Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15020

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,319,603	+		LRK54_RS15015	0.51	+1.0
3,319,603	+		LRK54_RS15015	0.51	+0.4
3,319,603	+		LRK54_RS15015	0.51	+1.2
3,319,603	+		LRK54_RS15015	0.51	-0.5
3,319,603	+		LRK54_RS15015	0.51	+0.7
3,319,694	+		LRK54_RS15015	0.57	+1.0
3,319,695	-		LRK54_RS15015	0.57	+0.8
3,319,721	+		LRK54_RS15015	0.59	+0.5
3,319,721	+		LRK54_RS15015	0.59	+1.4
3,319,721	+		LRK54_RS15015	0.59	+1.3
3,319,722	-		LRK54_RS15015	0.59	-0.2
3,320,438	+				-0.4
3,320,439	-				+0.8
3,320,468	+				-2.1
3,320,468	+				-1.2
3,320,468	+				-1.0
3,320,468	+				-1.3
3,320,469	-				+0.9
3,320,469	-				-0.9
3,320,469	-				-1.0
3,320,501	+				-0.4
3,320,501	+				+0.8
3,320,501	+				-1.2
3,320,502	-				-2.6
3,320,502	-				-1.6
3,320,502	-				-1.4
3,320,663	+		LRK54_RS15020	0.11	-1.1
3,320,663	+		LRK54_RS15020	0.11	-1.0
3,320,663	+		LRK54_RS15020	0.11	-1.8
3,320,663	+		LRK54_RS15020	0.11	-0.5
3,320,663	+		LRK54_RS15020	0.11	-0.9
3,320,663	+		LRK54_RS15020	0.11	+0.5
3,320,663	+		LRK54_RS15020	0.11	-1.9
3,320,663	+		LRK54_RS15020	0.11	-0.9
3,320,663	+		LRK54_RS15020	0.11	-1.9
3,320,663	+		LRK54_RS15020	0.11	-1.2
3,320,663	+		LRK54_RS15020	0.11	+0.0
3,320,663	+		LRK54_RS15020	0.11	-3.1
3,320,663	+		LRK54_RS15020	0.11	-2.1
3,320,663	+		LRK54_RS15020	0.11	-3.7
3,320,663	+		LRK54_RS15020	0.11	-1.0
3,320,664	-		LRK54_RS15020	0.11	-1.2
3,320,664	-		LRK54_RS15020	0.11	-1.6
3,320,664	-		LRK54_RS15020	0.11	-1.1
3,320,664	-		LRK54_RS15020	0.11	-1.6
3,320,664	-		LRK54_RS15020	0.11	+0.1
3,320,664	-		LRK54_RS15020	0.11	-1.2
3,320,664	-		LRK54_RS15020	0.11	-2.2
3,320,664	-		LRK54_RS15020	0.11	-1.9
3,320,664	-		LRK54_RS15020	0.11	-1.0
3,320,664	-		LRK54_RS15020	0.11	-2.9
3,320,664	-		LRK54_RS15020	0.11	-1.0
3,320,664	-		LRK54_RS15020	0.11	-1.8
3,320,664	-		LRK54_RS15020	0.11	-1.9
3,320,664	-		LRK54_RS15020	0.11	-1.8
3,320,664	-		LRK54_RS15020	0.11	-1.9
3,320,664	-		LRK54_RS15020	0.11	-1.7
3,320,664	-		LRK54_RS15020	0.11	-1.3
3,320,664	-		LRK54_RS15020	0.11	-1.3
3,320,664	-		LRK54_RS15020	0.11	-0.5
3,320,664	-		LRK54_RS15020	0.11	-0.6
3,320,664	-		LRK54_RS15020	0.11	-1.2
3,320,664	-		LRK54_RS15020	0.11	-0.9
3,320,664	-		LRK54_RS15020	0.11	-2.5
3,320,664	-		LRK54_RS15020	0.11	-1.2
3,320,664	-		LRK54_RS15020	0.11	-2.0
3,320,664	-		LRK54_RS15020	0.11	+0.3
3,320,664	-		LRK54_RS15020	0.11	-1.7
3,320,664	-		LRK54_RS15020	0.11	-0.1
3,320,664	-		LRK54_RS15020	0.11	-0.5
3,320,696	+		LRK54_RS15020	0.13	-1.3
3,320,696	+		LRK54_RS15020	0.13	-0.8
