Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16015

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,524,556	+		LRK54_RS16010	0.56	+0.1
3,524,556	+		LRK54_RS16010	0.56	+1.9
3,524,556	+		LRK54_RS16010	0.56	+0.8
3,524,556	+		LRK54_RS16010	0.56	-0.5
3,524,556	+		LRK54_RS16010	0.56	+0.4
3,524,556	+		LRK54_RS16010	0.56	+0.9
3,524,557	-		LRK54_RS16010	0.56	+0.6
3,524,557	-		LRK54_RS16010	0.56	+0.0
3,524,557	-		LRK54_RS16010	0.56	-0.1
3,524,578	-		LRK54_RS16010	0.58	-0.7
3,524,676	+		LRK54_RS16010	0.67	-1.4
3,524,677	-		LRK54_RS16010	0.67	+0.1
3,524,677	-		LRK54_RS16010	0.67	-0.1
3,524,916	+		LRK54_RS16010	0.88	-0.2
3,524,917	-		LRK54_RS16010	0.88	+1.5
3,524,917	-		LRK54_RS16010	0.88	-0.9
3,524,917	-		LRK54_RS16010	0.88	-0.0
3,524,917	-		LRK54_RS16010	0.88	-1.7
3,524,917	-		LRK54_RS16010	0.88	+2.1
3,525,050	+				+0.5
3,525,050	+				+0.2
3,525,050	+				-0.6
3,525,051	-				+0.0
3,525,051	-				+0.7
3,525,051	-				+0.2
3,525,100	+				+0.0
3,525,100	+				+0.6
3,525,100	+				+0.0
3,525,100	+				+1.2
3,525,100	+				+0.3
3,525,100	+				-0.8
3,525,100	+				+0.3
3,525,100	+				+0.4
3,525,100	+				-0.9
3,525,101	-				-2.4
3,525,101	-				+0.2
3,525,101	-				+1.2
3,525,101	-				+0.4
3,525,120	-				-1.7
3,525,228	+				-1.6
3,525,228	+				-2.8
3,525,228	+				-1.6
3,525,228	+				-0.2
3,525,228	+				-1.6
3,525,228	+				-1.5
3,525,228	+				-2.5
3,525,228	+				-3.3
3,525,228	+				-1.4
3,525,228	+				-1.4
3,525,228	+				-1.9
3,525,228	+				-0.9
3,525,228	+				-1.8
3,525,228	+				-1.5
3,525,228	+				-2.1
3,525,228	+				-2.1
3,525,228	+				-0.9
3,525,228	+				-0.8
3,525,228	+				+0.1
3,525,229	-				-2.4
3,525,229	-				-0.0
3,525,229	-				-2.1
3,525,229	-				-0.0
3,525,229	-				-0.8
3,525,229	-				-2.7
3,525,229	-				-1.8
3,525,229	-				-1.3
3,525,229	-				-1.6
3,525,229	-				-2.8
3,525,229	-				-2.4
3,525,229	-				-0.8
3,525,831	+		LRK54_RS16015	0.35	-0.5
3,525,831	+		LRK54_RS16015	0.35	-2.0
3,525,832	-		LRK54_RS16015	0.35	-1.0
3,525,832	-		LRK54_RS16015	0.35	-0.6
3,526,194	+		LRK54_RS16015	0.54	+0.6
3,526,194	+		LRK54_RS16015	0.54	-1.0
3,526,194	+		LRK54_RS16015	0.54	-1.3
3,526,194	+		LRK54_RS16015	0.54	+0.5
3,526,195	-		LRK54_RS16015	0.54	+1.9
3,526,195	-		LRK54_RS16015	0.54	+0.5
3,526,195	-		LRK54_RS16015	0.54	+0.3
3,526,195	-		LRK54_RS16015	0.54	-1.6
3,526,195	-		LRK54_RS16015	0.54	-0.9
3,526,195	-		LRK54_RS16015	0.54	-0.2
3,526,195	-		LRK54_RS16015	0.54	-1.4
3,526,233	+		LRK54_RS16015	0.56	+0.2
3,526,234	-		LRK54_RS16015	0.56	-1.2
3,526,234	-		LRK54_RS16015	0.56	+0.6
3,526,234	-		LRK54_RS16015	0.56	+1.5
3,526,234	-		LRK54_RS16015	0.56	+0.4
3,526,343	+		LRK54_RS16015	0.62	+0.5
3,526,343	+		LRK54_RS16015	0.62	-2.1
3,526,343	+		LRK54_RS16015	0.62	-0.9
3,526,343	+		LRK54_RS16015	0.62	-1.7
3,526,343	+		LRK54_RS16015	0.62	-0.4
3,526,343	+		LRK54_RS16015	0.62	-1.5
