Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12690

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,838,454	+		LRK54_RS12685	0.75	-0.6
2,838,454	+		LRK54_RS12685	0.75	-1.5
2,838,455	-		LRK54_RS12685	0.75	-1.3
2,838,455	-		LRK54_RS12685	0.75	-1.7
2,838,531	+		LRK54_RS12685	0.79	+0.7
2,838,531	+		LRK54_RS12685	0.79	-0.1
2,838,532	-		LRK54_RS12685	0.79	-0.5
2,838,532	-		LRK54_RS12685	0.79	-0.8
2,838,532	-		LRK54_RS12685	0.79	-1.2
2,838,532	-		LRK54_RS12685	0.79	-0.1
2,838,532	-		LRK54_RS12685	0.79	-0.5
2,838,693	+		LRK54_RS12685	0.86	-0.2
2,838,694	-		LRK54_RS12685	0.86	+0.9
2,838,771	+		LRK54_RS12685	0.90	+1.1
2,838,771	+		LRK54_RS12685	0.90	-0.2
2,838,771	+		LRK54_RS12685	0.90	-1.0
2,838,771	+		LRK54_RS12685	0.90	-0.1
2,838,772	-		LRK54_RS12685	0.90	-0.6
2,838,772	-		LRK54_RS12685	0.90	-0.9
2,838,772	-		LRK54_RS12685	0.90	+2.0
2,838,772	-		LRK54_RS12685	0.90	-0.6
2,838,772	-		LRK54_RS12685	0.90	-0.1
2,838,772	-		LRK54_RS12685	0.90	-1.6
2,838,842	+				-0.2
2,838,902	+				-2.1
2,838,902	+				-1.5
2,838,903	-				-0.2
2,839,068	+				-0.1
2,839,068	+				-0.3
2,839,069	-				+0.2
2,839,072	+				-0.1
2,839,073	-				+0.8
2,839,117	+				-2.0
2,839,118	-				-0.6
2,839,142	+				-1.7
2,839,190	+				+0.1
2,839,241	-				-0.7
2,839,356	-		LRK54_RS12690	0.16	-0.9
2,839,356	-		LRK54_RS12690	0.16	-2.5
2,839,362	+		LRK54_RS12690	0.18	-1.4
2,839,363	-		LRK54_RS12690	0.19	-1.3
2,839,385	+		LRK54_RS12690	0.28	-0.9
2,839,398	-		LRK54_RS12690	0.33	-1.9
2,839,462	-		LRK54_RS12690	0.60	-0.6
2,839,462	-		LRK54_RS12690	0.60	-0.8
2,839,485	+		LRK54_RS12690	0.70	-0.6
2,839,485	+		LRK54_RS12690	0.70	-0.6
2,839,485	+		LRK54_RS12690	0.70	+0.5
2,839,486	-		LRK54_RS12690	0.70	-0.6
2,839,486	-		LRK54_RS12690	0.70	-1.2
2,839,509	+		LRK54_RS12690	0.80	-1.3
2,839,509	+		LRK54_RS12690	0.80	-1.0
2,839,510	-		LRK54_RS12690	0.81	-0.2
2,839,512	+		LRK54_RS12690	0.81	-0.3
2,839,512	+		LRK54_RS12690	0.81	+0.3
2,839,518	+		LRK54_RS12690	0.84	-0.9
2,839,619	+				-0.7
2,839,633	+				+0.1
2,839,642	+				-1.5
2,839,643	-				-0.4
2,839,643	-				-3.2
2,839,674	+				-0.5
2,839,674	+				+0.3
2,839,675	-				-0.9
2,839,680	+				-0.7
2,839,681	-				-0.5
2,839,762	-				-0.7
2,839,767	-				-0.3
2,839,783	+				-0.6
2,839,842	-				-0.7
2,839,849	+				-1.9
2,839,849	+				+0.1
2,839,852	+				-1.5
2,839,866	+				-0.7
2,839,867	-				-0.9
2,839,870	-				-0.4
2,839,870	-				+0.6
2,839,909	-				-1.4
2,839,931	+				+0.2
2,839,931	+				-0.4
2,839,931	+				-2.4
2,839,932	-				-0.1
2,839,939	+				+0.2
2,839,940	-				-0.1
2,839,940	-				-0.4
2,839,940	-				-0.6
2,839,943	+				-0.7
2,839,976	+				+0.7
2,839,976	+				-0.7
2,839,977	-				-1.1
2,839,977	-				-1.5
2,839,977	-				-0.3
2,839,979	-				-1.6
2,840,008	+				-0.9
2,840,008	+				-0.6
2,840,009	-				+0.2
2,840,009	-				-2.7
2,840,014	+				-0.6
2,840,015	-				-0.1
2,840,015	-				-0.5
2,840,015	-				-1.7
2,840,015	-				-1.2
2,840,015	-				+0.8
2,840,015	-				-0.4
2,840,085	+		LRK54_RS12695	0.13	-0.5
2,840,085	+		LRK54_RS12695	0.13	-1.9
2,840,086	-		LRK54_RS12695	0.13	-1.2
2,840,089	+		LRK54_RS12695	0.13	-0.6
2,840,090	-		LRK54_RS12695	0.13	-1.3
2,840,097	+		LRK54_RS12695	0.14	-0.4
2,840,097	+		LRK54_RS12695	0.14	-1.6
