Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10500

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS10495 and LRK54_RS10500 are separated by 62 nucleotidesLRK54_RS10500 and LRK54_RS10505 are separated by 86 nucleotidesLRK54_RS10505 and LRK54_RS10510 are separated by 147 nucleotides LRK54_RS10495: LRK54_RS10495 - type I restriction endonuclease subunit R, at 2,316,117 to 2,319,353 _RS10495 LRK54_RS10500: LRK54_RS10500 - glycerophosphodiester phosphodiesterase, at 2,319,416 to 2,319,580 _RS10500 LRK54_RS10505: LRK54_RS10505 - hypothetical protein, at 2,319,667 to 2,320,251 _RS10505 LRK54_RS10510: LRK54_RS10510 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 2,320,399 to 2,321,223 _RS10510 Position (kb) 2319 2320Strain fitness (log2 ratio) -2 -1 0 1 2at 2318.515 kb on - strand, within LRK54_RS10495at 2318.515 kb on - strand, within LRK54_RS10495at 2318.515 kb on - strand, within LRK54_RS10495at 2318.515 kb on - strand, within LRK54_RS10495at 2318.538 kb on + strand, within LRK54_RS10495at 2318.538 kb on + strand, within LRK54_RS10495at 2318.538 kb on + strand, within LRK54_RS10495at 2318.538 kb on + strand, within LRK54_RS10495at 2318.539 kb on - strand, within LRK54_RS10495at 2318.601 kb on + strand, within LRK54_RS10495at 2318.601 kb on + strand, within LRK54_RS10495at 2318.601 kb on + strand, within LRK54_RS10495at 2318.602 kb on - strand, within LRK54_RS10495at 2318.742 kb on + strand, within LRK54_RS10495at 2318.742 kb on + strand, within LRK54_RS10495at 2318.742 kb on + strand, within LRK54_RS10495at 2318.826 kb on + strand, within LRK54_RS10495at 2318.826 kb on + strand, within LRK54_RS10495at 2318.826 kb on + strand, within LRK54_RS10495at 2318.826 kb on + strand, within LRK54_RS10495at 2318.826 kb on + strand, within LRK54_RS10495at 2318.826 kb on + strand, within LRK54_RS10495at 2318.827 kb on - strand, within LRK54_RS10495at 2318.827 kb on - strand, within LRK54_RS10495at 2318.827 kb on - strand, within LRK54_RS10495at 2318.827 kb on - strand, within LRK54_RS10495at 2318.827 kb on - strand, within LRK54_RS10495at 2318.827 kb on - strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.946 kb on + strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.947 kb on - strand, within LRK54_RS10495at 2318.976 kb on + strand, within LRK54_RS10495at 2318.976 kb on + strand, within LRK54_RS10495at 2318.976 kb on + strand, within LRK54_RS10495at 2318.977 kb on - strand, within LRK54_RS10495at 2318.977 kb on - strand, within LRK54_RS10495at 2318.977 kb on - strand, within LRK54_RS10495at 2318.977 kb on - strand, within LRK54_RS10495at 2318.977 kb on - strand, within LRK54_RS10495at 2318.977 kb on - strand, within LRK54_RS10495at 2318.977 kb on - strand, within