Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06865

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,477,968	+		LRK54_RS06860	0.30	-0.9
1,477,968	+		LRK54_RS06860	0.30	-0.1
1,477,968	+		LRK54_RS06860	0.30	-0.7
1,477,968	+		LRK54_RS06860	0.30	-2.6
1,477,968	+		LRK54_RS06860	0.30	+0.3
1,477,968	+		LRK54_RS06860	0.30	-0.9
1,477,968	+		LRK54_RS06860	0.30	+1.1
1,477,968	+		LRK54_RS06860	0.30	+1.6
1,477,968	+		LRK54_RS06860	0.30	-1.1
1,477,968	+		LRK54_RS06860	0.30	+0.4
1,477,969	-		LRK54_RS06860	0.30	-0.4
1,477,969	-		LRK54_RS06860	0.30	-0.4
1,477,969	-		LRK54_RS06860	0.30	-0.0
1,477,969	-		LRK54_RS06860	0.30	-2.3
1,477,969	-		LRK54_RS06860	0.30	-1.0
1,477,969	-		LRK54_RS06860	0.30	-0.3
1,477,969	-		LRK54_RS06860	0.30	-1.4
1,477,969	-		LRK54_RS06860	0.30	-0.0
1,477,969	-		LRK54_RS06860	0.30	-0.4
1,477,969	-		LRK54_RS06860	0.30	+0.2
1,477,969	-		LRK54_RS06860	0.30	-1.4
1,477,969	-		LRK54_RS06860	0.30	+0.9
1,478,067	+		LRK54_RS06860	0.38	-0.6
1,478,067	+		LRK54_RS06860	0.38	-0.5
1,478,067	+		LRK54_RS06860	0.38	-2.0
1,478,067	+		LRK54_RS06860	0.38	+0.5
1,478,067	+		LRK54_RS06860	0.38	-2.1
1,478,067	+		LRK54_RS06860	0.38	-1.0
1,478,068	-		LRK54_RS06860	0.38	-0.4
1,478,068	-		LRK54_RS06860	0.38	-2.5
1,478,068	-		LRK54_RS06860	0.38	-1.1
1,478,068	-		LRK54_RS06860	0.38	-1.2
1,478,068	-		LRK54_RS06860	0.38	-0.8
1,478,068	-		LRK54_RS06860	0.38	+0.8
1,478,068	-		LRK54_RS06860	0.38	-1.0
1,478,068	-		LRK54_RS06860	0.38	-1.1
1,478,068	-		LRK54_RS06860	0.38	-0.3
1,478,068	-		LRK54_RS06860	0.38	-2.5
1,478,193	+		LRK54_RS06860	0.48	-1.0
1,478,193	+		LRK54_RS06860	0.48	-1.2
1,478,193	+		LRK54_RS06860	0.48	-1.0
1,478,193	+		LRK54_RS06860	0.48	-0.8
1,478,193	+		LRK54_RS06860	0.48	-1.4
1,478,193	+		LRK54_RS06860	0.48	-1.2
1,478,193	+		LRK54_RS06860	0.48	-2.7
1,478,193	+		LRK54_RS06860	0.48	-2.5
1,478,193	+		LRK54_RS06860	0.48	-0.9
1,478,194	-		LRK54_RS06860	0.48	-0.3
1,478,194	-		LRK54_RS06860	0.48	-1.2
1,478,194	-		LRK54_RS06860	0.48	-1.1
1,478,194	-		LRK54_RS06860	0.48	-1.3
1,478,663	+		LRK54_RS06860	0.86	-0.7
1,478,663	+		LRK54_RS06860	0.86	-1.5
1,478,663	+		LRK54_RS06860	0.86	+0.1
1,478,663	+		LRK54_RS06860	0.86	-1.9
1,478,663	+		LRK54_RS06860	0.86	-0.7
1,478,663	+		LRK54_RS06860	0.86	-0.4
1,478,663	+		LRK54_RS06860	0.86	-1.0
1,478,663	+		LRK54_RS06860	0.86	-2.4
1,478,663	+		LRK54_RS06860	0.86	-1.0
1,478,664	-		LRK54_RS06860	0.86	-0.8
1,478,664	-		LRK54_RS06860	0.86	-1.0
1,478,664	-		LRK54_RS06860	0.86	-0.4
1,478,664	-		LRK54_RS06860	0.86	-2.7
1,478,664	-		LRK54_RS06860	0.86	-1.2
1,478,664	-		LRK54_RS06860	0.86	-2.3
1,478,664	-		LRK54_RS06860	0.86	-2.3
1,478,664	-		LRK54_RS06860	0.86	-2.6
1,478,664	-		LRK54_RS06860	0.86	-2.4
1,478,664	-		LRK54_RS06860	0.86	-1.0
1,478,754	+				-0.2
1,478,754	+				-1.8
1,478,754	+				-0.6
1,478,754	+				-1.5
1,478,754	+				-1.2
1,478,754	+				-2.1
1,478,755	-				-0.3
1,478,755	-				-1.3
1,478,755	-				-1.4
1,478,755	-				-1.1
1,478,755	-				-0.5
1,478,755	-				-1.3
1,478,829	+				-0.5
1,478,829	+				-0.8
1,478,829	+				-0.9
1,478,829	+				-0.4
1,478,829	+				-0.2
1,478,829	+				-1.9
1,478,830	-				-1.8