2,840,100	+		LRK54_RS12695	0.14	-0.9
2,840,101	-		LRK54_RS12695	0.15	-1.6
2,840,104	-		LRK54_RS12695	0.15	-0.5
2,840,107	+		LRK54_RS12695	0.15	-0.3
2,840,108	-		LRK54_RS12695	0.15	-1.5
2,840,108	-		LRK54_RS12695	0.15	-0.3
2,840,108	-		LRK54_RS12695	0.15	+0.2
2,840,118	-		LRK54_RS12695	0.17	-1.3
2,840,139	+		LRK54_RS12695	0.19	-1.0
2,840,139	+		LRK54_RS12695	0.19	-0.0
2,840,140	-		LRK54_RS12695	0.19	-0.5
2,840,140	-		LRK54_RS12695	0.19	-0.1
2,840,140	-		LRK54_RS12695	0.19	-0.6
2,840,145	+		LRK54_RS12695	0.20	-1.2
2,840,152	-		LRK54_RS12695	0.20	-0.1
2,840,152	-		LRK54_RS12695	0.20	-0.9
2,840,152	-		LRK54_RS12695	0.20	-0.6
2,840,152	-		LRK54_RS12695	0.20	+0.1
2,840,152	-		LRK54_RS12695	0.20	-0.9
2,840,152	-		LRK54_RS12695	0.20	-0.9
2,840,152	-		LRK54_RS12695	0.20	-1.0
2,840,152	-		LRK54_RS12695	0.20	-0.0
2,840,155	+		LRK54_RS12695	0.21	-0.3
2,840,155	+		LRK54_RS12695	0.21	-0.6
2,840,155	+		LRK54_RS12695	0.21	-1.8
2,840,156	-		LRK54_RS12695	0.21	-0.8
2,840,156	-		LRK54_RS12695	0.21	-0.3
2,840,185	+		LRK54_RS12695	0.24	-0.1
2,840,185	+		LRK54_RS12695	0.24	-2.1
2,840,185	+		LRK54_RS12695	0.24	-0.3
2,840,185	+		LRK54_RS12695	0.24	-1.4
2,840,185	+		LRK54_RS12695	0.24	-0.5
2,840,185	+		LRK54_RS12695	0.24	-1.4
2,840,186	-		LRK54_RS12695	0.24	+0.0
2,840,186	-		LRK54_RS12695	0.24	+0.9
2,840,186	-		LRK54_RS12695	0.24	+0.1
2,840,186	-		LRK54_RS12695	0.24	+1.4
2,840,186	-		LRK54_RS12695	0.24	-0.8
2,840,244	-		LRK54_RS12695	0.31	+1.2
2,840,313	+		LRK54_RS12695	0.39	-0.7
2,840,314	-		LRK54_RS12695	0.39	+0.4
2,840,317	+		LRK54_RS12695	0.39	-0.6
2,840,317	+		LRK54_RS12695	0.39	-1.9
2,840,317	+		LRK54_RS12695	0.39	-0.2
2,840,317	+		LRK54_RS12695	0.39	-0.6
2,840,317	+		LRK54_RS12695	0.39	-1.1
2,840,317	+		LRK54_RS12695	0.39	+0.7
2,840,318	-		LRK54_RS12695	0.39	-1.2
2,840,318	-		LRK54_RS12695	0.39	+1.0
2,840,318	-		LRK54_RS12695	0.39	-1.1
2,840,321	+		LRK54_RS12695	0.40	-1.3
2,840,321	+		LRK54_RS12695	0.40	-1.1
2,840,321	+				+1.1
2,840,321	+		LRK54_RS12695	0.40	-0.9
2,840,321	+		LRK54_RS12695	0.40	+0.2
2,840,322	-		LRK54_RS12695	0.40	-1.3
2,840,343	+		LRK54_RS12695	0.42	-0.4
2,840,404	+		LRK54_RS12695	0.49	-2.5
2,840,407	+		LRK54_RS12695	0.50	-0.7
2,840,408	-		LRK54_RS12695	0.50	-0.4
2,840,419	+		LRK54_RS12695	0.51	-0.4
2,840,421	+		LRK54_RS12695	0.51	-0.0
2,840,422	-		LRK54_RS12695	0.51	-1.3
2,840,431	+		LRK54_RS12695	0.52	-0.6
2,840,431	+		LRK54_RS12695	0.52	-0.9
2,840,477	+		LRK54_RS12695	0.58	-1.0
2,840,477	+		LRK54_RS12695	0.58	-0.6
2,840,477	+		LRK54_RS12695	0.58	-0.8
2,840,480	+		LRK54_RS12695	0.58	-0.3
2,840,481	-		LRK54_RS12695	0.58	-0.9
2,840,509	+		LRK54_RS12695	0.61	-0.7
2,840,510	-		LRK54_RS12695	0.61	-0.8
2,840,518	+		LRK54_RS12695	0.62	-0.9
2,840,519	-		LRK54_RS12695	0.62	-1.6
2,840,519	-		LRK54_RS12695	0.62	-0.5
2,840,524	+		LRK54_RS12695	0.63	-0.5
2,840,524	+		LRK54_RS12695	0.63	+1.4
2,840,524	+		LRK54_RS12695	0.63	-0.7
2,840,524	+		LRK54_RS12695	0.63	+0.4
2,840,524	+		LRK54_RS12695	0.63	+1.2
2,840,525	-		LRK54_RS12695	0.63	-0.2
2,840,525	-		LRK54_RS12695	0.63	-1.1
2,840,525	-		LRK54_RS12695	0.63	-0.8
2,840,550	+		LRK54_RS12695	0.66	-0.5
2,840,550	+		LRK54_RS12695	0.66	+0.1
2,840,550	+		LRK54_RS12695	0.66	+0.4
2,840,551	-		LRK54_RS12695	0.66	-1.3