Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05665

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,222,792	+		LRK54_RS05660	0.47	+0.1
1,222,792	+		LRK54_RS05660	0.47	-0.2
1,222,792	+		LRK54_RS05660	0.47	+0.4
1,222,792	+		LRK54_RS05660	0.47	+0.3
1,222,792	+		LRK54_RS05660	0.47	-1.1
1,222,792	+		LRK54_RS05660	0.47	+0.9
1,222,792	+		LRK54_RS05660	0.47	-0.6
1,222,792	+		LRK54_RS05660	0.47	-1.2
1,222,792	+		LRK54_RS05660	0.47	-0.3
1,222,792	+		LRK54_RS05660	0.47	+1.1
1,222,792	+		LRK54_RS05660	0.47	+0.9
1,222,792	+		LRK54_RS05660	0.47	-1.0
1,222,792	+		LRK54_RS05660	0.47	+0.2
1,222,792	+		LRK54_RS05660	0.47	+1.4
1,222,793	-		LRK54_RS05660	0.47	-0.7
1,222,793	-		LRK54_RS05660	0.47	+0.1
1,222,793	-		LRK54_RS05660	0.47	-0.1
1,222,793	-		LRK54_RS05660	0.47	-2.1
1,222,793	-		LRK54_RS05660	0.47	-0.1
1,222,793	-		LRK54_RS05660	0.47	+0.3
1,222,793	-		LRK54_RS05660	0.47	+0.8
1,222,793	-		LRK54_RS05660	0.47	+1.8
1,222,793	-		LRK54_RS05660	0.47	-0.9
1,222,793	-		LRK54_RS05660	0.47	-1.2
1,222,793	-		LRK54_RS05660	0.47	-1.0
1,222,793	-		LRK54_RS05660	0.47	+0.2
1,222,793	-		LRK54_RS05660	0.47	-1.4
1,222,793	-		LRK54_RS05660	0.47	-0.1
1,222,793	-		LRK54_RS05660	0.47	+0.0
1,222,793	-		LRK54_RS05660	0.47	-0.8
1,222,793	-		LRK54_RS05660	0.47	-1.3
1,222,793	-		LRK54_RS05660	0.47	-1.4
1,222,793	-		LRK54_RS05660	0.47	-0.4
1,222,793	-		LRK54_RS05660	0.47	-0.8
1,222,793	-		LRK54_RS05660	0.47	-1.5
1,222,793	-		LRK54_RS05660	0.47	+0.8
1,222,793	-		LRK54_RS05660	0.47	-1.6
1,222,793	-		LRK54_RS05660	0.47	-1.5
1,222,793	-		LRK54_RS05660	0.47	-0.3
1,223,025	-		LRK54_RS05660	0.67	-0.9
1,223,077	+		LRK54_RS05660	0.72	+0.9
1,223,077	+		LRK54_RS05660	0.72	+0.3
1,223,077	+		LRK54_RS05660	0.72	+0.4
1,223,078	-		LRK54_RS05660	0.72	-0.1
1,223,078	-		LRK54_RS05660	0.72	+1.9
1,223,078	-		LRK54_RS05660	0.72	-2.5
1,223,078	-		LRK54_RS05660	0.72	-0.6
1,223,078	-		LRK54_RS05660	0.72	-0.6
1,223,078	-		LRK54_RS05660	0.72	-0.1
1,223,078	-		LRK54_RS05660	0.72	-0.7
1,223,078	-		LRK54_RS05660	0.72	-0.2
1,223,078	-		LRK54_RS05660	0.72	-0.5
1,223,078	-		LRK54_RS05660	0.72	-0.1
1,223,078	-		LRK54_RS05660	0.72	+0.1
1,223,078	-		LRK54_RS05660	0.72	+0.0
1,223,078	-		LRK54_RS05660	0.72	+0.2
1,223,078	-		LRK54_RS05660	0.72	-0.9