3,320,696	+		LRK54_RS15020	0.13	-0.3
3,320,696	+		LRK54_RS15020	0.13	+0.9
3,320,696	+		LRK54_RS15020	0.13	-1.2
3,320,696	+		LRK54_RS15020	0.13	-1.1
3,320,696	+		LRK54_RS15020	0.13	-0.8
3,320,696	+		LRK54_RS15020	0.13	-1.0
3,320,697	-		LRK54_RS15020	0.13	-1.1
3,320,697	-		LRK54_RS15020	0.13	-1.9
3,320,697	-		LRK54_RS15020	0.13	-1.6
3,320,697	-		LRK54_RS15020	0.13	-0.7
3,320,697	-		LRK54_RS15020	0.13	-0.6
3,320,697	-		LRK54_RS15020	0.13	-0.7
3,320,697	-		LRK54_RS15020	0.13	-1.4
3,320,697	-		LRK54_RS15020	0.13	-1.4
3,320,697	-		LRK54_RS15020	0.13	-1.0
3,320,697	-		LRK54_RS15020	0.13	-2.5
3,320,697	-		LRK54_RS15020	0.13	-1.1
3,320,697	-		LRK54_RS15020	0.13	-0.5
3,320,834	+		LRK54_RS15020	0.19	-1.0
3,320,834	+		LRK54_RS15020	0.19	-0.7
3,320,834	+		LRK54_RS15020	0.19	-0.6
3,320,834	+		LRK54_RS15020	0.19	-1.5
3,320,835	-		LRK54_RS15020	0.19	-2.0
3,320,835	-		LRK54_RS15020	0.19	-1.8
3,320,835	-		LRK54_RS15020	0.19	-1.0
3,320,835	-		LRK54_RS15020	0.19	-0.7
3,320,951	+		LRK54_RS15020	0.25	-1.8
3,320,952	-		LRK54_RS15020	0.25	-2.2
3,321,080	+		LRK54_RS15020	0.31	-0.4
3,321,080	+		LRK54_RS15020	0.31	-1.5
3,321,080	+		LRK54_RS15020	0.31	-1.4
3,321,080	+		LRK54_RS15020	0.31	-0.8
3,321,080	+		LRK54_RS15020	0.31	+0.3
3,321,080	+		LRK54_RS15020	0.31	-1.0
3,321,080	+		LRK54_RS15020	0.31	-0.6
3,321,080	+		LRK54_RS15020	0.31	-0.3
3,321,080	+		LRK54_RS15020	0.31	-0.5
3,321,080	+		LRK54_RS15020	0.31	-1.3
3,321,080	+		LRK54_RS15020	0.31	-2.3
3,321,080	+		LRK54_RS15020	0.31	-0.9
3,321,080	+		LRK54_RS15020	0.31	-0.7
3,321,080	+		LRK54_RS15020	0.31	-2.6
3,321,081	-		LRK54_RS15020	0.31	-0.8
3,321,081	-		LRK54_RS15020	0.31	-1.3
3,321,081	-		LRK54_RS15020	0.31	-0.1
3,321,081	-		LRK54_RS15020	0.31	-1.8
3,321,081	-		LRK54_RS15020	0.31	-2.1
3,321,081	-		LRK54_RS15020	0.31	+0.2
3,321,081	-		LRK54_RS15020	0.31	-1.7
3,321,081	-		LRK54_RS15020	0.31	-1.9
3,321,081	-		LRK54_RS15020	0.31	+0.2
3,321,081	-		LRK54_RS15020	0.31	-1.5
3,321,081	-		LRK54_RS15020	0.31	-0.3
3,321,081	-		LRK54_RS15020	0.31	-1.5
3,321,081	-		LRK54_RS15020	0.31	-1.4
3,321,081	-		LRK54_RS15020	0.31	-2.5
3,321,081	-		LRK54_RS15020	0.31	-0.9
3,321,081	-		LRK54_RS15020	0.31	+0.4
3,321,081	-		LRK54_RS15020	0.31	-2.5
3,321,081	-		LRK54_RS15020	0.31	-0.9
3,321,104	+		LRK54_RS15020	0.32	-0.4
3,321,104	+		LRK54_RS15020	0.32	-1.5
3,321,104	+		LRK54_RS15020	0.32	-1.9
3,321,104	+		LRK54_RS15020	0.32	-0.7
3,321,104	+		LRK54_RS15020	0.32	+0.9
3,321,104	+		LRK54_RS15020	0.32	-1.6
3,321,104	+		LRK54_RS15020	0.32	-1.0
