Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07980

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,747,870	-		LRK54_RS07975	0.79	-0.5
1,747,881	+		LRK54_RS07975	0.80	+0.1
1,747,884	+		LRK54_RS07975	0.80	+0.4
1,747,884	+		LRK54_RS07975	0.80	-1.2
1,747,884	+		LRK54_RS07975	0.80	-0.8
1,747,885	-		LRK54_RS07975	0.80	-0.4
1,747,885	-		LRK54_RS07975	0.80	+0.3
1,747,885	-		LRK54_RS07975	0.80	+0.7
1,748,095	-		LRK54_RS07975	0.85	-0.8
1,748,095	-		LRK54_RS07975	0.85	+0.2
1,748,095	-		LRK54_RS07975	0.85	-0.0
1,748,095	-		LRK54_RS07975	0.85	-0.2
1,748,139	+		LRK54_RS07975	0.86	-0.3
1,748,139	+		LRK54_RS07975	0.86	-0.0
1,748,279	+		LRK54_RS07975	0.90	-1.3
1,748,280	+		LRK54_RS07975	0.90	+0.2
1,748,280	+		LRK54_RS07975	0.90	-0.4
1,748,280	+		LRK54_RS07975	0.90	+0.2
1,748,280	+		LRK54_RS07975	0.90	+0.2
1,748,280	+		LRK54_RS07975	0.90	-0.4
1,748,280	+		LRK54_RS07975	0.90	-0.1
1,748,280	+		LRK54_RS07975	0.90	-0.6
1,748,280	+		LRK54_RS07975	0.90	-0.2
1,748,280	+		LRK54_RS07975	0.90	-0.3
1,748,280	+		LRK54_RS07975	0.90	+0.0
1,748,280	+		LRK54_RS07975	0.90	-0.1
1,748,280	+		LRK54_RS07975	0.90	-0.8
1,748,280	+		LRK54_RS07975	0.90	+0.1
1,748,280	+		LRK54_RS07975	0.90	-0.8
1,748,280	+		LRK54_RS07975	0.90	-1.6
1,748,280	+		LRK54_RS07975	0.90	+0.5
1,748,280	+		LRK54_RS07975	0.90	+1.2
1,748,280	+		LRK54_RS07975	0.90	-0.3
1,748,280	+		LRK54_RS07975	0.90	+0.9
1,748,280	+		LRK54_RS07975	0.90	+0.2
1,748,280	+		LRK54_RS07975	0.90	-0.2
1,748,280	+		LRK54_RS07975	0.90	-0.3
1,748,280	+		LRK54_RS07975	0.90	-0.2
1,748,280	+		LRK54_RS07975	0.90	-1.2
1,748,280	+		LRK54_RS07975	0.90	-0.1
1,748,280	+		LRK54_RS07975	0.90	+0.6
1,748,281	-		LRK54_RS07975	0.90	+0.1
1,748,281	-		LRK54_RS07975	0.90	-0.4
1,748,281	-		LRK54_RS07975	0.90	-0.0
1,748,281	-		LRK54_RS07975	0.90	-2.0
1,748,281	-		LRK54_RS07975	0.90	+0.3
1,748,281	-		LRK54_RS07975	0.90	+0.5
1,748,281	-		LRK54_RS07975	0.90	+0.9
1,748,281	-		LRK54_RS07975	0.90	+0.3
1,748,281	-		LRK54_RS07975	0.90	-1.2
1,748,281	-		LRK54_RS07975	0.90	-0.4
1,748,281	-		LRK54_RS07975	0.90	-0.1
1,748,281	-		LRK54_RS07975	0.90	-0.2
1,748,281	-		LRK54_RS07975	0.90	-0.8
1,748,281	-		LRK54_RS07975	0.90	-0.3
1,748,281	-		LRK54_RS07975	0.90	-0.8
1,748,281	-		LRK54_RS07975	0.90	-0.2
1,748,281	-		LRK54_RS07975	0.90	+0.5
1,748,281	-		LRK54_RS07975	0.90	-0.8
1,748,281	-		LRK54_RS07975	0.90	-1.0
1,748,281	-		LRK54_RS07975	0.90	+0.1
1,748,281	-		LRK54_RS07975	0.90	-0.7
1,748,281	-		LRK54_RS07975	0.90	-0.5
1,748,301	+				-0.5
1,748,301	+				-0.3
1,748,301	+				-1.3
1,748,301	+				+0.4
1,748,302	-				-1.3
1,748,302	-				-0.3
1,748,302	-				-0.7
1,748,302	-				-0.2
1,748,302	-				+0.1
1,748,343	+				-0.0
1,748,343	+				-0.9
1,748,343	+				-0.5
1,748,343	+				-1.7
1,748,344	-				-0.6