3,526,343	+		LRK54_RS16015	0.62	-0.2
3,526,343	+		LRK54_RS16015	0.62	+0.9
3,526,343	+		LRK54_RS16015	0.62	-3.1
3,526,343	+		LRK54_RS16015	0.62	-3.3
3,526,343	+		LRK54_RS16015	0.62	-0.2
3,526,343	+		LRK54_RS16015	0.62	-1.2
3,526,343	+		LRK54_RS16015	0.62	-1.6
3,526,343	+		LRK54_RS16015	0.62	-1.6
3,526,343	+		LRK54_RS16015	0.62	-2.5
3,526,343	+		LRK54_RS16015	0.62	-2.1
3,526,343	+		LRK54_RS16015	0.62	-0.4
3,526,344	-		LRK54_RS16015	0.62	-0.2
3,526,344	-		LRK54_RS16015	0.62	-1.3
3,526,344	-		LRK54_RS16015	0.62	+0.6
3,526,344	-		LRK54_RS16015	0.62	-1.7
3,526,344	-		LRK54_RS16015	0.62	+0.2
3,526,344	-		LRK54_RS16015	0.62	-0.4
3,526,344	-		LRK54_RS16015	0.62	-0.9
3,526,344	-		LRK54_RS16015	0.62	-2.1
3,526,344	-		LRK54_RS16015	0.62	-1.6
3,526,344	-		LRK54_RS16015	0.62	-1.0
3,526,344	-		LRK54_RS16015	0.62	-2.5
3,526,344	-		LRK54_RS16015	0.62	-1.3
3,526,344	-		LRK54_RS16015	0.62	-1.4
3,526,344	-		LRK54_RS16015	0.62	-1.7
3,526,428	+		LRK54_RS16015	0.66	-1.7
3,526,428	+		LRK54_RS16015	0.66	-0.9
3,526,428	+		LRK54_RS16015	0.66	-1.3
3,526,428	+		LRK54_RS16015	0.66	-0.4
3,526,428	+		LRK54_RS16015	0.66	-1.8
3,526,428	+		LRK54_RS16015	0.66	+0.1
3,526,428	+		LRK54_RS16015	0.66	-0.6
3,526,428	+		LRK54_RS16015	0.66	-1.8
3,526,428	+		LRK54_RS16015	0.66	-0.5
3,526,428	+		LRK54_RS16015	0.66	+0.9
3,526,428	+		LRK54_RS16015	0.66	-1.4
3,526,428	+		LRK54_RS16015	0.66	-2.5
3,526,428	+		LRK54_RS16015	0.66	-0.4
3,526,428	+		LRK54_RS16015	0.66	-0.9
3,526,428	+		LRK54_RS16015	0.66	-0.2
3,526,428	+		LRK54_RS16015	0.66	-0.6
3,526,428	+		LRK54_RS16015	0.66	-0.1
3,526,428	+		LRK54_RS16015	0.66	-0.3
3,526,428	+		LRK54_RS16015	0.66	-1.2
3,526,428	+		LRK54_RS16015	0.66	-1.0
3,526,428	+		LRK54_RS16015	0.66	-2.3
3,526,428	+		LRK54_RS16015	0.66	-0.9
3,526,428	+		LRK54_RS16015	0.66	-0.6
3,526,428	+		LRK54_RS16015	0.66	-2.1
3,526,428	+		LRK54_RS16015	0.66	-2.3
3,526,428	+		LRK54_RS16015	0.66	-0.4
3,526,428	+		LRK54_RS16015	0.66	-0.0
3,526,428	+		LRK54_RS16015	0.66	-0.9
3,526,428	+		LRK54_RS16015	0.66	-0.9
3,526,428	+		LRK54_RS16015	0.66	-1.4
3,526,428	+		LRK54_RS16015	0.66	-0.4
3,526,428	+		LRK54_RS16015	0.66	-2.0
3,526,428	+		LRK54_RS16015	0.66	-0.5
3,526,428	+		LRK54_RS16015	0.66	-0.4
3,526,428	+		LRK54_RS16015	0.66	-1.1
3,526,428	+		LRK54_RS16015	0.66	-1.4
3,526,429	-		LRK54_RS16015	0.66	-0.8
3,526,429	-		LRK54_RS16015	0.66	-0.2
3,526,429	-		LRK54_RS16015	0.66	-1.6
3,526,429	-		LRK54_RS16015	0.66	-0.2
3,526,429	-		LRK54_RS16015	0.66	-2.2
3,526,429	-		LRK54_RS16015	0.66	-0.9
3,526,429	-		LRK54_RS16015	0.66	-1.7
3,526,429	-		LRK54_RS16015	0.66	-0.6
3,526,429	-		LRK54_RS16015	0.66	-2.7
3,526,429	-		LRK54_RS16015	0.66	-2.8
3,526,429	-		LRK54_RS16015	0.66	-1.6
3,526,429	-		LRK54_RS16015	0.66	-1.0
3,526,429	-		LRK54_RS16015	0.66	-0.1
3,526,429	-		LRK54_RS16015	0.66	+0.8
