Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11170

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,478,671	+		LRK54_RS11165	0.33	+1.4
2,478,671	+		LRK54_RS11165	0.33	-0.2
2,478,671	+		LRK54_RS11165	0.33	-0.6
2,478,671	+		LRK54_RS11165	0.33	-0.1
2,478,671	+		LRK54_RS11165	0.33	-0.7
2,478,672	-		LRK54_RS11165	0.33	-0.1
2,478,672	-		LRK54_RS11165	0.33	-0.4
2,478,672	-		LRK54_RS11165	0.33	-0.4
2,478,672	-		LRK54_RS11165	0.33	-1.1
2,478,672	-		LRK54_RS11165	0.33	+1.3
2,478,890	+		LRK54_RS11165	0.50	+0.1
2,478,890	+		LRK54_RS11165	0.50	-0.6
2,478,890	+		LRK54_RS11165	0.50	-0.8
2,478,891	-		LRK54_RS11165	0.50	-0.2
2,478,891	-		LRK54_RS11165	0.50	-0.3
2,478,891	-		LRK54_RS11165	0.50	-1.1
2,478,891	-		LRK54_RS11165	0.50	-0.5
2,478,891	-		LRK54_RS11165	0.50	-0.4
2,478,891	-		LRK54_RS11165	0.50	+0.4
2,478,891	-		LRK54_RS11165	0.50	-1.7
2,479,136	+		LRK54_RS11165	0.69	+0.2
2,479,136	+		LRK54_RS11165	0.69	+0.1
2,479,136	+		LRK54_RS11165	0.69	-1.3
2,479,136	+		LRK54_RS11165	0.69	+1.9
2,479,136	+		LRK54_RS11165	0.69	-0.2
2,479,136	+		LRK54_RS11165	0.69	+0.7
2,479,136	+		LRK54_RS11165	0.69	-2.0
2,479,136	+		LRK54_RS11165	0.69	-0.2
2,479,136	+		LRK54_RS11165	0.69	-0.1
2,479,136	+		LRK54_RS11165	0.69	-1.7
2,479,136	+		LRK54_RS11165	0.69	+0.3
2,479,136	+		LRK54_RS11165	0.69	+0.1
2,479,136	+		LRK54_RS11165	0.69	+1.0
2,479,136	+		LRK54_RS11165	0.69	-0.4
2,479,136	+		LRK54_RS11165	0.69	+0.3
2,479,137	-		LRK54_RS11165	0.69	-0.2
2,479,137	-		LRK54_RS11165	0.69	-0.3
2,479,137	-		LRK54_RS11165	0.69	-0.0
2,479,137	-		LRK54_RS11165	0.69	-0.7
2,479,137	-		LRK54_RS11165	0.69	+0.0
2,479,137	-		LRK54_RS11165	0.69	-0.0
2,479,137	-		LRK54_RS11165	0.69	+0.0
2,479,142	+		LRK54_RS11165	0.70	-1.4
2,479,142	+		LRK54_RS11165	0.70	-0.6
2,479,142	+		LRK54_RS11165	0.70	+0.1
2,479,142	+		LRK54_RS11165	0.70	+0.2
2,479,142	+		LRK54_RS11165	0.70	+0.3
2,479,142	+		LRK54_RS11165	0.70	-1.2
2,479,142	+		LRK54_RS11165	0.70	+1.1
2,479,142	+		LRK54_RS11165	0.70	-0.9
2,479,142	+		LRK54_RS11165	0.70	-1.2
2,479,142	+		LRK54_RS11165	0.70	-0.2
2,479,142	+		LRK54_RS11165	0.70	-1.8
2,479,142	+		LRK54_RS11165	0.70	+0.3
2,479,142	+		LRK54_RS11165	0.70	-0.2
2,479,142	+		LRK54_RS11165	0.70	+1.2
2,479,143	-		LRK54_RS11165	0.70	-0.8
2,479,143	-		LRK54_RS11165	0.70	-0.2
2,479,143	-		LRK54_RS11165	0.70	+1.2
2,479,143	-		LRK54_RS11165	0.70	-0.6
2,479,143	-		LRK54_RS11165	0.70	-0.1
2,479,143	-		LRK54_RS11165	0.70	+0.0
2,479,143	-		LRK54_RS11165	0.70	-0.4
2,479,143	-		LRK54_RS11165	0.70	-1.9
2,479,143	-		LRK54_RS11165	0.70	-0.4
2,479,143	-		LRK54_RS11165	0.70	-0.7