1,223,089	+		LRK54_RS05660	0.73	-0.9
1,223,089	+		LRK54_RS05660	0.73	-1.2
1,223,089	+		LRK54_RS05660	0.73	+1.4
1,223,090	-		LRK54_RS05660	0.73	-0.2
1,223,090	-		LRK54_RS05660	0.73	-0.3
1,223,090	-		LRK54_RS05660	0.73	-1.2
1,223,090	-		LRK54_RS05660	0.73	-0.1
1,223,218	+		LRK54_RS05660	0.84	+0.9
1,223,218	+		LRK54_RS05660	0.84	+1.6
1,223,218	+		LRK54_RS05660	0.84	-0.2
1,223,219	-		LRK54_RS05660	0.84	-0.3
1,223,219	-		LRK54_RS05660	0.84	-0.1
1,223,219	-		LRK54_RS05660	0.84	+1.7
1,223,219	-		LRK54_RS05660	0.84	-2.2
1,223,231	+		LRK54_RS05660	0.85	-0.4
1,223,232	-		LRK54_RS05660	0.85	-0.6
1,223,258	-				+1.9
1,223,258	-		LRK54_RS05660	0.87	-0.4
1,223,290	+		LRK54_RS05660	0.90	-0.2
1,223,290	+		LRK54_RS05660	0.90	-0.5
1,223,290	+		LRK54_RS05660	0.90	+0.4
1,223,290	+		LRK54_RS05660	0.90	+0.2
1,223,290	+		LRK54_RS05660	0.90	+1.4
1,223,290	+		LRK54_RS05660	0.90	+0.1
1,223,290	+		LRK54_RS05660	0.90	-0.6
1,223,290	+		LRK54_RS05660	0.90	+1.9
1,223,290	+		LRK54_RS05660	0.90	+1.4
1,223,291	-		LRK54_RS05660	0.90	-0.2
1,223,291	-		LRK54_RS05660	0.90	-0.1
1,223,291	-		LRK54_RS05660	0.90	+0.6
1,223,291	-		LRK54_RS05660	0.90	-2.2
1,223,291	-		LRK54_RS05660	0.90	-1.5
1,223,291	-		LRK54_RS05660	0.90	-0.5
1,223,291	-		LRK54_RS05660	0.90	-0.1
1,223,291	-		LRK54_RS05660	0.90	-0.9
1,223,291	-		LRK54_RS05660	0.90	-0.3
1,223,291	-		LRK54_RS05660	0.90	+0.1
1,223,291	-		LRK54_RS05660	0.90	-0.6
1,223,291	-		LRK54_RS05660	0.90	+0.4
1,223,291	-		LRK54_RS05660	0.90	-1.0
1,223,291	-		LRK54_RS05660	0.90	+0.0
1,223,301	-				+0.8
1,223,301	-				-0.5
1,223,301	-				-1.2
1,223,301	-				-0.4
1,223,301	-				-0.6
1,223,301	-				-0.6
1,223,305	+				-0.1
1,223,305	+				-1.0
1,223,305	+				+1.9
1,223,305	+				+0.9
1,223,305	+				+0.9
1,223,305	+				+0.5
1,223,305	+				-0.9
1,223,305	+				-0.9
1,223,305	+				-1.0
1,223,305	+				-0.4
1,223,305	+				-0.8
1,223,305	+				-0.9
1,223,305	+				-0.1
1,223,306	-				+0.3
1,223,306	-				+0.1
1,223,306	-				-1.0
1,223,306	-				-0.2
1,223,306	-				+1.4
1,223,306	-				-0.1
1,223,306	-				+1.8
1,223,306	-				-1.4
1,223,306	-				-0.4
1,223,306	-				-1.7
1,223,306	-				+0.1
1,223,306	-				-0.7
1,223,306	-				+1.1
1,223,306	-				-1.8
1,223,306	-				+0.2