3,526,429	-		LRK54_RS16015	0.66	-0.9
3,526,429	-		LRK54_RS16015	0.66	-2.2
3,526,429	-		LRK54_RS16015	0.66	+0.1
3,526,429	-		LRK54_RS16015	0.66	-2.2
3,526,429	-		LRK54_RS16015	0.66	-2.1
3,526,429	-		LRK54_RS16015	0.66	-1.9
3,526,429	-		LRK54_RS16015	0.66	+0.2
3,526,429	-		LRK54_RS16015	0.66	-2.5
3,526,429	-		LRK54_RS16015	0.66	-1.2
3,526,467	+		LRK54_RS16015	0.68	-1.5
3,526,467	+		LRK54_RS16015	0.68	+0.8
3,526,468	-		LRK54_RS16015	0.68	-2.2
3,526,468	-		LRK54_RS16015	0.68	-1.5
3,526,468	-		LRK54_RS16015	0.68	+0.1
3,526,524	+		LRK54_RS16015	0.71	+1.4
3,526,524	+		LRK54_RS16015	0.71	+0.0
3,526,524	+		LRK54_RS16015	0.71	-0.8
3,526,524	+		LRK54_RS16015	0.71	-1.2
3,526,524	+		LRK54_RS16015	0.71	+0.3
3,526,525	-		LRK54_RS16015	0.71	-0.1
3,526,525	-		LRK54_RS16015	0.71	-1.1
3,526,525	-		LRK54_RS16015	0.71	-0.4
3,526,525	-		LRK54_RS16015	0.71	-0.5
3,526,525	-		LRK54_RS16015	0.71	-1.6
3,526,525	-		LRK54_RS16015	0.71	-1.4
3,526,525	-		LRK54_RS16015	0.71	+1.2
3,526,525	-		LRK54_RS16015	0.71	-1.6
3,526,590	+		LRK54_RS16015	0.75	-0.9
3,526,590	+		LRK54_RS16015	0.75	-0.1
3,526,590	+		LRK54_RS16015	0.75	-0.5
3,526,590	+		LRK54_RS16015	0.75	+0.0
3,526,590	+		LRK54_RS16015	0.75	-0.2
3,526,590	+		LRK54_RS16015	0.75	-0.5
3,526,590	+		LRK54_RS16015	0.75	-0.4
3,526,591	-		LRK54_RS16015	0.75	+0.1
3,526,591	-		LRK54_RS16015	0.75	-0.3
3,526,591	-		LRK54_RS16015	0.75	-0.8
3,526,591	-		LRK54_RS16015	0.75	-1.4
3,526,591	-		LRK54_RS16015	0.75	-0.3
3,526,591	-		LRK54_RS16015	0.75	-0.3
3,526,626	+		LRK54_RS16015	0.76	-0.6
3,526,626	+		LRK54_RS16015	0.76	+0.8
3,526,626	+		LRK54_RS16015	0.76	-2.1
3,526,626	+		LRK54_RS16015	0.76	-1.4
3,526,626	+		LRK54_RS16015	0.76	-0.9
3,526,626	+		LRK54_RS16015	0.76	-1.0
3,526,627	-		LRK54_RS16015	0.76	-1.7
3,526,627	-		LRK54_RS16015	0.76	-1.0
3,526,627	-		LRK54_RS16015	0.76	-0.4
3,526,627	-		LRK54_RS16015	0.76	-1.7
3,526,656	+		LRK54_RS16015	0.78	+0.2
3,526,657	-		LRK54_RS16015	0.78	-1.7
3,526,657	-		LRK54_RS16015	0.78	-0.5
3,526,788	+		LRK54_RS16015	0.85	-0.8
3,526,788	+		LRK54_RS16015	0.85	+1.1
3,526,788	+		LRK54_RS16015	0.85	-2.1
3,526,788	+		LRK54_RS16015	0.85	-0.9
3,526,788	+		LRK54_RS16015	0.85	-0.3
3,526,789	-		LRK54_RS16015	0.85	-1.4
3,526,789	-		LRK54_RS16015	0.85	-1.2
3,526,789	-		LRK54_RS16015	0.85	-0.4
3,526,789	-		LRK54_RS16015	0.85	-1.2
3,526,789	-		LRK54_RS16015	0.85	-0.8
3,526,801	-		LRK54_RS16015	0.85	-1.5
3,526,801	-		LRK54_RS16015	0.85	-0.0
3,526,851	+		LRK54_RS16015	0.88	-0.8
3,526,851	+		LRK54_RS16015	0.88	-2.3
3,526,851	+		LRK54_RS16015	0.88	-1.2
3,526,852	-		LRK54_RS16015	0.88	-1.1
3,526,852	-		LRK54_RS16015	0.88	-0.9
3,526,852	-		LRK54_RS16015	0.88	-0.8
3,526,852	-		LRK54_RS16015	0.88	-0.4
3,526,852	-		LRK54_RS16015	0.88	-0.4
3,526,852	-		LRK54_RS16015	0.88	-1.5
3,526,905	+				-0.1
3,526,905	+				-0.6
3,526,905	+				-0.9