LRK54_RS10495at 2318.977 kb on - strand, within LRK54_RS10495at 2319.069 kb on + strandat 2319.069 kb on + strandat 2319.069 kb on + strandat 2319.069 kb on + strandat 2319.069 kb on + strandat 2319.070 kb on - strandat 2319.070 kb on - strandat 2319.264 kb on + strandat 2319.265 kb on - strandat 2319.265 kb on - strandat 2319.265 kb on - strandat 2319.265 kb on - strandat 2319.265 kb on - strandat 2319.265 kb on - strandat 2319.321 kb on + strandat 2319.321 kb on + strandat 2319.321 kb on + strandat 2319.321 kb on + strandat 2319.321 kb on + strandat 2319.321 kb on + strandat 2319.322 kb on - strandat 2319.322 kb on - strandat 2319.322 kb on - strandat 2319.351 kb on + strandat 2319.351 kb on + strandat 2319.351 kb on + strandat 2319.352 kb on - strandat 2319.352 kb on - strandat 2319.352 kb on - strandat 2319.352 kb on - strandat 2319.352 kb on - strandat 2319.352 kb on - strandat 2319.352 kb on - strandat 2319.352 kb on - strandat 2319.396 kb on + strandat 2319.396 kb on + strandat 2319.397 kb on - strandat 2319.521 kb on + strand, within LRK54_RS10500at 2319.521 kb on + strand, within LRK54_RS10500at 2319.521 kb on + strand, within LRK54_RS10500at 2319.521 kb on + strand, within LRK54_RS10500at 2319.521 kb on + strand, within LRK54_RS10500at 2319.521 kb on + strand, within LRK54_RS10500at 2319.521 kb on + strand, within LRK54_RS10500at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.734 kb on + strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.735 kb on - strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.848 kb on + strand, within LRK54_RS10505at 2319.849 kb on - strand, within LRK54_RS10505at 2319.849 kb on - strand, within LRK54_RS10505at 2319.849 kb on - strand, within LRK54_RS10505at 2319.849 kb on - strand, within LRK54_RS10505at 2319.849 kb on - strand, within LRK54_RS10505at 2319.849 kb on - strand, within LRK54_RS10505at 2319.849 kb on - strand, within LRK54_RS10505at 2319.908 kb on + strand, within LRK54_RS10505at 2319.909 kb on - strand, within LRK54_RS10505at 2319.952 kb on + strand, within LRK54_RS10505at 2319.953 kb on - strand, within LRK54_RS10505at 2319.953 kb on - strand, within LRK54_RS10505at 2319.953 kb on - strand, within LRK54_RS10505at 2319.953 kb on - strand, within LRK54_RS10505at 2320.220 kb on + strandat 2320.220 kb on + strandat 2320.220 kb on + strandat 2320.221 kb on - strandat 2320.484 kb on + strand, within LRK54_RS10510at 2320.484 kb on + strand, within LRK54_RS10510at 2320.485 kb on - strand, within LRK54_RS10510at 2320.485 kb on - strand, within LRK54_RS10510at 2320.485 kb on - strand, within LRK54_RS10510at 2320.485 kb on - strand, within LRK54_RS10510

