2,578,815 + Pf1N1B4_2262 0.24 -3.0
2,578,815 + Pf1N1B4_2262 0.24 +0.2
2,578,815 + Pf1N1B4_2262 0.24 -0.7
2,578,815 + Pf1N1B4_2262 0.24 +0.7
2,578,815 + Pf1N1B4_2262 0.24 -0.7
2,578,816 - Pf1N1B4_2262 0.24 -0.2
2,578,842 + Pf1N1B4_2262 0.27 +1.4
2,578,842 + Pf1N1B4_2262 0.27 -0.8
2,578,842 + Pf1N1B4_2262 0.27 -2.1
2,578,842 + Pf1N1B4_2262 0.27 -0.2
2,578,842 + Pf1N1B4_2262 0.27 +0.1
2,578,842 + Pf1N1B4_2262 0.27 +1.5
2,578,842 + Pf1N1B4_2262 0.27 -0.6
2,578,842 + Pf1N1B4_2262 0.27 +0.3
2,578,843 - Pf1N1B4_2262 0.27 -0.7
2,578,843 - Pf1N1B4_2262 0.27 -0.1
2,578,843 - Pf1N1B4_2262 0.27 -1.5
2,578,843 - Pf1N1B4_2262 0.27 +1.5
2,578,843 - Pf1N1B4_2262 0.27 +0.1
2,578,843 - Pf1N1B4_2262 0.27 -0.6
2,578,854 + Pf1N1B4_2262 0.28 -0.6
2,578,855 - Pf1N1B4_2262 0.28 -0.1
2,578,924 - Pf1N1B4_2262 0.36 +1.7
2,579,013 + Pf1N1B4_2262 0.46 -0.0
2,579,014 - Pf1N1B4_2262 0.46 +1.2
2,579,014 - Pf1N1B4_2262 0.46 -0.4
2,579,014 - Pf1N1B4_2262 0.46 -0.5
2,579,121 + Pf1N1B4_2262 0.57 -1.5
2,579,122 - Pf1N1B4_2262 0.57 -0.0
2,579,122 - Pf1N1B4_2262 0.57 -0.4
2,579,122 - Pf1N1B4_2262 0.57 +0.7
2,579,136 + Pf1N1B4_2262 0.59 -0.5
2,579,136 + Pf1N1B4_2262 0.59 +1.0
2,579,137 - Pf1N1B4_2262 0.59 -0.1
2,579,137 - Pf1N1B4_2262 0.59 +0.0
2,579,137 - Pf1N1B4_2262 0.59 -0.7
2,579,142 + Pf1N1B4_2262 0.60 -0.2
2,579,142 + Pf1N1B4_2262 0.60 +1.4
2,579,142 + Pf1N1B4_2262 0.60 -0.5
2,579,143 - Pf1N1B4_2262 0.60 -0.1
2,579,143 - Pf1N1B4_2262 0.60 -0.7
2,579,480 + -2.0
2,579,481 - -0.5
2,579,481 - +0.3
2,579,564 + -0.3
2,579,564 + -1.5
2,579,564 + +0.7
2,579,564 + +0.1
2,579,564 + +0.7
2,579,591 + -1.0
2,579,592 - -0.1
2,579,592 - -0.6
2,579,592 - +0.8
2,579,648 + Pf1N1B4_2263 0.15 -0.0
2,579,648 + Pf1N1B4_2263 0.15 -0.5
2,579,648 + Pf1N1B4_2263 0.15 -0.7
2,579,649 - Pf1N1B4_2263 0.16 +1.5
2,579,714 + Pf1N1B4_2263 0.23 +0.3
2,579,770 + Pf1N1B4_2263 0.29 -1.0
2,579,954 + Pf1N1B4_2263 0.50 +0.9
2,579,955 - Pf1N1B4_2263 0.50 -0.4
2,579,955 - Pf1N1B4_2263 0.50 -0.6
2,579,955 - Pf1N1B4_2263 0.50 -0.0
2,579,955 - Pf1N1B4_2263 0.50 +0.9
2,579,955 - +0.1
2,580,612 + -2.3
2,580,613 - +0.3
2,580,613 - +0.1
2,580,628 + +0.5
2,580,628 + -0.6
2,580,628 + -0.9
2,580,629 - +0.6
2,580,629 - -0.9
2,580,709 + -0.6
2,580,709 + +0.7
2,580,710 - +0.0
2,580,710 - -0.1
2,580,710 - -0.5
2,580,712 + +0.2
2,580,712 + -0.0
2,580,713 - -0.6
2,580,713 - -1.0
2,580,713 - -0.3
2,580,725 + -1.3
2,580,727 + -1.5
2,580,727 + +0.0
2,580,727 + -1.1
2,580,727 + -0.1
2,580,727 + -0.3
2,580,727 + -0.9
2,580,728 - +0.1
2,580,728 - +1.3
2,580,728 - -0.9
2,580,728 - +1.1
2,580,748 + +1.7
2,580,748 + +0.1
2,580,748 + +0.2
2,580,749 - +0.7
2,580,847 + +1.7
2,580,847 + -1.5
2,580,847 + -0.3
2,580,848 - -0.3
2,580,848 - +0.1
2,580,848 - +0.3
2,580,848 - -0.4
2,580,848 - -1.1
2,580,848 - -0.6

Or see this region's nucleotide sequence