3,321,104	+		LRK54_RS15020	0.32	-0.4
3,321,104	+		LRK54_RS15020	0.32	+1.0
3,321,104	+		LRK54_RS15020	0.32	-0.6
3,321,104	+		LRK54_RS15020	0.32	-0.7
3,321,104	+		LRK54_RS15020	0.32	+0.0
3,321,104	+		LRK54_RS15020	0.32	-1.3
3,321,104	+		LRK54_RS15020	0.32	+0.7
3,321,105	-		LRK54_RS15020	0.32	-0.9
3,321,105	-		LRK54_RS15020	0.32	+1.6
3,321,105	-		LRK54_RS15020	0.32	-1.5
3,321,105	-		LRK54_RS15020	0.32	-0.8
3,321,105	-		LRK54_RS15020	0.32	-1.1
3,321,105	-		LRK54_RS15020	0.32	-1.5
3,321,105	-		LRK54_RS15020	0.32	-2.2
3,321,105	-		LRK54_RS15020	0.32	-0.6
3,321,105	-		LRK54_RS15020	0.32	-1.6
3,321,105	-		LRK54_RS15020	0.32	-0.5
3,321,105	-		LRK54_RS15020	0.32	-0.9
3,321,105	-		LRK54_RS15020	0.32	-1.0
3,321,105	-		LRK54_RS15020	0.32	-0.9
3,321,105	-		LRK54_RS15020	0.32	+2.0
3,321,105	-		LRK54_RS15020	0.32	+0.3
3,321,105	-		LRK54_RS15020	0.32	-1.0
3,321,105	-		LRK54_RS15020	0.32	-0.9
3,321,105	-		LRK54_RS15020	0.32	-1.1
3,321,105	-		LRK54_RS15020	0.32	-1.3
3,321,105	-		LRK54_RS15020	0.32	+0.4
3,321,128	+		LRK54_RS15020	0.33	-0.5
3,321,128	+		LRK54_RS15020	0.33	-1.7
3,321,129	-		LRK54_RS15020	0.33	-0.9
3,321,129	-		LRK54_RS15020	0.33	-0.9
3,321,129	-		LRK54_RS15020	0.33	-2.8
3,321,129	-		LRK54_RS15020	0.33	+0.0
3,321,129	-		LRK54_RS15020	0.33	-2.1
3,321,189	-		LRK54_RS15020	0.36	-0.3
3,321,189	-		LRK54_RS15020	0.36	-1.8
3,321,203	+		LRK54_RS15020	0.37	-2.2
3,321,203	+		LRK54_RS15020	0.37	-1.4
3,321,203	+		LRK54_RS15020	0.37	-0.2
3,321,203	+		LRK54_RS15020	0.37	-0.1
3,321,203	+		LRK54_RS15020	0.37	-0.5
3,321,203	+		LRK54_RS15020	0.37	-2.7
3,321,204	-		LRK54_RS15020	0.37	-2.4
3,321,204	-		LRK54_RS15020	0.37	-0.4
3,321,204	-		LRK54_RS15020	0.37	-2.5
3,321,362	+		LRK54_RS15020	0.45	-1.6
3,321,443	+		LRK54_RS15020	0.48	-1.5
3,321,443	+		LRK54_RS15020	0.48	-1.7
3,321,443	+		LRK54_RS15020	0.48	-0.2
3,321,444	-		LRK54_RS15020	0.49	-0.5
3,321,444	-		LRK54_RS15020	0.49	-0.9
3,321,569	+		LRK54_RS15020	0.54	-2.3
3,321,569	+		LRK54_RS15020	0.54	-2.1
3,321,569	+		LRK54_RS15020	0.54	-0.8
3,321,569	+		LRK54_RS15020	0.54	-1.7
3,321,569	+		LRK54_RS15020	0.54	-2.5
3,321,569	+		LRK54_RS15020	0.54	-0.5
3,321,569	+		LRK54_RS15020	0.54	-1.1
3,321,569	+		LRK54_RS15020	0.54	-1.9
3,321,569	+		LRK54_RS15020	0.54	-1.3
3,321,569	+		LRK54_RS15020	0.54	-0.2
3,321,569	+		LRK54_RS15020	0.54	-1.0
3,321,569	+		LRK54_RS15020	0.54	-1.3
3,321,569	+		LRK54_RS15020	0.54	-1.5
3,321,570	-		LRK54_RS15020	0.55	+0.8
3,321,570	-		LRK54_RS15020	0.55	-0.7
3,321,570	-		LRK54_RS15020	0.55	-1.0
3,321,570	-		LRK54_RS15020	0.55	-0.6