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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2,318,515 - LRK54_RS10495 0.74 -0.2
2,318,515 - LRK54_RS10495 0.74 -1.6
2,318,515 - LRK54_RS10495 0.74 +0.7
2,318,515 - LRK54_RS10495 0.74 -0.0
2,318,538 + LRK54_RS10495 0.75 -1.4
2,318,538 + LRK54_RS10495 0.75 -1.3
2,318,538 + LRK54_RS10495 0.75 +0.4
2,318,538 + LRK54_RS10495 0.75 +0.4
2,318,539 - LRK54_RS10495 0.75 -0.4
2,318,601 + LRK54_RS10495 0.77 +1.0
2,318,601 + LRK54_RS10495 0.77 -0.7
2,318,601 + LRK54_RS10495 0.77 -1.6
2,318,602 - LRK54_RS10495 0.77 -1.2
2,318,742 + LRK54_RS10495 0.81 +0.8
2,318,742 + LRK54_RS10495 0.81 -1.6
2,318,742 + LRK54_RS10495 0.81 -0.1
2,318,826 + LRK54_RS10495 0.84 -1.0
2,318,826 + LRK54_RS10495 0.84 -0.6
2,318,826 + LRK54_RS10495 0.84 +0.6
2,318,826 + LRK54_RS10495 0.84 -0.0
2,318,826 + LRK54_RS10495 0.84 +0.1
2,318,826 + LRK54_RS10495 0.84 -1.3
2,318,827 - LRK54_RS10495 0.84 -0.6
2,318,827 - LRK54_RS10495 0.84 -0.1
2,318,827 - LRK54_RS10495 0.84 -0.7
2,318,827 - LRK54_RS10495 0.84 -0.6
2,318,827 - LRK54_RS10495 0.84 +0.7
2,318,827 - LRK54_RS10495 0.84 +0.4
2,318,946 + LRK54_RS10495 0.87 -0.1
2,318,946 + LRK54_RS10495 0.87 +0.2
2,318,946 + LRK54_RS10495 0.87 -0.4
2,318,946 + LRK54_RS10495 0.87 +0.8
2,318,946 + LRK54_RS10495 0.87 +0.4
2,318,946 + LRK54_RS10495 0.87 -0.7
2,318,946 + LRK54_RS10495 0.87 +1.1
2,318,946 + LRK54_RS10495 0.87 -0.9
2,318,946 + LRK54_RS10495 0.87 +0.6
2,318,946 + LRK54_RS10495 0.87 -0.9
2,318,946 + LRK54_RS10495 0.87 +0.6
2,318,947 - LRK54_RS10495 0.87 +0.0
2,318,947 - LRK54_RS10495 0.87 -0.4
2,318,947 - LRK54_RS10495 0.87 -0.6
2,318,947 - LRK54_RS10495 0.87 +1.7
2,318,947 - LRK54_RS10495 0.87 -1.0
2,318,947 - LRK54_RS10495 0.87 -0.4
2,318,947 - LRK54_RS10495 0.87 -0.3
2,318,947 - LRK54_RS10495 0.87 -1.1
2,318,947 - LRK54_RS10495 0.87 -1.3
2,318,947 - LRK54_RS10495 0.87 -0.7
2,318,947 - LRK54_RS10495 0.87 -0.7
2,318,947 - LRK54_RS10495 0.87 -0.3
2,318,947 - LRK54_RS10495 0.87 -1.4
2,318,947 - LRK54_RS10495 0.87 -0.8
2,318,976 + LRK54_RS10495 0.88 -0.4
2,318,976 + LRK54_RS10495 0.88 -0.9
2,318,976 + LRK54_RS10495 0.88 -0.1
2,318,977 - LRK54_RS10495 0.88 -0.9
2,318,977 - LRK54_RS10495 0.88 +0.4
2,318,977 - LRK54_RS10495 0.88 -1.2
2,318,977 - LRK54_RS10495 0.88 +0.3
2,318,977 - LRK54_RS10495 0.88 -0.2
2,318,977 - LRK54_RS10495 0.88 +0.5
2,318,977 - LRK54_RS10495 0.88 -1.4
2,318,977 - LRK54_RS10495 0.88 +0.1
2,319,069 + +0.5
2,319,069 + -0.1
2,319,069 + -0.7
2,319,069 + +0.5
2,319,069 + -0.5
2,319,070 - -0.5
2,319,070 - -0.4
2,319,264 + -0.7
2,319,265 - -0.4
2,319,265 - -0.9
2,319,265 - -0.6
2,319,265 - -0.8
2,319,265 - -0.8
2,319,265 - -0.8
2,319,321 + -0.2
2,319,321 + -0.1
2,319,321 + -1.1
2,319,321 + -1.5
2,319,321 + -0.7
2,319,321 + -0.3
2,319,322 - -1.3
2,319,322 - -0.2
2,319,322 - -0.7