1,478,830	-				-0.8
1,478,830	-				-0.4
1,479,068	+		LRK54_RS06865	0.20	-1.9
1,479,068	+		LRK54_RS06865	0.20	-1.8
1,479,068	+		LRK54_RS06865	0.20	-2.8
1,479,069	-		LRK54_RS06865	0.20	-2.0
1,479,069	-		LRK54_RS06865	0.20	-0.1
1,479,069	-		LRK54_RS06865	0.20	-1.2
1,479,069	-		LRK54_RS06865	0.20	-0.1
1,479,069	-		LRK54_RS06865	0.20	-0.4
1,479,069	-		LRK54_RS06865	0.20	-0.5
1,479,069	-		LRK54_RS06865	0.20	-0.5
1,479,434	+		LRK54_RS06865	0.52	-0.2
1,479,434	+		LRK54_RS06865	0.52	-1.0
1,479,434	+		LRK54_RS06865	0.52	-1.2
1,479,434	+		LRK54_RS06865	0.52	-1.9
1,479,434	+		LRK54_RS06865	0.52	-1.8
1,479,434	+		LRK54_RS06865	0.52	-1.0
1,479,434	+		LRK54_RS06865	0.52	-0.4
1,479,434	+		LRK54_RS06865	0.52	-0.6
1,479,435	-		LRK54_RS06865	0.52	+0.2
1,479,435	-		LRK54_RS06865	0.52	+1.1
1,479,435	-		LRK54_RS06865	0.52	-1.1
1,479,435	-		LRK54_RS06865	0.52	-1.6
1,479,435	-		LRK54_RS06865	0.52	-1.2
1,479,435	-		LRK54_RS06865	0.52	-1.0
1,479,435	-		LRK54_RS06865	0.52	-1.4
1,479,435	-		LRK54_RS06865	0.52	-1.2
1,479,473	+		LRK54_RS06865	0.55	-2.3
1,479,473	+		LRK54_RS06865	0.55	-2.5
1,479,473	+		LRK54_RS06865	0.55	-0.7
1,479,473	+		LRK54_RS06865	0.55	-2.6
1,479,473	+		LRK54_RS06865	0.55	-1.4
1,479,473	+		LRK54_RS06865	0.55	-1.3
1,479,473	+		LRK54_RS06865	0.55	-1.9
1,479,473	+		LRK54_RS06865	0.55	-0.5
1,479,473	+		LRK54_RS06865	0.55	-0.6
1,479,473	+		LRK54_RS06865	0.55	-1.7
1,479,473	+		LRK54_RS06865	0.55	-2.6
1,479,474	-		LRK54_RS06865	0.55	-1.9
1,479,474	-		LRK54_RS06865	0.55	-0.4
1,479,474	-		LRK54_RS06865	0.55	+2.9
1,479,474	-		LRK54_RS06865	0.55	-0.9
1,479,474	-		LRK54_RS06865	0.55	-1.4
1,479,474	-		LRK54_RS06865	0.55	-2.0
1,479,789	-		LRK54_RS06865	0.83	+0.3
1,479,789	-		LRK54_RS06865	0.83	-0.9
1,479,789	-		LRK54_RS06865	0.83	-0.7
1,479,789	-		LRK54_RS06865	0.83	-0.2
1,479,998	+				-0.2
1,479,998	+				-1.4
1,479,998	+				-0.1
1,479,998	+				-0.5
1,479,998	+				+0.0
1,479,998	+				-0.4
1,479,998	+				-0.8
1,479,998	+				-0.2
1,479,998	+				-0.2
1,479,998	+				+0.0
1,479,998	+				+0.2
1,479,998	+				-0.1
1,479,998	+				+0.6
1,479,998	+				-0.3
1,479,998	+				-0.3
1,479,998	+				+0.1
1,479,998	+				+0.9
1,479,998	+				-0.7
1,479,999	-				-0.4
1,479,999	-				+0.2
1,479,999	-				-0.4
1,479,999	-				-0.1
1,479,999	-				+0.2
1,479,999	-				-1.8
1,479,999	-				+0.5
1,479,999	-				-0.2
1,479,999	-				-0.1
1,479,999	-				-0.2
1,479,999	-				+0.0
1,479,999	-				+1.0
1,479,999	-				-0.4
1,479,999	-				-0.7
1,479,999	-				-0.5
1,480,022	+				-0.8
1,480,022	+				+0.3
1,480,023	-				+0.7
1,480,023	-				-1.0
1,480,023	-				+0.4
1,480,851	+				-1.0
1,480,852	-				+0.4
1,480,852	-				-0.3
1,480,852	-				+0.1
1,480,863	+				+0.9
1,480,863	+				-0.4
1,480,863	+				-0.1
1,480,863	+				-0.7
1,480,863	+				+0.4
1,480,863	+				-0.7
1,480,863	+				-0.8
1,480,863	+				-0.8
1,480,863	+				-0.1
1,480,863	+				-1.0
1,480,863	+				+0.2
1,480,863	+				-0.5
1,480,863	+				-0.3
1,480,863	+				-0.0
1,480,863	+				-0.1
1,480,863	+				-3.1
1,480,863	+				-0.1
1,480,864	-				+0.3
1,480,864	-				+0.3
1,480,864	-				-0.3
1,480,864	-				-0.6
1,480,864	-				-0.5
1,480,864	-				-0.0
1,480,864	-				-0.0