1,223,306	-				+0.1
1,223,306	-				+0.3
1,223,306	-				+0.1
1,223,306	-				-0.5
1,223,306	-				-0.1
1,223,469	+				-1.5
1,223,470	-				-0.0
1,223,470	-				-1.2
1,223,470	-				-1.3
1,223,470	-				-0.9
1,223,476	+				+0.1
1,223,670	+				-1.0
1,223,670	+				-2.7
1,223,670	+				-0.4
1,223,670	+				+0.5
1,223,670	+				-1.0
1,223,670	+				+0.0
1,223,670	+				+0.3
1,223,670	+				+0.9
1,223,670	+				-0.5
1,223,670	+				+0.3
1,223,670	+				-0.3
1,223,670	+				+0.8
1,223,670	+				-0.2
1,223,670	+				+0.0
1,223,670	+				-0.0
1,223,670	+				-0.4
1,223,670	+				+0.6
1,223,670	+				-1.1
1,223,670	+				+0.2
1,223,671	-				-0.2
1,223,671	-				-1.4
1,223,671	-				-0.1
1,223,671	-				-0.8
1,223,671	-				-0.2
1,223,671	-				+0.0
1,223,809	-		LRK54_RS05665	0.12	+0.1
1,224,043	-		LRK54_RS05665	0.34	-0.9
1,224,111	+		LRK54_RS05665	0.40	-0.1
1,224,111	+		LRK54_RS05665	0.40	+0.4
1,224,111	+		LRK54_RS05665	0.40	-1.5
1,224,111	+		LRK54_RS05665	0.40	+0.8
1,224,111	+		LRK54_RS05665	0.40	-0.4
1,224,112	-		LRK54_RS05665	0.40	+0.4
1,224,112	-		LRK54_RS05665	0.40	+0.2
1,224,112	-		LRK54_RS05665	0.40	+0.2
1,224,112	-		LRK54_RS05665	0.40	+0.4
1,224,112	-		LRK54_RS05665	0.40	+0.6
1,224,112	-		LRK54_RS05665	0.40	-0.2
1,224,112	-		LRK54_RS05665	0.40	-0.9
1,224,112	-		LRK54_RS05665	0.40	-0.2
1,224,224	+		LRK54_RS05665	0.51	+0.9
1,224,224	+		LRK54_RS05665	0.51	-0.2
1,224,224	+		LRK54_RS05665	0.51	-0.1
1,224,224	+		LRK54_RS05665	0.51	+1.4
1,224,224	+		LRK54_RS05665	0.51	-1.0
1,224,225	-		LRK54_RS05665	0.51	-1.2
1,224,225	-		LRK54_RS05665	0.51	-1.1
1,224,225	-		LRK54_RS05665	0.51	+0.1
1,224,225	-		LRK54_RS05665	0.51	+0.9
1,224,229	-		LRK54_RS05665	0.51	+0.1
1,224,229	-		LRK54_RS05665	0.51	+0.2
1,224,229	-		LRK54_RS05665	0.51	-1.4
1,224,267	+		LRK54_RS05665	0.55	-0.9
1,224,268	-		LRK54_RS05665	0.55	-0.5
1,224,268	-		LRK54_RS05665	0.55	-1.6
1,224,276	+		LRK54_RS05665	0.55	-0.1
1,224,346	-		LRK54_RS05665	0.62	-0.2
1,224,441	+		LRK54_RS05665	0.71	-0.4
1,224,441	+		LRK54_RS05665	0.71	-0.6
1,224,442	-		LRK54_RS05665	0.71	-0.9
1,224,442	-		LRK54_RS05665	0.71	+0.4
1,224,442	-		LRK54_RS05665	0.71	-0.1
1,224,442	-		LRK54_RS05665	0.71	-1.3
1,224,558	+		LRK54_RS05665	0.82	-0.6
1,224,558	+		LRK54_RS05665	0.82	-0.1