2,319,351 + -0.9
2,319,351 + -0.7
2,319,351 + +0.6
2,319,352 - -0.2
2,319,352 - -0.3
2,319,352 - -0.5
2,319,352 - -0.9
2,319,352 - -0.0
2,319,352 - +2.6
2,319,352 - -0.2
2,319,352 - -0.5
2,319,396 + -1.0
2,319,396 + -0.8
2,319,397 - +0.8
2,319,521 + LRK54_RS10500 0.64 -0.9
2,319,521 + LRK54_RS10500 0.64 -1.1
2,319,521 + LRK54_RS10500 0.64 -0.1
2,319,521 + LRK54_RS10500 0.64 -1.0
2,319,521 + LRK54_RS10500 0.64 -0.9
2,319,521 + LRK54_RS10500 0.64 -0.4
2,319,521 + LRK54_RS10500 0.64 -1.1
2,319,734 + LRK54_RS10505 0.11 +0.7
2,319,734 + LRK54_RS10505 0.11 +0.0
2,319,734 + LRK54_RS10505 0.11 +0.7
2,319,734 + LRK54_RS10505 0.11 -1.6
2,319,734 + LRK54_RS10505 0.11 +0.3
2,319,734 + LRK54_RS10505 0.11 -1.9
2,319,734 + LRK54_RS10505 0.11 -0.7
2,319,734 + LRK54_RS10505 0.11 -0.2
2,319,734 + LRK54_RS10505 0.11 +0.3
2,319,734 + LRK54_RS10505 0.11 +0.5
2,319,734 + LRK54_RS10505 0.11 +1.3
2,319,734 + LRK54_RS10505 0.11 -0.4
2,319,734 + LRK54_RS10505 0.11 -0.6
2,319,734 + LRK54_RS10505 0.11 -1.1
2,319,735 - LRK54_RS10505 0.12 -0.1
2,319,735 - LRK54_RS10505 0.12 -0.2
2,319,735 - LRK54_RS10505 0.12 +0.0
2,319,735 - LRK54_RS10505 0.12 +0.8
2,319,735 - LRK54_RS10505 0.12 -0.9
2,319,735 - LRK54_RS10505 0.12 +1.2
2,319,735 - LRK54_RS10505 0.12 +0.9
2,319,735 - LRK54_RS10505 0.12 +0.0
2,319,735 - LRK54_RS10505 0.12 +0.1
2,319,735 - LRK54_RS10505 0.12 +0.3
2,319,735 - LRK54_RS10505 0.12 -0.3
2,319,735 - LRK54_RS10505 0.12 +0.3
2,319,735 - LRK54_RS10505 0.12 -0.2
2,319,735 - LRK54_RS10505 0.12 +0.0
2,319,848 + LRK54_RS10505 0.31 +0.7
2,319,848 + LRK54_RS10505 0.31 +0.4
2,319,848 + LRK54_RS10505 0.31 -0.6
2,319,848 + LRK54_RS10505 0.31 -1.8
2,319,848 + LRK54_RS10505 0.31 -0.5
2,319,848 + LRK54_RS10505 0.31 -0.2
2,319,848 + LRK54_RS10505 0.31 -1.6
2,319,848 + LRK54_RS10505 0.31 -1.2
2,319,848 + LRK54_RS10505 0.31 +0.4
2,319,848 + LRK54_RS10505 0.31 -1.1
2,319,848 + LRK54_RS10505 0.31 -0.4
2,319,849 - LRK54_RS10505 0.31 -0.2
2,319,849 - LRK54_RS10505 0.31 +0.1
2,319,849 - LRK54_RS10505 0.31 +0.6
2,319,849 - LRK54_RS10505 0.31 -0.9
2,319,849 - LRK54_RS10505 0.31 +0.6
2,319,849 - LRK54_RS10505 0.31 -0.1
2,319,849 - LRK54_RS10505 0.31 -0.7
2,319,908 + LRK54_RS10505 0.41 +0.8
2,319,909 - LRK54_RS10505 0.41 +0.8
2,319,952 + LRK54_RS10505 0.49 -0.6
2,319,953 - LRK54_RS10505 0.49 -2.0
2,319,953 - LRK54_RS10505 0.49 -0.0
2,319,953 - LRK54_RS10505 0.49 +0.0
2,319,953 - LRK54_RS10505 0.49 -0.4
2,320,220 + -0.4
2,320,220 + -1.2
2,320,220 + -0.3
2,320,221 - +1.6
2,320,484 + LRK54_RS10510 0.10 -1.1
2,320,484 + LRK54_RS10510 0.10 +1.5
2,320,485 - LRK54_RS10510 0.10 -1.6
2,320,485 - LRK54_RS10510 0.10 -0.1
2,320,485 - LRK54_RS10510 0.10 -1.4
2,320,485 - LRK54_RS10510 0.10 -1.0

Or see this region's nucleotide sequence