Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2147

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2146 and Pf1N1B4_2147 are separated by 129 nucleotidesPf1N1B4_2147 and Pf1N1B4_2148 are separated by 317 nucleotidesPf1N1B4_2148 and Pf1N1B4_2149 are separated by 133 nucleotides Pf1N1B4_2146 - Alanine racemase (EC 5.1.1.1), at 2,456,266 to 2,457,339 _2146 Pf1N1B4_2147 - Putrescine utilization regulator, at 2,457,469 to 2,458,017 _2147 Pf1N1B4_2148 - Cytochrome c5, at 2,458,335 to 2,458,613 _2148 Pf1N1B4_2149 - Acetyl-CoA hydrolase, at 2,458,747 to 2,460,669 _2149 Position (kb) 2457 2458 2459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2457.325 kb on + strandat 2457.326 kb on - strandat 2457.326 kb on - strandat 2457.326 kb on - strandat 2457.398 kb on + strandat 2457.398 kb on + strandat 2457.398 kb on + strandat 2457.398 kb on + strandat 2457.399 kb on - strandat 2457.402 kb on + strandat 2457.402 kb on + strandat 2457.402 kb on + strandat 2457.403 kb on - strandat 2457.403 kb on - strandat 2457.403 kb on - strandat 2457.433 kb on + strandat 2457.434 kb on - strandat 2457.434 kb on - strandat 2457.434 kb on - strandat 2457.550 kb on - strand, within Pf1N1B4_2147at 2457.694 kb on + strand, within Pf1N1B4_2147at 2457.694 kb on + strand, within Pf1N1B4_2147at 2457.695 kb on - strand, within Pf1N1B4_2147at 2457.796 kb on + strand, within Pf1N1B4_2147at 2457.925 kb on + strand, within Pf1N1B4_2147at 2457.925 kb on + strand, within Pf1N1B4_2147at 2457.925 kb on + strandat 2457.925 kb on + strand, within Pf1N1B4_2147at 2457.925 kb on + strand, within Pf1N1B4_2147at 2457.925 kb on + strandat 2457.925 kb on + strand, within Pf1N1B4_2147at 2457.925 kb on + strand, within Pf1N1B4_2147at 2457.926 kb on - strand, within Pf1N1B4_2147at 2457.926 kb on - strand, within Pf1N1B4_2147at 2457.928 kb on + strand, within Pf1N1B4_2147at 2457.928 kb on + strand, within Pf1N1B4_2147at 2457.928 kb on + strand, within Pf1N1B4_2147at 2457.928 kb on + strand, within Pf1N1B4_2147at 2457.928 kb on + strand, within Pf1N1B4_2147at 2457.928 kb on + strandat 2457.929 kb on - strand, within Pf1N1B4_2147at 2457.929 kb on - strand, within Pf1N1B4_2147at 2458.016 kb on - strandat 2458.060 kb on + strandat 2458.060 kb on + strandat 2458.061 kb on - strandat 2458.061 kb on - strandat 2458.061 kb on - strandat 2458.061 kb on - strandat 2458.061 kb on - strandat 2458.061 kb on - strandat 2458.061 kb on - strandat 2458.119 kb on - strandat 2458.124 kb on + strandat 2458.125 kb on - strandat 2458.125 kb on - strandat 2458.125 kb on - strandat 2458.126 kb on + strandat 2458.126 kb on + strandat 2458.126 kb on + strandat 2458.126 kb