Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1256

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1256 and Pf1N1B4_1257 are separated by 117 nucleotides Pf1N1B4_1256 - Transcriptional regulator, LysR family, at 1,437,176 to 1,438,105 _1256 Pf1N1B4_1257 - Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase, at 1,438,223 to 1,439,236 _1257 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1436.260 kb on + strandat 1436.403 kb on - strandat 1436.434 kb on + strandat 1436.486 kb on + strandat 1436.527 kb on - strandat 1436.603 kb on + strandat 1436.603 kb on + strandat 1436.604 kb on - strandat 1436.604 kb on - strandat 1436.613 kb on + strandat 1436.613 kb on + strandat 1436.614 kb on - strandat 1436.614 kb on - strandat 1436.614 kb on - strandat 1436.614 kb on - strandat 1436.614 kb on - strandat 1436.625 kb on + strandat 1436.626 kb on - strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.758 kb on + strandat 1436.759 kb on - strandat 1436.759 kb on - strandat 1436.759 kb on - strandat 1436.759 kb on - strandat 1436.759 kb on - strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.761 kb on - strandat 1436.761 kb on - strandat 1436.761 kb on - strandat 1436.795 kb on + strandat 1436.796 kb on - strandat 1436.796 kb on - strandat 1437.013 kb on + strandat 1437.013 kb on + strandat 1437.014 kb on - strandat 1437.014 kb on - strandat 1437.014 kb on - strandat 1437.026 kb on + strandat 1437.027 kb on - strandat 1437.033 kb on + strandat 1437.033 kb on + strandat 1437.034 kb on - strandat 1437.034 kb on - strandat 1437.034 kb on - strandat 1437.034 kb on - strandat 1437.034 kb on - strandat 1437.034 kb on - strandat 1437.034 kb on - strandat 1437.123 kb on + strandat 1437.124 kb on - strandat 1437.124 kb on - strandat 1437.124 kb on - strandat 1437.124 kb on - strandat 1437.124 kb on - strandat 1437.124 kb on - strandat 1437.142 kb on - strandat 1437.142 kb on - strandat 1437.154 kb on + strandat 1437.181 kb on - strandat 1437.216 kb on - strandat 1437.216 kb on - strandat 1437.369 kb on - strand, within Pf1N1B4_1256at 1437.385 kb on + strand, within Pf1N1B4_1256at 1437.385 kb on + strand, within Pf1N1B4_1256at 1437.386 kb on - strand, within Pf1N1B4_1256at 1437.530 kb on + strand, within Pf1N1B4_1256at 1437.611 kb on + strand, within Pf1N1B4_1256at 1437.673 kb on - strand, within Pf1N1B4_1256at 1437.903 kb on + strand, within Pf1N1B4_1256at 1438.024 kb on + strandat 1438.024 kb on + strandat 1438.024 kb on + strandat 1438.024 kb on + strandat 1438.025 kb on - strandat 1438.161 kb on + strandat 1438.162 kb on - strandat 1438.162 kb on - strandat 1438.222 kb on + strandat 1438.223 kb on - strandat 1438.223 kb on - strandat 1438.238 kb on + strandat 1438.238 kb on + strandat 1438.238 kb on + strandat 1438.239 kb on - strandat 1438.239 kb on - strandat 1438.239 kb on - strandat 1438.241 kb on + strandat 1438.242 kb on - strandat 1438.242 kb on - strandat 1438.487 