2,479,143	-		LRK54_RS11165	0.70	-1.2
2,479,143	-		LRK54_RS11165	0.70	-0.4
2,479,143	-		LRK54_RS11165	0.70	-0.2
2,479,143	-		LRK54_RS11165	0.70	-1.0
2,479,143	-		LRK54_RS11165	0.70	-1.0
2,479,143	-		LRK54_RS11165	0.70	-0.6
2,479,250	+		LRK54_RS11165	0.78	+1.6
2,479,250	+		LRK54_RS11165	0.78	-2.0
2,479,250	+		LRK54_RS11165	0.78	-0.2
2,479,250	+		LRK54_RS11165	0.78	+0.9
2,479,250	+		LRK54_RS11165	0.78	-0.2
2,479,250	+		LRK54_RS11165	0.78	+0.3
2,479,250	+		LRK54_RS11165	0.78	-0.3
2,479,250	+		LRK54_RS11165	0.78	+1.1
2,479,250	+		LRK54_RS11165	0.78	-0.8
2,479,250	+		LRK54_RS11165	0.78	-0.1
2,479,250	+		LRK54_RS11165	0.78	-0.5
2,479,250	+		LRK54_RS11165	0.78	-0.3
2,479,250	+		LRK54_RS11165	0.78	+0.1
2,479,250	+		LRK54_RS11165	0.78	+0.2
2,479,250	+		LRK54_RS11165	0.78	-0.1
2,479,250	+		LRK54_RS11165	0.78	+0.1
2,479,250	+		LRK54_RS11165	0.78	+0.5
2,479,250	+		LRK54_RS11165	0.78	-0.1
2,479,251	-		LRK54_RS11165	0.78	-1.2
2,479,251	-		LRK54_RS11165	0.78	-0.9
2,479,251	-		LRK54_RS11165	0.78	+0.1
2,479,251	-		LRK54_RS11165	0.78	-0.1
2,479,251	-		LRK54_RS11165	0.78	+0.9
2,479,251	-		LRK54_RS11165	0.78	+0.3
2,479,251	-		LRK54_RS11165	0.78	-0.0
2,479,251	-		LRK54_RS11165	0.78	-0.1
2,479,251	-		LRK54_RS11165	0.78	-0.5
2,479,251	-		LRK54_RS11165	0.78	-0.9
2,479,251	-		LRK54_RS11165	0.78	+0.7
2,479,251	-		LRK54_RS11165	0.78	+0.6
2,479,251	-		LRK54_RS11165	0.78	-0.2
2,479,251	-		LRK54_RS11165	0.78	-0.7
2,479,251	-		LRK54_RS11165	0.78	-0.1
2,479,251	-		LRK54_RS11165	0.78	-0.8
2,479,251	-		LRK54_RS11165	0.78	-0.3
2,479,251	-		LRK54_RS11165	0.78	+1.3
2,479,251	-		LRK54_RS11165	0.78	-0.4
2,479,251	-		LRK54_RS11165	0.78	+0.1
2,479,526	+				-0.5
2,479,526	+				-1.4
2,479,527	-				-0.4
2,479,527	-				-2.1
2,479,566	+				+0.0
2,479,566	+				-0.4
2,479,566	+				+0.9
2,479,566	+				-2.4
2,479,566	+				-0.7
2,479,566	+				+0.3
2,479,566	+				-0.5
2,479,566	+				-1.0
2,479,566	+				+0.7
2,479,566	+				+0.1
2,479,566	+				+1.1
2,479,567	-				-1.4
2,479,567	-				-0.4
2,479,567	-				-0.4
2,479,567	-				+1.8
2,479,667	+				-1.2
2,479,667	+				-0.3
2,479,667	+				-1.0
2,479,668	-				-2.2
2,479,668	-				-1.0
2,479,668	-				-1.1
2,479,668	-				+0.0
2,479,748	+				+0.7
2,479,749	-				-0.7
2,479,811	+				-1.7
2,479,811	+				-1.0
2,479,812	-				-2.3
2,479,812	-				-0.9
2,479,812	-				-0.9
2,479,812	-				-0.9
2,479,812	-				-0.6
2,479,812	-				-1.6
2,480,349	-		LRK54_RS11170	0.31	-0.9
2,480,462	-		LRK54_RS11170	0.36	-0.2
2,480,603	+		LRK54_RS11170	0.43	-0.2
2,480,603	+		LRK54_RS11170	0.43	-0.6
2,480,603	+		LRK54_RS11170	0.43	+0.0
2,480,727	-		LRK54_RS11170	0.48	-0.5