3,526,905	+				+0.3
3,526,905	+				+0.1
3,526,905	+				+0.2
3,526,905	+				-2.2
3,526,905	+				+1.2
3,526,905	+				-0.1
3,526,905	+				-1.2
3,526,905	+				+1.2
3,526,905	+				-1.1
3,526,905	+				-0.2
3,526,905	+				-1.2
3,526,905	+				-0.2
3,526,905	+				-2.3
3,526,905	+				+0.3
3,526,905	+				-0.1
3,526,905	+				-0.3
3,526,905	+				-0.4
3,526,905	+				-0.4
3,526,905	+				+0.5
3,526,905	+				-0.6
3,526,905	+				+0.4
3,526,905	+				+0.1
3,526,905	+				-0.2
3,526,905	+				-0.4
3,526,905	+				+0.9
3,526,905	+				+0.1
3,526,905	+				+0.3
3,526,905	+				+0.0
3,526,905	+				+1.3
3,526,905	+				-0.4
3,526,905	+				+1.4
3,526,905	+				+0.3
3,526,905	+				-0.3
3,526,905	+				+0.2
3,526,905	+				-0.8
3,526,905	+				-1.7
3,526,905	+				-0.3
3,526,905	+				+0.1
3,526,905	+				+1.0
3,526,906	-				-1.1
3,526,906	-				+0.3
3,526,906	-				+0.4
3,526,906	-				-0.4
3,526,906	-				+0.3
3,526,906	-				-0.8
3,526,906	-				-0.9
3,526,906	-				+0.9
3,526,906	-				-0.8
3,526,906	-				-0.9
3,526,906	-				-0.8
3,526,906	-				+0.2
3,526,906	-				-0.5
3,526,906	-				-0.2
3,526,906	-				-0.3
3,526,906	-				-0.6
3,526,906	-				+0.6
3,526,906	-				-0.6
3,526,906	-				-0.2
3,526,906	-				-0.6
3,526,906	-				+0.4
3,526,906	-				-0.9
3,526,906	-				-0.8
3,526,906	-				+0.0
3,526,906	-				-1.2
3,526,906	-				+1.7
3,526,906	-				+0.8
3,526,906	-				+0.2
3,526,906	-				-0.1
3,526,906	-				-1.7
3,527,013	+				+1.9
3,527,013	+				+0.3
3,527,013	+				-0.7
3,527,013	+				-1.5
3,527,014	-				-1.0
3,527,014	-				-1.2
3,527,014	-				+0.0
3,527,014	-				-0.5
3,527,014	-				-1.8
3,527,079	+				+0.4
3,527,079	+				+0.0
3,527,079	+				-1.2
3,527,079	+				+0.6
3,527,079	+				-0.4
3,527,079	+				+0.7
3,527,079	+				-1.1
3,527,079	+				-0.7
3,527,079	+				-0.3
3,527,079	+				-0.4
3,527,079	+				-0.0
3,527,079	+				+1.9
3,527,079	+				-0.5
3,527,079	+				-0.6
3,527,079	+				+0.0
3,527,079	+				-2.3
3,527,079	+				-1.6
3,527,079	+				+0.7
3,527,079	+				+1.2
3,527,079	+				+0.5
3,527,079	+				+1.4
3,527,079	+				-0.5
3,527,079	+				-0.6
3,527,079	+				-0.9
3,527,079	+				-0.8
3,527,079	+				-0.4
3,527,079	+				-0.4
3,527,079	+				-0.7
3,527,080	-				-0.8
3,527,080	-				+0.4
3,527,080	-				-0.5
3,527,080	-				-1.4
3,527,080	-				+0.2
3,527,080	-				+0.5
3,527,080	-				-1.7
3,527,080	-				-1.0
3,527,080	-				-0.3
3,527,080	-				+1.1
3,527,080	-				+1.0
3,527,080	-				-0.5
3,527,080	-				+0.3
3,527,080	-				+0.4
3,527,080	-				-0.2
3,527,080	-				+0.2
3,527,080	-				-0.7
3,527,080	-				-0.6
3,527,080	-				-0.3
3,527,080	-				-1.8
3,527,080	-				-0.2
3,527,080	-				+0.4
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3,527,707	-		LRK54_RS16020	0.26	-0.6
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3,527,865	+		LRK54_RS16020	0.40	-0.3
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