Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08305

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,811,077	+		LRK54_RS08300	0.76	-0.0
1,811,077	+		LRK54_RS08300	0.76	+0.3
1,811,078	-		LRK54_RS08300	0.76	-0.2
1,811,083	+		LRK54_RS08300	0.77	-1.2
1,811,083	+		LRK54_RS08300	0.77	-0.1
1,811,083	+		LRK54_RS08300	0.77	-0.2
1,811,083	+		LRK54_RS08300	0.77	+0.8
1,811,083	+		LRK54_RS08300	0.77	-0.0
1,811,083	+		LRK54_RS08300	0.77	+0.2
1,811,083	+		LRK54_RS08300	0.77	-0.5
1,811,083	+		LRK54_RS08300	0.77	+0.5
1,811,083	+		LRK54_RS08300	0.77	+0.3
1,811,083	+		LRK54_RS08300	0.77	-0.5
1,811,083	+		LRK54_RS08300	0.77	+0.0
1,811,083	+		LRK54_RS08300	0.77	-0.6
1,811,083	+		LRK54_RS08300	0.77	-0.5
1,811,083	+		LRK54_RS08300	0.77	+0.0
1,811,083	+		LRK54_RS08300	0.77	+0.0
1,811,084	-		LRK54_RS08300	0.77	-0.1
1,811,084	-		LRK54_RS08300	0.77	+0.0
1,811,084	-		LRK54_RS08300	0.77	-1.4
1,811,084	-		LRK54_RS08300	0.77	+1.6
1,811,084	-		LRK54_RS08300	0.77	-0.6
1,811,084	-		LRK54_RS08300	0.77	-0.7
1,811,084	-		LRK54_RS08300	0.77	+0.1
1,811,084	-		LRK54_RS08300	0.77	-0.8
1,811,084	-		LRK54_RS08300	0.77	-0.6
1,811,084	-		LRK54_RS08300	0.77	-0.3
1,811,084	-		LRK54_RS08300	0.77	-0.4
1,811,084	-		LRK54_RS08300	0.77	-1.2
1,811,084	-		LRK54_RS08300	0.77	-0.2
1,811,084	-		LRK54_RS08300	0.77	-1.0
1,811,084	-		LRK54_RS08300	0.77	+0.3
1,811,084	-		LRK54_RS08300	0.77	-1.3
1,811,084	-		LRK54_RS08300	0.77	-0.4
1,811,084	-		LRK54_RS08300	0.77	+0.1
1,811,084	-		LRK54_RS08300	0.77	-0.2
1,811,084	-		LRK54_RS08300	0.77	-0.3
1,811,084	-		LRK54_RS08300	0.77	-0.0
1,811,084	-		LRK54_RS08300	0.77	-0.8
1,811,084	-		LRK54_RS08300	0.77	+0.5
1,811,084	-		LRK54_RS08300	0.77	+0.3
1,811,084	-		LRK54_RS08300	0.77	-1.3
1,811,084	-		LRK54_RS08300	0.77	-0.4
1,811,084	-		LRK54_RS08300	0.77	+1.0
1,811,084	-		LRK54_RS08300	0.77	+0.3
1,811,084	-		LRK54_RS08300	0.77	-0.6
1,811,084	-		LRK54_RS08300	0.77	+0.3
1,811,084	-		LRK54_RS08300	0.77	-0.5
1,811,084	-		LRK54_RS08300	0.77	-0.5
1,811,084	-		LRK54_RS08300	0.77	-0.4
1,811,084	-		LRK54_RS08300	0.77	-0.6
1,811,084	-		LRK54_RS08300	0.77	-0.3
1,811,084	-		LRK54_RS08300	0.77	-1.1
1,811,084	-		LRK54_RS08300	0.77	-1.4
1,811,084	-		LRK54_RS08300	0.77	-0.3
1,811,084	-		LRK54_RS08300	0.77	+0.5
1,811,084	-		LRK54_RS08300	0.77	-0.0
1,811,084	-		LRK54_RS08300	0.77	-0.3
1,811,084	-		LRK54_RS08300	0.77	-0.2
1,811,272	+		LRK54_RS08300	0.82	-0.4
1,811,272	+		LRK54_RS08300	0.82	+0.2
1,811,272	+		LRK54_RS08300	0.82	-0.2
1,811,273	-		LRK54_RS08300	0.82	+0.7
1,811,273	-		LRK54_RS08300	0.82	-0.2
1,811,273	-		LRK54_RS08300	0.82	+0.1
1,811,273	-		LRK54_RS08300	0.82	+0.1
1,811,273	-		LRK54_RS08300	0.82	-0.1
