Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2146 and Pf1N1B4_2147 are separated by 129 nucleotides Pf1N1B4_2147 and Pf1N1B4_2148 are separated by 317 nucleotides Pf1N1B4_2148 and Pf1N1B4_2149 are separated by 133 nucleotides
Pf1N1B4_2146 - Alanine racemase (EC 5.1.1.1), at 2,456,266 to 2,457,339
_2146
Pf1N1B4_2147 - Putrescine utilization regulator, at 2,457,469 to 2,458,017
_2147
Pf1N1B4_2148 - Cytochrome c5, at 2,458,335 to 2,458,613
_2148
Pf1N1B4_2149 - Acetyl-CoA hydrolase, at 2,458,747 to 2,460,669
_2149
Position (kb)
2457
2458
2459 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2457.325 kb on + strand at 2457.326 kb on - strand at 2457.326 kb on - strand at 2457.326 kb on - strand at 2457.398 kb on + strand at 2457.398 kb on + strand at 2457.398 kb on + strand at 2457.398 kb on + strand at 2457.399 kb on - strand at 2457.402 kb on + strand at 2457.402 kb on + strand at 2457.402 kb on + strand at 2457.403 kb on - strand at 2457.403 kb on - strand at 2457.403 kb on - strand at 2457.433 kb on + strand at 2457.434 kb on - strand at 2457.434 kb on - strand at 2457.434 kb on - strand at 2457.550 kb on - strand, within Pf1N1B4_2147 at 2457.694 kb on + strand, within Pf1N1B4_2147 at 2457.694 kb on + strand, within Pf1N1B4_2147 at 2457.695 kb on - strand, within Pf1N1B4_2147 at 2457.796 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.926 kb on - strand, within Pf1N1B4_2147 at 2457.926 kb on - strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand at 2457.929 kb on - strand, within Pf1N1B4_2147 at 2457.929 kb on - strand, within Pf1N1B4_2147 at 2458.016 kb on - strand at 2458.060 kb on + strand at 2458.060 kb on + strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.119 kb on - strand at 2458.124 kb on + strand at 2458.125 kb on - strand at 2458.125 kb on - strand at 2458.125 kb on - strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.166 kb on - strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.200 kb on - strand at 2458.200 kb on - strand at 2458.200 kb on - strand at 2458.200 kb on - strand at 2458.200 kb on - strand at 2458.228 kb on + strand at 2458.229 kb on - strand at 2458.274 kb on + strand at 2458.274 kb on + strand at 2458.275 kb on - strand at 2458.280 kb on + strand at 2458.281 kb on - strand at 2458.281 kb on - strand at 2458.281 kb on - strand at 2458.281 kb on - strand at 2458.281 kb on - strand at 2458.611 kb on + strand at 2458.611 kb on + strand at 2458.612 kb on - strand at 2458.612 kb on - strand at 2458.612 kb on - strand at 2458.764 kb on + strand at 2458.765 kb on - strand at 2458.765 kb on - strand at 2458.868 kb on - strand at 2458.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,457,325 + -1.3 2,457,326 - +0.2 2,457,326 - +0.2 2,457,326 - +1.0 2,457,398 + +1.3 2,457,398 + +2.7 2,457,398 + +0.9 2,457,398 + +0.4 2,457,399 - -0.7 2,457,402 + +1.2 2,457,402 + -0.3 2,457,402 + -0.6 2,457,403 - -0.7 2,457,403 - +1.7 2,457,403 - -0.1 2,457,433 + +2.3 2,457,434 - -1.6 2,457,434 - -1.3 2,457,434 - +0.3 2,457,550 - Pf1N1B4_2147 0.15 -0.3 2,457,694 + Pf1N1B4_2147 0.41 -0.3 2,457,694 + Pf1N1B4_2147 0.41 -1.3 2,457,695 - Pf1N1B4_2147 0.41 -1.3 2,457,796 + Pf1N1B4_2147 0.60 +0.7 2,457,925 + Pf1N1B4_2147 0.83 +0.7 2,457,925 + Pf1N1B4_2147 0.83 -1.4 2,457,925 + -0.3 2,457,925 + Pf1N1B4_2147 