2,480,759	+		LRK54_RS11170	0.49	-1.1
2,480,760	-		LRK54_RS11170	0.49	-0.2
2,480,760	-		LRK54_RS11170	0.49	-1.6
2,480,873	+		LRK54_RS11170	0.54	-1.2
2,480,873	+		LRK54_RS11170	0.54	-0.7
2,480,873	+		LRK54_RS11170	0.54	+0.4
2,480,873	+		LRK54_RS11170	0.54	+0.7
2,480,874	-		LRK54_RS11170	0.54	-2.8
2,480,874	-		LRK54_RS11170	0.54	+0.8
2,480,967	-		LRK54_RS11170	0.58	-1.0
2,480,967	-		LRK54_RS11170	0.58	-0.3
2,481,155	+		LRK54_RS11170	0.67	+0.4
2,481,155	+		LRK54_RS11170	0.67	-1.2
2,481,155	+		LRK54_RS11170	0.67	-0.3
2,481,155	+		LRK54_RS11170	0.67	-2.0
2,481,167	+		LRK54_RS11170	0.67	+2.0
2,481,167	+		LRK54_RS11170	0.67	-1.2
2,481,167	+		LRK54_RS11170	0.67	-1.7
2,481,167	+		LRK54_RS11170	0.67	+0.2
2,481,168	-		LRK54_RS11170	0.67	-0.5
2,481,168	-		LRK54_RS11170	0.67	-1.9
2,481,168	-		LRK54_RS11170	0.67	-0.8
2,481,168	-		LRK54_RS11170	0.67	+1.4
2,481,305	+		LRK54_RS11170	0.73	-0.2
2,481,305	+		LRK54_RS11170	0.73	-1.1
2,481,306	-		LRK54_RS11170	0.73	-0.8
2,481,306	-		LRK54_RS11170	0.73	-1.0
2,481,323	+		LRK54_RS11170	0.74	-1.3
2,481,323	+		LRK54_RS11170	0.74	-1.2
2,481,324	-		LRK54_RS11170	0.74	-1.6
2,481,410	+		LRK54_RS11170	0.78	-1.3
2,481,410	+		LRK54_RS11170	0.78	-1.0
2,481,410	+		LRK54_RS11170	0.78	-0.5
2,481,410	+		LRK54_RS11170	0.78	+0.0
2,481,410	+		LRK54_RS11170	0.78	-0.9
2,481,410	+		LRK54_RS11170	0.78	+0.2
2,481,410	+		LRK54_RS11170	0.78	-1.4
2,481,411	-		LRK54_RS11170	0.78	-1.1
2,481,411	-		LRK54_RS11170	0.78	-0.2
2,481,411	-		LRK54_RS11170	0.78	-1.6
2,481,411	-		LRK54_RS11170	0.78	-0.2
2,481,746	+				-0.5
2,481,746	+				+0.7
2,481,746	+				-1.9
2,481,747	-				-0.2
2,481,747	-				-1.1
2,481,747	-				-1.5
2,481,747	-				-1.6
2,481,747	-				-0.8
2,481,747	-				-0.2
2,481,747	-				-1.0
2,482,008	+				+0.3
2,482,009	-				-0.6
2,482,281	+				-0.2
2,482,281	+				-1.0
2,482,282	-				-1.0
2,482,282	-				-0.2
2,482,282	-				-0.6
2,482,282	-				-1.0
2,482,282	-				-0.5
2,482,282	-				-1.1
2,482,455	+		LRK54_RS11175	0.13	-1.0
2,482,455	+		LRK54_RS11175	0.13	+0.0
2,482,455	+		LRK54_RS11175	0.13	+0.2
2,482,455	+		LRK54_RS11175	0.13	-0.9
2,482,455	+		LRK54_RS11175	0.13	-1.1
2,482,456	-		LRK54_RS11175	0.13	-1.0
2,482,456	-		LRK54_RS11175	0.13	-1.5
2,482,456	-		LRK54_RS11175	0.13	+0.4
2,482,456	-		LRK54_RS11175	0.13	-1.5
2,482,548	+		LRK54_RS11175	0.17	-1.2
2,482,549	-		LRK54_RS11175	0.17	-1.8
2,482,549	-		LRK54_RS11175	0.17	-0.5
2,482,549	-		LRK54_RS11175	0.17	-1.2
2,482,549	-		LRK54_RS11175	0.17	-0.8
2,482,549	-		LRK54_RS11175	0.17	-0.7
2,482,720	-		LRK54_RS11175	0.23	-1.6
2,482,720	-		LRK54_RS11175	0.23	+1.0