on + strandat 2458.126 kb on + strandat 2458.126 kb on + strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.127 kb on - strandat 2458.166 kb on - strandat 2458.183 kb on + strandat 2458.183 kb on + strandat 2458.183 kb on + strandat 2458.183 kb on + strandat 2458.183 kb on + strandat 2458.183 kb on + strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.184 kb on - strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.195 kb on + strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.196 kb on - strandat 2458.199 kb on + strandat 2458.199 kb on + strandat 2458.199 kb on + strandat 2458.199 kb on + strandat 2458.199 kb on + strandat 2458.199 kb on + strandat 2458.200 kb on - strandat 2458.200 kb on - strandat 2458.200 kb on - strandat 2458.200 kb on - strandat 2458.200 kb on - strandat 2458.228 kb on + strandat 2458.229 kb on - strandat 2458.274 kb on + strandat 2458.274 kb on + strandat 2458.275 kb on - strandat 2458.280 kb on + strandat 2458.281 kb on - strandat 2458.281 kb on - strandat 2458.281 kb on - strandat 2458.281 kb on - strandat 2458.281 kb on - strandat 2458.611 kb on + strandat 2458.611 kb on + strandat 2458.612 kb on - strandat 2458.612 kb on - strandat 2458.612 kb on - strandat 2458.764 kb on + strandat 2458.765 kb on - strandat 2458.765 kb on - strandat 2458.868 kb on - strandat 2458.909 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,457,325 + -1.3
2,457,326 - +0.2
2,457,326 - +0.2
2,457,326 - +1.0
2,457,398 + +1.3
2,457,398 + +2.7
2,457,398 + +0.9
2,457,398 + +0.4
2,457,399 - -0.7
2,457,402 + +1.2
2,457,402 + -0.3
2,457,402 + -0.6
2,457,403 - -0.7
2,457,403 - +1.7
2,457,403 - -0.1
2,457,433 + +2.3
2,457,434 - -1.6
2,457,434 - -1.3
2,457,434 - +0.3
2,457,550 - Pf1N1B4_2147 0.15 -0.3
2,457,694 + Pf1N1B4_2147 0.41 -0.3
2,457,694 + Pf1N1B4_2147 0.41 -1.3
2,457,695 - Pf1N1B4_2147 0.41 -1.3
2,457,796 + Pf1N1B4_2147 0.60 +0.7
2,457,925 + Pf1N1B4_2147 0.83 +0.7
2,457,925 + Pf1N1B4_2147 0.83 -1.4
2,457,925 + -0.3
2,457,925 + Pf1N1B4_2147 0.83 -0.4
2,457,925 + Pf1N1B4_2147 0.83 -1.6
2,457,925 + +0.7
2,457,925 + Pf1N1B4_2147 0.83 -0.8
2,457,925 + Pf1N1B4_2147 0.83 -1.7
2,457,926 - Pf1N1B4_2147 0.83 -0.8
2,457,926 - Pf1N1B4_2147 0.83 -1.2
2,457,928 + Pf1N1B4_2147 0.84 +0.9
2,457,928 + Pf1N1B4_2147 0.84 +1.2
2,457,928 + Pf1N1B4_2147 0.84 -0.2
2,457,928 + Pf1N1B4_2147 0.84 +1.7
2,457,928 + Pf1N1B4_2147 0.84 -0.8
2,457,928 + +2.5
2,457,929 - Pf1N1B4_2147 0.84 -0.3
2,457,929 - Pf1N1B4_2147 0.84 -0.3
2,458,016 - -1.5
2,458,060 + -0.3
2,458,060 + -1.0
2,458,061 - -0.6
2,458,061 - +0.7
2,458,061 - +0.2
2,458,061 - +1.6
2,458,061 - +1.2
2,458,061 - -0.3
2,458,061 - +0.5
2,458,119 - +0.0