1,811,273	-		LRK54_RS08300	0.82	+0.8
1,811,273	-		LRK54_RS08300	0.82	-0.1
1,811,273	-		LRK54_RS08300	0.82	-0.3
1,811,365	+		LRK54_RS08300	0.85	+0.0
1,811,365	+		LRK54_RS08300	0.85	-0.7
1,811,365	+		LRK54_RS08300	0.85	+0.6
1,811,365	+		LRK54_RS08300	0.85	-0.1
1,811,365	+		LRK54_RS08300	0.85	+0.7
1,811,365	+		LRK54_RS08300	0.85	-0.5
1,811,365	+		LRK54_RS08300	0.85	-1.2
1,811,365	+		LRK54_RS08300	0.85	+0.0
1,811,365	+		LRK54_RS08300	0.85	+0.7
1,811,365	+		LRK54_RS08300	0.85	-0.4
1,811,365	+		LRK54_RS08300	0.85	+1.8
1,811,365	+		LRK54_RS08300	0.85	-1.0
1,811,365	+		LRK54_RS08300	0.85	-0.3
1,811,365	+		LRK54_RS08300	0.85	+0.1
1,811,365	+		LRK54_RS08300	0.85	+0.5
1,811,365	+		LRK54_RS08300	0.85	+0.2
1,811,365	+		LRK54_RS08300	0.85	-0.1
1,811,365	+		LRK54_RS08300	0.85	+0.5
1,811,365	+		LRK54_RS08300	0.85	-0.6
1,811,365	+		LRK54_RS08300	0.85	+0.8
1,811,365	+		LRK54_RS08300	0.85	+0.0
1,811,365	+		LRK54_RS08300	0.85	-0.0
1,811,365	+		LRK54_RS08300	0.85	+0.1
1,811,366	-		LRK54_RS08300	0.85	-0.4
1,811,366	-		LRK54_RS08300	0.85	-0.1
1,811,366	-		LRK54_RS08300	0.85	+0.2
1,811,366	-		LRK54_RS08300	0.85	-1.7
1,811,366	-		LRK54_RS08300	0.85	-0.1
1,811,366	-		LRK54_RS08300	0.85	-0.1
1,811,366	-		LRK54_RS08300	0.85	+0.1
1,811,366	-		LRK54_RS08300	0.85	-1.3
1,811,366	-		LRK54_RS08300	0.85	-1.1
1,811,366	-		LRK54_RS08300	0.85	-0.3
1,811,366	-		LRK54_RS08300	0.85	-0.2
1,811,366	-		LRK54_RS08300	0.85	-0.9
1,811,366	-		LRK54_RS08300	0.85	-0.1
1,811,366	-		LRK54_RS08300	0.85	-0.1
1,811,366	-		LRK54_RS08300	0.85	-0.4
1,811,366	-		LRK54_RS08300	0.85	-0.0
1,811,383	+		LRK54_RS08300	0.85	+0.6
1,811,383	+		LRK54_RS08300	0.85	+0.4
1,811,383	+		LRK54_RS08300	0.85	-0.9
1,811,383	+		LRK54_RS08300	0.85	-0.1
1,811,384	-		LRK54_RS08300	0.85	-0.5
1,811,497	+		LRK54_RS08300	0.89	+0.3
1,811,497	+		LRK54_RS08300	0.89	-1.5
1,811,497	+		LRK54_RS08300	0.89	+0.6
1,811,497	+		LRK54_RS08300	0.89	+0.5
1,811,497	+		LRK54_RS08300	0.89	+0.8
1,811,497	+		LRK54_RS08300	0.89	-0.5
1,811,497	+		LRK54_RS08300	0.89	+0.4
1,811,497	+		LRK54_RS08300	0.89	+0.3
1,811,497	+		LRK54_RS08300	0.89	+0.1
1,811,497	+		LRK54_RS08300	0.89	-0.9
1,811,497	+		LRK54_RS08300	0.89	-0.6
1,811,497	+		LRK54_RS08300	0.89	+0.1
1,811,497	+		LRK54_RS08300	0.89	+0.1
1,811,498	-		LRK54_RS08300	0.89	-0.2
1,811,498	-		LRK54_RS08300	0.89	-1.0
1,811,498	-		LRK54_RS08300	0.89	-0.3
1,811,498	-		LRK54_RS08300	0.89	+0.9
1,811,498	-		LRK54_RS08300	0.89	+0.7
1,811,498	-		LRK54_RS08300	0.89	-0.5
1,811,498	-		LRK54_RS08300	0.89	-0.0
1,811,498	-		LRK54_RS08300	0.89	-0.0
1,811,498	-		LRK54_RS08300	0.89	-0.7
1,811,498	-		LRK54_RS08300	0.89	-0.5
1,811,548	+				+0.1
1,811,548	+				+0.1
1,811,548	+				+0.6