3,321,570	-		LRK54_RS15020	0.55	+0.8
3,321,570	-		LRK54_RS15020	0.55	-1.4
3,321,570	-		LRK54_RS15020	0.55	-0.4
3,321,570	-		LRK54_RS15020	0.55	-1.4
3,321,570	-		LRK54_RS15020	0.55	-0.2
3,321,615	-		LRK54_RS15020	0.57	-2.1
3,321,809	+		LRK54_RS15020	0.66	-0.1
3,321,809	+		LRK54_RS15020	0.66	-2.0
3,321,809	+		LRK54_RS15020	0.66	-1.3
3,321,810	-		LRK54_RS15020	0.66	-0.6
3,321,810	-		LRK54_RS15020	0.66	-1.5
3,321,810	-		LRK54_RS15020	0.66	-1.4
3,321,810	-		LRK54_RS15020	0.66	-0.7
3,321,810	-		LRK54_RS15020	0.66	-1.5
3,322,097	+		LRK54_RS15020	0.80	-2.1
3,322,097	+		LRK54_RS15020	0.80	-0.2
3,322,097	+		LRK54_RS15020	0.80	-0.9
3,322,097	+		LRK54_RS15020	0.80	-0.6
3,322,202	+		LRK54_RS15020	0.85	-2.2
3,322,202	+		LRK54_RS15020	0.85	-1.5
3,322,202	+		LRK54_RS15020	0.85	-1.1
3,322,202	+		LRK54_RS15020	0.85	-1.0
3,322,203	-		LRK54_RS15020	0.85	-2.6
3,322,203	-		LRK54_RS15020	0.85	-1.5
3,322,203	-		LRK54_RS15020	0.85	+1.9
3,322,203	-		LRK54_RS15020	0.85	-0.9
3,322,203	-		LRK54_RS15020	0.85	-1.4
3,322,203	-		LRK54_RS15020	0.85	-1.4
3,322,203	-		LRK54_RS15020	0.85	-2.1
3,322,240	-		LRK54_RS15020	0.87	-0.4
3,322,240	-		LRK54_RS15020	0.87	+1.4
3,322,295	+		LRK54_RS15020	0.89	-1.2
3,322,295	+		LRK54_RS15020	0.89	+0.9
3,322,296	-		LRK54_RS15020	0.89	-1.9
3,322,296	-		LRK54_RS15020	0.89	-0.7
3,322,370	+				+0.9
3,322,371	-				-1.7
3,322,371	-				-0.4
3,322,463	+				-0.6
3,322,463	+				-1.8
3,322,463	+				-1.0
3,322,463	+				+1.4
3,322,463	+				-1.4
3,322,463	+				-1.3
3,322,464	-				-1.0
3,322,464	-				-1.8
3,322,464	-				-0.9
3,322,464	-				-0.7
3,322,464	-				-0.8
3,322,464	-				-0.7
3,322,464	-				-0.7
3,322,803	+		LRK54_RS15025	0.15	-1.5
3,322,803	+		LRK54_RS15025	0.15	-0.3
3,322,804	-		LRK54_RS15025	0.15	+0.9
3,322,804	-		LRK54_RS15025	0.15	-1.0
3,322,869	+		LRK54_RS15025	0.20	+0.1
3,322,869	+		LRK54_RS15025	0.20	+1.0
3,322,869	+		LRK54_RS15025	0.20	-0.5
3,322,869	+		LRK54_RS15025	0.20	+0.6
3,322,869	+		LRK54_RS15025	0.20	+0.7
3,322,869	+		LRK54_RS15025	0.20	+0.4
3,322,870	-		LRK54_RS15025	0.20	-0.1
3,322,870	-		LRK54_RS15025	0.20	-0.9
3,322,870	-		LRK54_RS15025	0.20	-0.3
3,322,870	-		LRK54_RS15025	0.20	+0.8
3,322,870	-		LRK54_RS15025	0.20	-0.1
3,322,929	+		LRK54_RS15025	0.25	+0.2
3,322,929	+		LRK54_RS15025	0.25	+0.4
3,322,929	+		LRK54_RS15025	0.25	+0.5
3,322,929	+		LRK54_RS15025	0.25	-0.1
3,322,929	+		LRK54_RS15025	0.25	+0.5
3,322,930	-		LRK54_RS15025	0.25	+0.0
3,323,241	+		LRK54_RS15025	0.49	-0.3
3,323,241	+		LRK54_RS15025	0.49	+0.4
3,323,242	-		LRK54_RS15025	0.49	-0.3