1,224,558	+		LRK54_RS05665	0.82	-0.6
1,224,558	+		LRK54_RS05665	0.82	-0.8
1,224,559	-		LRK54_RS05665	0.82	-0.8
1,224,559	-		LRK54_RS05665	0.82	-0.2
1,224,682	-				+0.1
1,224,682	-				+1.4
1,224,682	-				-0.8
1,224,682	-				+4.5
1,224,726	+				+0.4
1,224,726	+				+0.1
1,224,726	+				-0.9
1,224,726	+				+0.2
1,224,727	-				-1.3
1,224,727	-				-0.2
1,224,727	-				-0.3
1,224,875	+		LRK54_RS05670	0.11	+0.1
1,224,875	+		LRK54_RS05670	0.11	+0.1
1,224,876	-		LRK54_RS05670	0.11	+0.3
1,224,893	+		LRK54_RS05670	0.13	-0.1
1,224,893	+		LRK54_RS05670	0.13	-0.6
1,224,893	+		LRK54_RS05670	0.13	+1.2
1,224,893	+				+0.1
1,224,893	+		LRK54_RS05670	0.13	-0.4
1,224,893	+		LRK54_RS05670	0.13	+0.1
1,224,893	+		LRK54_RS05670	0.13	+0.2
1,224,893	+		LRK54_RS05670	0.13	+0.1
1,224,893	+		LRK54_RS05670	0.13	+0.7
1,224,894	-		LRK54_RS05670	0.13	+1.2
1,224,894	-		LRK54_RS05670	0.13	+1.4
1,224,894	-		LRK54_RS05670	0.13	-1.2
1,224,894	-		LRK54_RS05670	0.13	+0.9
1,225,124	+		LRK54_RS05670	0.39	+1.4
1,225,200	+		LRK54_RS05670	0.47	-0.5
1,225,200	+		LRK54_RS05670	0.47	-0.2
1,225,292	+		LRK54_RS05670	0.58	-0.4
1,225,292	+		LRK54_RS05670	0.58	+1.9
1,225,310	+		LRK54_RS05670	0.60	-0.5
1,225,310	+		LRK54_RS05670	0.60	+0.6
1,225,310	+		LRK54_RS05670	0.60	-0.3
1,225,310	+		LRK54_RS05670	0.60	-1.5
1,225,310	+		LRK54_RS05670	0.60	-0.5
1,225,310	+		LRK54_RS05670	0.60	+0.2
1,225,311	-		LRK54_RS05670	0.60	+0.1
1,225,311	-		LRK54_RS05670	0.60	-0.1
1,225,311	-		LRK54_RS05670	0.60	-1.1
1,225,316	+		LRK54_RS05670	0.60	-1.8
1,225,316	+		LRK54_RS05670	0.60	-0.6
1,225,316	+		LRK54_RS05670	0.60	-0.4
1,225,316	+		LRK54_RS05670	0.60	+0.0
1,225,316	+		LRK54_RS05670	0.60	-0.2
1,225,317	-		LRK54_RS05670	0.60	+1.4
1,225,401	-		LRK54_RS05670	0.70	-1.3
1,225,401	-		LRK54_RS05670	0.70	+1.4
1,225,401	-		LRK54_RS05670	0.70	-0.3
1,225,496	+		LRK54_RS05670	0.80	-0.6
1,225,496	+		LRK54_RS05670	0.80	-1.6
1,225,496	+		LRK54_RS05670	0.80	+1.4
1,225,496	+		LRK54_RS05670	0.80	-0.4
1,225,497	-		LRK54_RS05670	0.81	-0.6
1,225,497	-		LRK54_RS05670	0.81	-1.9
1,225,497	-		LRK54_RS05670	0.81	-1.1
1,225,497	-		LRK54_RS05670	0.81	-0.6
1,225,497	-		LRK54_RS05670	0.81	-0.6
1,225,497	-		LRK54_RS05670	0.81	+0.3
1,225,556	+		LRK54_RS05670	0.87	-1.0
1,225,632	-				-2.0