1,811,548	+				-2.0
1,811,548	+				+0.0
1,811,548	+				+0.4
1,811,548	+				+1.4
1,811,548	+				+0.4
1,811,548	+				+1.2
1,811,548	+				-0.3
1,811,549	-				-1.7
1,811,549	-				+0.4
1,811,549	-				-0.3
1,811,549	-				+1.1
1,811,549	-				+0.1
1,811,549	-				-0.5
1,811,549	-				+0.5
1,811,549	-				+0.1
1,811,561	+				+0.2
1,811,562	-				-0.4
1,811,590	+				+2.1
1,811,590	+				+0.3
1,811,590	+				+0.2
1,811,590	+				-1.0
1,811,590	+				-0.6
1,811,590	+				-0.7
1,811,590	+				-0.3
1,811,590	+				-0.8
1,811,590	+				-0.2
1,811,590	+				-1.1
1,811,591	-				-0.2
1,811,591	-				+0.4
1,811,591	-				+0.2
1,811,591	-				+0.6
1,811,591	-				-0.4
1,811,591	-				-0.3
1,811,591	-				+0.2
1,811,591	-				+0.1
1,811,591	-				+0.6
1,811,591	-				-0.7
1,811,629	+				-0.4
1,811,629	+				-0.7
1,811,630	-				-1.4
1,811,630	-				-0.5
1,811,630	-				-0.5
1,811,832	+				-0.1
1,811,832	+				-0.4
1,811,832	+				-0.4
1,811,832	+				-1.5
1,811,832	+				+1.3
1,811,832	+				+1.2
1,811,832	+				-0.2
1,811,832	+				+0.6
1,811,832	+				+0.3
1,811,832	+				+0.5
1,811,832	+				-0.8
1,811,832	+				-0.1
1,811,832	+				-0.2
1,811,832	+				+0.9
1,811,832	+				+0.1
1,811,833	-				+0.2
1,811,833	-				+0.2
1,811,833	-				+0.0
1,811,833	-				+0.3
1,811,833	-				-0.2
1,811,833	-				-0.1
1,811,833	-				-0.0
1,811,833	-				-1.0
1,811,833	-				+0.2
1,811,833	-				+0.8
1,811,833	-				+0.1
1,811,833	-				-0.0
1,811,833	-				+0.2
1,811,833	-				+0.9
1,811,833	-				-0.2
1,811,833	-				+0.3
1,811,833	-				-1.5
1,811,833	-				-1.3
1,811,833	-				-1.5
1,811,833	-				-0.3
1,811,833	-				+0.0
1,811,833	-				+0.2
1,811,833	-				-0.8
1,812,023	+				-1.8
1,812,023	+				-1.5
1,812,023	+				-2.3
1,812,023	+				-0.7
1,812,023	+				-1.2
1,812,023	+				-0.1
1,812,023	+				+0.1
1,812,023	+				-0.4
1,812,023	+				-1.8
1,812,023	+				-1.5
1,812,023	+				-0.4
1,812,023	+				-1.0
1,812,023	+				+0.3
1,812,023	+				-1.5
1,812,023	+				+1.2
1,812,023	+				-1.0
1,812,024	-				+0.6
1,812,024	-				-0.6
1,812,024	-				-1.2
1,812,024	-				-0.9
1,812,024	-				+0.1
1,812,024	-				-1.4
1,812,024	-				-1.0
1,812,024	-				-1.1
1,812,035	+				+0.2
1,812,035	+				-0.3
1,812,035	+				-1.6
1,812,035	+				-1.8
1,812,035	+				-0.9
1,812,035	+				-0.7
1,812,035	+				+0.1
1,812,035	+				-0.5
1,812,035	+				-1.1
1,812,035	+				+0.2
1,812,036	-				-0.7
1,812,036	-				-2.8
1,812,036	-				-0.7
1,812,036	-				+0.3
1,812,036	-				-0.6
1,812,036	-				+0.5
1,812,036	-				+0.7
1,812,036	-				-1.3
1,812,036	-				-1.2
1,812,036	-				+0.4
1,812,219	-		LRK54_RS08305	0.24	-0.1
1,812,230	+		LRK54_RS08305	0.25	-0.5
1,812,230	+		LRK54_RS08305	0.25	-1.3
1,812,230	+		LRK54_RS08305	0.25	-1.3