1,748,344	-				+0.0
1,748,367	+				-0.2
1,748,469	+				+0.4
1,748,469	+				-0.8
1,748,469	+				+1.0
1,748,469	+				-0.1
1,748,469	+				+1.1
1,748,469	+				-0.3
1,748,469	+				+0.8
1,748,469	+				+0.2
1,748,469	+				-0.5
1,748,469	+				-0.4
1,748,469	+				+0.1
1,748,469	+				+0.0
1,748,469	+				-0.8
1,748,469	+				+0.9
1,748,470	-				-0.5
1,748,470	-				-0.4
1,748,470	-				-0.4
1,748,470	-				+1.0
1,748,470	-				+0.7
1,748,470	-				+0.8
1,748,470	-				-0.4
1,748,470	-				-2.0
1,748,470	-				+0.0
1,748,470	-				+0.1
1,748,470	-				-0.5
1,748,470	-				-0.1
1,748,470	-				-0.0
1,748,470	-				-0.1
1,748,470	-				-0.1
1,748,470	-				-0.7
1,748,470	-				+0.3
1,748,499	+				+0.5
1,748,499	+				-0.1
1,748,499	+				-0.8
1,748,500	-				-1.3
1,748,500	-				+0.4
1,748,623	+				-0.1
1,748,623	+				-1.5
1,748,623	+				-0.3
1,748,623	+				+0.4
1,748,623	+				+0.0
1,748,623	+				-0.4
1,748,623	+				+0.6
1,748,623	+				-0.6
1,748,623	+				-0.5
1,748,623	+				-0.0
1,748,623	+				-0.6
1,748,623	+				-0.1
1,748,623	+				+0.3
1,748,623	+				-0.2
1,748,623	+				+0.5
1,748,623	+				-1.2
1,748,623	+				+0.2
1,748,623	+				+0.1
1,748,623	+				-0.3
1,748,623	+				-0.3
1,748,624	-				-0.1
1,748,624	-				-0.7
1,748,624	-				+0.6
1,748,624	-				-1.3
1,748,624	-				+0.1
1,748,624	-				-0.2
1,748,624	-				+0.6
1,748,624	-				+0.8
1,748,624	-				+0.1
1,748,624	-				-0.1
1,748,624	-				-0.5
1,748,624	-				-0.4
1,748,624	-				+0.2
1,748,624	-				-0.9
1,748,648	+				+0.2
1,748,648	+				+0.6
1,748,649	-				-0.0
1,748,745	-				-0.5
1,749,026	-		LRK54_RS07980	0.20	-0.0
1,749,074	+		LRK54_RS07980	0.23	-1.0
1,749,075	-		LRK54_RS07980	0.23	-0.2
1,749,075	-		LRK54_RS07980	0.23	-0.5
1,749,827	+		LRK54_RS07980	0.76	+1.8
1,749,827	+		LRK54_RS07980	0.76	-0.5
1,749,827	+		LRK54_RS07980	0.76	+1.2
1,749,827	+		LRK54_RS07980	0.76	+0.7
1,749,876	+		LRK54_RS07980	0.80	+0.2
1,749,877	-		LRK54_RS07980	0.80	-0.4
1,749,877	-		LRK54_RS07980	0.80	-0.0
1,749,878	+		LRK54_RS07980	0.80	-2.1
1,749,878	+		LRK54_RS07980	0.80	-0.7
1,749,878	+		LRK54_RS07980	0.80	-2.5
1,749,879	-		LRK54_RS07980	0.80	-0.5
1,749,879	-		LRK54_RS07980	0.80	-0.8
1,750,185	+				-0.8
1,750,185	+				-0.4
1,750,185	+				-0.5
1,750,185	+				-0.8
1,750,186	-				-0.4
1,750,186	-				+0.4
1,750,186	-				-1.7
1,750,186	-				+0.2
1,750,407	-		LRK54_RS07985	0.25	-0.1
1,750,407	-		LRK54_RS07985	0.25	-0.6
1,750,407	-		LRK54_RS07985	0.25	-0.6
1,750,536	+		LRK54_RS07985	0.37	-1.4
1,750,537	-		LRK54_RS07985	0.38	+0.1
1,750,537	-		LRK54_RS07985	0.38	-0.4
1,750,537	-		LRK54_RS07985	0.38	-0.3
1,750,537	-		LRK54_RS07985	0.38	-1.4
1,750,537	-		LRK54_RS07985	0.38	-0.8
1,750,537	-		LRK54_RS07985	0.38	-0.6
1,750,537	-		LRK54_RS07985	0.38	-1.1
1,750,537	-		LRK54_RS07985	0.38	-1.3