Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1256 and Pf1N1B4_1257 are separated by 117 nucleotides
Pf1N1B4_1256 - Transcriptional regulator, LysR family, at 1,437,176 to 1,438,105
_1256
Pf1N1B4_1257 - Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase, at 1,438,223 to 1,439,236
_1257
Position (kb)
1437
1438
1439 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1436.260 kb on + strand at 1436.403 kb on - strand at 1436.434 kb on + strand at 1436.486 kb on + strand at 1436.527 kb on - strand at 1436.603 kb on + strand at 1436.603 kb on + strand at 1436.604 kb on - strand at 1436.604 kb on - strand at 1436.613 kb on + strand at 1436.613 kb on + strand at 1436.614 kb on - strand at 1436.614 kb on - strand at 1436.614 kb on - strand at 1436.614 kb on - strand at 1436.614 kb on - strand at 1436.625 kb on + strand at 1436.626 kb on - strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.758 kb on + strand at 1436.759 kb on - strand at 1436.759 kb on - strand at 1436.759 kb on - strand at 1436.759 kb on - strand at 1436.759 kb on - strand at 1436.760 kb on + strand at 1436.760 kb on + strand at 1436.760 kb on + strand at 1436.760 kb on + strand at 1436.760 kb on + strand at 1436.760 kb on + strand at 1436.760 kb on + strand at 1436.760 kb on + strand at 1436.760 kb on + strand at 1436.761 kb on - strand at 1436.761 kb on - strand at 1436.761 kb on - strand at 1436.795 kb on + strand at 1436.796 kb on - strand at 1436.796 kb on - strand at 1437.013 kb on + strand at 1437.013 kb on + strand at 1437.014 kb on - strand at 1437.014 kb on - strand at 1437.014 kb on - strand at 1437.026 kb on + strand at 1437.027 kb on - strand at 1437.033 kb on + strand at 1437.033 kb on + strand at 1437.034 kb on - strand at 1437.034 kb on - strand at 1437.034 kb on - strand at 1437.034 kb on - strand at 1437.034 kb on - strand at 1437.034 kb on - strand at 1437.034 kb on - strand at 1437.123 kb on + strand at 1437.124 kb on - strand at 1437.124 kb on - strand at 1437.124 kb on - strand at 1437.124 kb on - strand at 1437.124 kb on - strand at 1437.124 kb on - strand at 1437.142 kb on - strand at 1437.142 kb on - strand at 1437.154 kb on + strand at 1437.181 kb on - strand at 1437.216 kb on - strand at 1437.216 kb on - strand at 1437.369 kb on - strand, within Pf1N1B4_1256 at 1437.385 kb on + strand, within Pf1N1B4_1256 at 1437.385 kb on + strand, within Pf1N1B4_1256 at 1437.386 kb on - strand, within Pf1N1B4_1256 at 1437.530 kb on + strand, within Pf1N1B4_1256 at 1437.611 kb on + strand, within Pf1N1B4_1256 at 1437.673 kb on - strand, within Pf1N1B4_1256 at 1437.903 kb on + strand, within Pf1N1B4_1256 at 1438.024 kb on + strand at 1438.024 kb on + strand at 1438.024 kb on + strand at 1438.024 kb on + strand at 1438.025 kb on - strand at 1438.161 kb on + strand at 1438.162 kb on - strand at 1438.162 kb on - strand at 1438.222 kb on + strand at 1438.223 kb on - strand at 1438.223 kb on - strand at 1438.238 kb on + strand at 1438.238 kb on + strand at 1438.238 kb on + strand at 1438.239 kb on - strand at 1438.239 kb on - strand at 1438.239 kb on - strand at 1438.241 kb on + strand at 1438.242 kb on - strand at 1438.242 kb on - strand at 1438.487 kb on + strand, within Pf1N1B4_1257 at 1438.558 kb on + strand at 1438.558 kb on + strand, within Pf1N1B4_1257 at 1439.033 kb on + strand, within Pf1N1B4_1257 at 1439.033 kb on + strand, within Pf1N1B4_1257 at 1439.034 kb on - strand, within Pf1N1B4_1257 at 1439.034 kb on - strand, within Pf1N1B4_1257 at 1439.034 kb on - strand, within Pf1N1B4_1257 at 1439.034 kb on - strand, within Pf1N1B4_1257 at 1439.034 kb on - strand, within Pf1N1B4_1257 at 1439.034 kb on - strand, within Pf1N1B4_1257 at 1439.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,436,260 + +0.2 1,436,403 - -1.2 1,436,434 + +0.4 1,436,486 + +0.5 1,436,527 - +0.3 1,436,603 + -0.1 1,436,603 + -0.1 1,436,604 - -0.1 1,436,604 - -0.3 1,436,613 + -0.7 1,436,613 + +0.2 1,436,614 - +1.5 1,436,614 - +1.2 1,436,614 - +1.2 1,436,614 - +0.9 1,436,614 - -1.7 1,436,625 + +0.8 1,436,626 - +0.0 1,436,758 + -0.5 1,436,758 + +1.5 1,436,758 + +0.8 1,436,758 + -0.1 1,436,758 + +1.5 1,436,758 + -1.8 1,436,758 + +0.2 1,436,758 + +0.7 1,436,758 + +2.5 1,436,758 + +0.5 1,436,758 + -1.1 1,436,758 + -0.3 1,436,759 - +0.7 1,436,759 - -0.8 1,436,759 - -2.7 1,436,759 - +1.3 1,436,759 - -0.1 1,436,760 + -1.1 1,436,760 + +0.3 1,436,760 + -0.5 1,436,760 + +0.3 1,436,760 + -0.3 1,436,760 + +0.7 1,436,760 + -0.3 1,436,760 + -0.5 1,436,760 + -0.2 1,436,761 - +0.7 1,436,761 - +0.9 1,436,761 - +0.1 1,436,795 + -0.3 1,436,796 - -0.5 1,436,796 - -0.0 1,437,013 + +0.4 1,437,013 + +0.2 1,437,014 - -1.5 1,437,014 - +0.5 1,437,014 - +0.2 1,437,026 + +1.5 1,437,027 - -0.7 1,437,033 + -0.7 1,437,033 + +0.9 1,437,034 - -0.5 1,437,034 - +1.1 1,437,034 - +0.1 1,437,034 - +0.2 1,437,034 - -1.0 1,437,034 - +0.9 1,437,034 - -1.0 1,437,123 + -0.1 1,437,124 - -1.4 1,437,124 - -0.5 1,437,124 - -3.3 1,437,124 - +0.2 1,437,124 - -0.2 1,437,124 - -0.6 1,437,142 - -1.5 1,437,142 - +0.3 1,437,154 + +0.3 1,437,181 - -0.2 1,437,216 - -0.5 1,437,216 - +0.9 1,437,369 - Pf1N1B4_1256 0.21 -0.2 1,437,385 + Pf1N1B4_1256 0.22 +1.5 1,437,385 + Pf1N1B4_1256 0.22 -0.9 1,437,386 - Pf1N1B4_1256 0.23 -2.7 1,437,530 + Pf1N1B4_1256 0.38 -0.1 1,437,611 + Pf1N1B4_1256 0.47 +0.8 1,437,673 - Pf1N1B4_1256 0.53 -0.8 1,437,903 + Pf1N1B4_1256 0.78 -1.8 1,438,024 + -1.2 1,438,024 + -0.1 1,438,024 + +0.4 1,438,024 + -0.3 1,438,025 - -0.3 1,438,161 + -1.1 1,438,162 - +0.3 1,438,162 - +1.3 1,438,222 + +2.5 1,438,223 - -0.7 1,438,223 - -1.0 1,438,238 + -0.2 1,438,238 + +0.4 1,438,238 + -0.8 1,438,239 - -1.0 1,438,239 - +0.5 1,438,239 - -0.8 1,438,241 + +0.1 1,438,242 - +0.1 1,438,242 - +1.5 1,438,487 + Pf1N1B4_1257 0.26 +1.1 1,438,558 + +0.8 1,438,558 + Pf1N1B4_1257 0.33 -2.0 1,439,033 + Pf1N1B4_1257 0.80 +0.6 1,439,033 + Pf1N1B4_1257 0.80 +0.4 1,439,034 - Pf1N1B4_1257 0.80 -0.2 1,439,034 - Pf1N1B4_1257 0.80 +0.0 1,439,034 - Pf1N1B4_1257 0.80 -0.8 1,439,034 - Pf1N1B4_1257 0.80 -0.3 1,439,034 - Pf1N1B4_1257 0.80 -0.6 1,439,034 - Pf1N1B4_1257 0.80 +0.4 1,439,034 - -0.8
Or see this region's nucleotide sequence