2,458,124 + -0.8
2,458,125 - -0.0
2,458,125 - +1.0
2,458,125 - -0.5
2,458,126 + -0.5
2,458,126 + -1.4
2,458,126 + +0.7
2,458,126 + -0.1
2,458,126 + -0.4
2,458,126 + +0.2
2,458,127 - +0.2
2,458,127 - -0.2
2,458,127 - +1.2
2,458,127 - -0.1
2,458,127 - -0.6
2,458,127 - -0.6
2,458,127 - -1.0
2,458,127 - -0.2
2,458,127 - -0.8
2,458,127 - -0.6
2,458,127 - -1.3
2,458,127 - +0.2
2,458,127 - +0.5
2,458,127 - -0.0
2,458,127 - -1.3
2,458,127 - -1.4
2,458,127 - +0.4
2,458,127 - +0.7
2,458,127 - +1.7
2,458,127 - +0.2
2,458,127 - -3.0
2,458,127 - -1.2
2,458,127 - +1.4
2,458,127 - -0.9
2,458,127 - +0.6
2,458,127 - +0.2
2,458,127 - -1.7
2,458,127 - +1.1
2,458,127 - +1.1
2,458,127 - -0.5
2,458,127 - +1.7
2,458,166 - -0.3
2,458,183 + +0.6
2,458,183 + +0.7
2,458,183 + +0.5
2,458,183 + +0.2
2,458,183 + -0.8
2,458,183 + -0.4
2,458,184 - +1.2
2,458,184 - -1.8
2,458,184 - -0.1
2,458,184 - -0.8
2,458,184 - -0.3
2,458,184 - +1.1
2,458,184 - +0.3
2,458,184 - +1.3
2,458,184 - +0.7
2,458,184 - -0.4
2,458,195 + -1.3
2,458,195 + -0.1
2,458,195 + -1.4
2,458,195 + -0.3
2,458,195 + +0.2
2,458,195 + -0.8
2,458,195 + +0.3
2,458,195 + -2.2
2,458,195 + +0.3
2,458,195 + +0.5
2,458,195 + +0.4
2,458,195 + -0.5
2,458,195 + -1.7
2,458,195 + +2.7
2,458,195 + -1.3
2,458,195 + -2.2
2,458,195 + -0.3
2,458,195 + -0.8
2,458,195 + -0.8
2,458,195 + +0.5
2,458,195 + -0.1
2,458,195 + +0.2
2,458,195 + -0.3
2,458,195 + -0.6
2,458,195 + -0.3
2,458,195 + -0.3
2,458,195 + -0.3
2,458,195 + -0.5
2,458,195 + +0.3
2,458,195 + -0.4
2,458,195 + +1.4
2,458,195 + -0.8
2,458,195 + +0.4
2,458,195 + -0.3
2,458,195 + +0.3
2,458,196 - -0.6
2,458,196 - -0.8
2,458,196 - -0.7
2,458,196 - +1.7
2,458,196 - -0.4
2,458,196 - +0.5
2,458,196 - -0.1
2,458,196 - -0.6
2,458,196 - -0.2
2,458,196 - -0.3
2,458,196 - -0.3
2,458,196 - +1.2
2,458,196 - -1.1
2,458,196 - -0.3
2,458,196 - +0.2
2,458,196 - -2.1
2,458,196 - -1.3
2,458,196 - +0.0
2,458,196 - +1.1
2,458,196 - +0.7
2,458,196 - -0.2
2,458,196 - -0.1
2,458,196 - +0.3
2,458,196 - +0.2
2,458,196 - -0.9
2,458,196 - +0.4
2,458,196 - -1.0
2,458,196 - +0.7
2,458,196 - +0.4
2,458,199 + +0.7
2,458,199 + -0.1
2,458,199 + +0.7
2,458,199 + +0.9
2,458,199 + +1.1
2,458,199 + -1.1
2,458,200 - -0.8
2,458,200 - +1.2
2,458,200 - +0.1
2,458,200 - -3.2
2,458,200 - -0.4
2,458,228 + -0.3
2,458,229 - +0.7
2,458,274 + -2.3
2,458,274 + +0.2
2,458,275 - +0.2
2,458,280 + +0.2
2,458,281 - -0.3
2,458,281 - -0.4
2,458,281 - -0.4
2,458,281 - -0.3
2,458,281 - +0.6
2,458,611 + -1.4
2,458,611 + +0.5
2,458,612 - +0.9
2,458,612 - +0.5
2,458,612 - +0.3
2,458,764 + +0.2
2,458,765 - +0.2
2,458,765 - +0.9
2,458,868 - -0.4
2,458,909 + +0.2

Or see this region's nucleotide sequence