0.83 -0.4 2,457,925 + Pf1N1B4_2147 0.83 -1.6 2,457,925 + +0.7 2,457,925 + Pf1N1B4_2147 0.83 -0.8 2,457,925 + Pf1N1B4_2147 0.83 -1.7 2,457,926 - Pf1N1B4_2147 0.83 -0.8 2,457,926 - Pf1N1B4_2147 0.83 -1.2 2,457,928 + Pf1N1B4_2147 0.84 +0.9 2,457,928 + Pf1N1B4_2147 0.84 +1.2 2,457,928 + Pf1N1B4_2147 0.84 -0.2 2,457,928 + Pf1N1B4_2147 0.84 +1.7 2,457,928 + Pf1N1B4_2147 0.84 -0.8 2,457,928 + +2.5 2,457,929 - Pf1N1B4_2147 0.84 -0.3 2,457,929 - Pf1N1B4_2147 0.84 -0.3 2,458,016 - -1.5 2,458,060 + -0.3 2,458,060 + -1.0 2,458,061 - -0.6 2,458,061 - +0.7 2,458,061 - +0.2 2,458,061 - +1.6 2,458,061 - +1.2 2,458,061 - -0.3 2,458,061 - +0.5 2,458,119 - +0.0 2,458,124 + -0.8 2,458,125 - -0.0 2,458,125 - +1.0 2,458,125 - -0.5 2,458,126 + -0.5 2,458,126 + -1.4 2,458,126 + +0.7 2,458,126 + -0.1 2,458,126 + -0.4 2,458,126 + +0.2 2,458,127 - +0.2 2,458,127 - -0.2 2,458,127 - +1.2 2,458,127 - -0.1 2,458,127 - -0.6 2,458,127 - -0.6 2,458,127 - -1.0 2,458,127 - -0.2 2,458,127 - -0.8 2,458,127 - -0.6 2,458,127 - -1.3 2,458,127 - +0.2 2,458,127 - +0.5 2,458,127 - -0.0 2,458,127 - -1.3 2,458,127 - -1.4 2,458,127 - +0.4 2,458,127 - +0.7 2,458,127 - +1.7 2,458,127 - +0.2 2,458,127 - -3.0 2,458,127 - -1.2 2,458,127 - +1.4 2,458,127 - -0.9 2,458,127 - +0.6 2,458,127 - +0.2 2,458,127 - -1.7 2,458,127 - +1.1 2,458,127 - +1.1 2,458,127 - -0.5 2,458,127 - +1.7 2,458,166 - -0.3 2,458,183 + +0.6 2,458,183 + +0.7 2,458,183 + +0.5 2,458,183 + +0.2 2,458,183 + -0.8 2,458,183 + -0.4 2,458,184 - +1.2 2,458,184 - -1.8 2,458,184 - -0.1 2,458,184 - -0.8 2,458,184 - -0.3 2,458,184 - +1.1 2,458,184 - +0.3 2,458,184 - +1.3 2,458,184 - +0.7 2,458,184 - -0.4 2,458,195 + -1.3 2,458,195 + -0.1 2,458,195 + -1.4 2,458,195 + -0.3 2,458,195 + +0.2 2,458,195 + -0.8 2,458,195 + +0.3 2,458,195 + -2.2 2,458,195 + +0.3 2,458,195 + +0.5 2,458,195 + +0.4 2,458,195 + -0.5 2,458,195 + -1.7 2,458,195 + +2.7 2,458,195 + -1.3 2,458,195 + -2.2 2,458,195 + -0.3 2,458,195 + -0.8 2,458,195 + -0.8 2,458,195 + +0.5 2,458,195 + -0.1 2,458,195 + +0.2 2,458,195 + -0.3 2,458,195 + -0.6 2,458,195 + -0.3 2,458,195 + -0.3 2,458,195 + -0.3 2,458,195 + -0.5 2,458,195 + +0.3 2,458,195 + -0.4 2,458,195 + +1.4 2,458,195 + -0.8 2,458,195 + +0.4 2,458,195 + -0.3 2,458,195 + +0.3 2,458,196 - -0.6 2,458,196 - -0.8 2,458,196 - -0.7 2,458,196 - +1.7 2,458,196 - -0.4 2,458,196 - +0.5 2,458,196 - -0.1 2,458,196 - -0.6 2,458,196 - -0.2 2,458,196 - -0.3 2,458,196 - -0.3 2,458,196 - +1.2 2,458,196 - -1.1 2,458,196 - -0.3 2,458,196 - +0.2 2,458,196 - -2.1 2,458,196 - -1.3 2,458,196 - +0.0 2,458,196 - +1.1 2,458,196 - +0.7 2,458,196 - -0.2 2,458,196 - -0.1 2,458,196 - +0.3 2,458,196 - +0.2 2,458,196 - -0.9 2,458,196 - +0.4 2,458,196 - -1.0 2,458,196 - +0.7 2,458,196 - +0.4 2,458,199 + +0.7 2,458,199 + -0.1 2,458,199 + +0.7 2,458,199 + +0.9 2,458,199 + +1.1 2,458,199 + -1.1 2,458,200 - -0.8 2,458,200 - +1.2 2,458,200 - +0.1 2,458,200 - -3.2 2,458,200 - -0.4 2,458,228 + -0.3 2,458,229 - +0.7 2,458,274 + -2.3 2,458,274 + +0.2 2,458,275 - +0.2 2,458,280 + +0.2 2,458,281 - -0.3 2,458,281 - -0.4 2,458,281 - -0.4 2,458,281 - -0.3 2,458,281 - +0.6 2,458,611 + -1.4 2,458,611 + +0.5 2,458,612 - +0.9 2,458,612 - +0.5 2,458,612 - +0.3 2,458,764 + +0.2 2,458,765 - +0.2 2,458,765 - +0.9 2,458,868 - -0.4 2,458,909 + +0.2
Or see this region's nucleotide sequence