1,812,230	+		LRK54_RS08305	0.25	-1.7
1,812,231	-		LRK54_RS08305	0.25	-1.9
1,812,231	-		LRK54_RS08305	0.25	-0.9
1,812,231	-		LRK54_RS08305	0.25	-1.1
1,812,231	-		LRK54_RS08305	0.25	-1.1
1,812,231	-		LRK54_RS08305	0.25	-0.6
1,812,243	+		LRK54_RS08305	0.27	-0.5
1,812,243	+		LRK54_RS08305	0.27	-0.4
1,812,243	+		LRK54_RS08305	0.27	+0.1
1,812,243	+		LRK54_RS08305	0.27	-0.3
1,812,243	+		LRK54_RS08305	0.27	-1.1
1,812,244	-		LRK54_RS08305	0.27	-0.5
1,812,244	-		LRK54_RS08305	0.27	-1.7
1,812,244	-		LRK54_RS08305	0.27	-0.9
1,812,244	-		LRK54_RS08305	0.27	-1.2
1,812,244	-		LRK54_RS08305	0.27	-0.6
1,812,244	-		LRK54_RS08305	0.27	-1.5
1,812,244	-		LRK54_RS08305	0.27	-0.9
1,812,244	-		LRK54_RS08305	0.27	-1.1
1,812,255	+		LRK54_RS08305	0.28	-1.3
1,812,320	+		LRK54_RS08305	0.34	+0.2
1,812,320	+		LRK54_RS08305	0.34	-0.7
1,812,320	+		LRK54_RS08305	0.34	-0.3
1,812,320	+		LRK54_RS08305	0.34	-0.2
1,812,321	-		LRK54_RS08305	0.34	-2.9
1,812,321	-		LRK54_RS08305	0.34	-0.3
1,812,321	-		LRK54_RS08305	0.34	-1.3
1,812,321	-		LRK54_RS08305	0.34	-2.9
1,812,321	-		LRK54_RS08305	0.34	-0.7
1,812,321	-		LRK54_RS08305	0.34	-0.6
1,812,383	+		LRK54_RS08305	0.40	-0.5
1,812,383	+		LRK54_RS08305	0.40	-2.0
1,812,383	+		LRK54_RS08305	0.40	-0.4
1,812,383	+		LRK54_RS08305	0.40	-0.3
1,812,383	+		LRK54_RS08305	0.40	-2.5
1,812,383	+		LRK54_RS08305	0.40	-2.2
1,812,383	+		LRK54_RS08305	0.40	-1.4
1,812,383	+		LRK54_RS08305	0.40	-1.4
1,812,383	+		LRK54_RS08305	0.40	-1.1
1,812,383	+		LRK54_RS08305	0.40	-1.5
1,812,383	+		LRK54_RS08305	0.40	-0.7
1,812,383	+		LRK54_RS08305	0.40	-0.2
1,812,384	-		LRK54_RS08305	0.40	-1.1
1,812,384	-		LRK54_RS08305	0.40	-1.2
1,812,384	-		LRK54_RS08305	0.40	-1.0
1,812,384	-		LRK54_RS08305	0.40	-1.1
1,812,384	-		LRK54_RS08305	0.40	-0.3
1,812,384	-		LRK54_RS08305	0.40	+0.2
1,812,384	-		LRK54_RS08305	0.40	-0.9
1,812,384	-		LRK54_RS08305	0.40	-2.2
1,812,384	-		LRK54_RS08305	0.40	-1.7
1,812,384	-		LRK54_RS08305	0.40	+1.0
1,812,392	+		LRK54_RS08305	0.41	-0.8
1,812,392	+		LRK54_RS08305	0.41	-1.3
1,812,392	+		LRK54_RS08305	0.41	-2.1
1,812,392	+		LRK54_RS08305	0.41	+1.1
1,812,392	+		LRK54_RS08305	0.41	-0.6
1,812,392	+		LRK54_RS08305	0.41	-0.5
1,812,392	+		LRK54_RS08305	0.41	-2.2
1,812,392	+		LRK54_RS08305	0.41	-0.9
1,812,393	-		LRK54_RS08305	0.41	-0.3
1,812,393	-		LRK54_RS08305	0.41	-1.0
1,812,393	-		LRK54_RS08305	0.41	+0.2
1,812,393	-		LRK54_RS08305	0.41	-0.6
1,812,467	+		LRK54_RS08305	0.49	-1.7
1,812,467	+		LRK54_RS08305	0.49	+1.6
1,812,467	+		LRK54_RS08305	0.49	-1.3
1,812,467	+		LRK54_RS08305	0.49	-0.1
1,812,467	+		LRK54_RS08305	0.49	-1.6
1,812,467	+		LRK54_RS08305	0.49	-1.1
1,812,467	+		LRK54_RS08305	0.49	-1.7