kb on + strand, within Pf1N1B4_1257at 1438.558 kb on + strandat 1438.558 kb on + strand, within Pf1N1B4_1257at 1439.033 kb on + strand, within Pf1N1B4_1257at 1439.033 kb on + strand, within Pf1N1B4_1257at 1439.034 kb on - strand, within Pf1N1B4_1257at 1439.034 kb on - strand, within Pf1N1B4_1257at 1439.034 kb on - strand, within Pf1N1B4_1257at 1439.034 kb on - strand, within Pf1N1B4_1257at 1439.034 kb on - strand, within Pf1N1B4_1257at 1439.034 kb on - strand, within Pf1N1B4_1257at 1439.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,436,260 + +0.2
1,436,403 - -1.2
1,436,434 + +0.4
1,436,486 + +0.5
1,436,527 - +0.3
1,436,603 + -0.1
1,436,603 + -0.1
1,436,604 - -0.1
1,436,604 - -0.3
1,436,613 + -0.7
1,436,613 + +0.2
1,436,614 - +1.5
1,436,614 - +1.2
1,436,614 - +1.2
1,436,614 - +0.9
1,436,614 - -1.7
1,436,625 + +0.8
1,436,626 - +0.0
1,436,758 + -0.5
1,436,758 + +1.5
1,436,758 + +0.8
1,436,758 + -0.1
1,436,758 + +1.5
1,436,758 + -1.8
1,436,758 + +0.2
1,436,758 + +0.7
1,436,758 + +2.5
1,436,758 + +0.5
1,436,758 + -1.1
1,436,758 + -0.3
1,436,759 - +0.7
1,436,759 - -0.8
1,436,759 - -2.7
1,436,759 - +1.3
1,436,759 - -0.1
1,436,760 + -1.1
1,436,760 + +0.3
1,436,760 + -0.5
1,436,760 + +0.3
1,436,760 + -0.3
1,436,760 + +0.7
1,436,760 + -0.3
1,436,760 + -0.5
1,436,760 + -0.2
1,436,761 - +0.7
1,436,761 - +0.9
1,436,761 - +0.1
1,436,795 + -0.3
1,436,796 - -0.5
1,436,796 - -0.0
1,437,013 + +0.4
1,437,013 + +0.2
1,437,014 - -1.5
1,437,014 - +0.5
1,437,014 - +0.2
1,437,026 + +1.5
1,437,027 - -0.7
1,437,033 + -0.7
1,437,033 + +0.9
1,437,034 - -0.5
1,437,034 - +1.1
1,437,034 - +0.1
1,437,034 - +0.2
1,437,034 - -1.0
1,437,034 - +0.9
1,437,034 - -1.0
1,437,123 + -0.1
1,437,124 - -1.4
1,437,124 - -0.5
1,437,124 - -3.3
1,437,124 - +0.2
1,437,124 - -0.2
1,437,124 - -0.6
1,437,142 - -1.5
1,437,142 - +0.3
1,437,154 + +0.3
1,437,181 - -0.2
1,437,216 - -0.5
1,437,216 - +0.9
1,437,369 - Pf1N1B4_1256 0.21 -0.2
1,437,385 + Pf1N1B4_1256 0.22 +1.5
1,437,385 + Pf1N1B4_1256 0.22 -0.9
1,437,386 - Pf1N1B4_1256 0.23 -2.7
1,437,530 + Pf1N1B4_1256 0.38 -0.1
1,437,611 + Pf1N1B4_1256 0.47 +0.8
1,437,673 - Pf1N1B4_1256 0.53 -0.8
1,437,903 + Pf1N1B4_1256 0.78 -1.8
1,438,024 + -1.2
1,438,024 + -0.1
1,438,024 + +0.4
1,438,024 + -0.3
1,438,025 - -0.3
1,438,161 + -1.1
1,438,162 - +0.3
1,438,162 - +1.3
1,438,222 + +2.5
1,438,223 - -0.7
1,438,223 - -1.0
1,438,238 + -0.2
1,438,238 + +0.4
1,438,238 + -0.8
1,438,239 - -1.0
1,438,239 - +0.5
1,438,239 - -0.8
1,438,241 + +0.1
1,438,242 - +0.1
1,438,242 - +1.5
1,438,487 + Pf1N1B4_1257 0.26 +1.1
1,438,558 + +0.8
1,438,558 + Pf1N1B4_1257 0.33 -2.0
1,439,033 + Pf1N1B4_1257 0.80 +0.6
1,439,033 + Pf1N1B4_1257 0.80 +0.4
1,439,034 - Pf1N1B4_1257 0.80 -0.2
1,439,034 - Pf1N1B4_1257 0.80 +0.0
1,439,034 - Pf1N1B4_1257 0.80 -0.8
1,439,034 - Pf1N1B4_1257 0.80 -0.3
1,439,034 - Pf1N1B4_1257 0.80 -0.6
1,439,034 - Pf1N1B4_1257 0.80 +0.4
1,439,034 - -0.8

Or see this region's nucleotide sequence