1,812,467	+		LRK54_RS08305	0.49	-1.1
1,812,467	+		LRK54_RS08305	0.49	-1.1
1,812,467	+		LRK54_RS08305	0.49	-0.7
1,812,467	+		LRK54_RS08305	0.49	-1.9
1,812,467	+		LRK54_RS08305	0.49	+0.1
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1,812,467	+		LRK54_RS08305	0.49	-0.5
1,812,467	+		LRK54_RS08305	0.49	-0.3
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1,812,468	-		LRK54_RS08305	0.49	-1.4
1,812,468	-		LRK54_RS08305	0.49	-2.0
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1,812,468	-		LRK54_RS08305	0.49	-0.3
1,812,468	-		LRK54_RS08305	0.49	-1.7
1,812,468	-		LRK54_RS08305	0.49	-0.2
1,812,468	-		LRK54_RS08305	0.49	-1.6
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1,812,725	+		LRK54_RS08305	0.74	-0.4
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1,812,725	+		LRK54_RS08305	0.74	-1.7
1,812,725	+		LRK54_RS08305	0.74	-1.1
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1,812,725	+		LRK54_RS08305	0.74	+1.2
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1,812,725	+		LRK54_RS08305	0.74	-0.7
1,812,725	+		LRK54_RS08305	0.74	-1.1
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1,812,725	+		LRK54_RS08305	0.74	-0.3
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1,812,725	+		LRK54_RS08305	0.74	-1.6
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1,812,725	+		LRK54_RS08305	0.74	-2.1
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1,812,725	+		LRK54_RS08305	0.74	-1.1
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1,812,725	+		LRK54_RS08305	0.74	+1.1
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1,812,726	-		LRK54_RS08305	0.74	-2.1
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1,812,726	-		LRK54_RS08305	0.74	+0.3
1,812,726	-		LRK54_RS08305	0.74	-2.9
1,812,806	+		LRK54_RS08305	0.82	-1.3
1,812,806	+		LRK54_RS08305	0.82	-1.1
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1,812,807	-		LRK54_RS08305	0.82	+0.1
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1,812,807	-		LRK54_RS08305	0.82	-0.8
1,812,807	-		LRK54_RS08305	0.82	-2.1
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1,812,807	-		LRK54_RS08305	0.82	-1.1
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1,813,282	+		LRK54_RS08310	0.36	-0.4
1,813,283	-		LRK54_RS08310	0.37	-2.6
1,813,733	-				-1.1
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1,813,733	-				-1.3
1,813,775	+				-0.9
1,813,775	+				-0.4
1,813,775	+				-2.5
1,813,776	-				-1.7
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1,813,806	-				+0.1
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1,813,806	-				+0.3
1,813,806	-				+1.1
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