Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05650

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS05645 and LRK54_RS05650 are separated by 3 nucleotidesLRK54_RS05650 and LRK54_RS05655 overlap by 11 nucleotidesLRK54_RS05655 and LRK54_RS05660 are separated by 119 nucleotides LRK54_RS05645: LRK54_RS05645 - glycosyltransferase, at 1,215,558 to 1,219,907 _RS05645 LRK54_RS05650: LRK54_RS05650 - ABC transporter ATP-binding protein, at 1,219,911 to 1,221,308 _RS05650 LRK54_RS05655: LRK54_RS05655 - ABC transporter permease, at 1,221,298 to 1,222,122 _RS05655 LRK54_RS05660: LRK54_RS05660 - PLP-dependent aspartate aminotransferase family protein, at 1,222,242 to 1,223,408 _RS05660 Position (kb) 1219 1220 1221 1222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1220.167 kb on + strand, within LRK54_RS05650at 1220.167 kb on + strand, within LRK54_RS05650at 1220.168 kb on - strand, within LRK54_RS05650at 1220.168 kb on - strand, within LRK54_RS05650at 1220.168 kb on - strand, within LRK54_RS05650at 1220.168 kb on - strand, within LRK54_RS05650at 1220.168 kb on - strand, within LRK54_RS05650at 1220.168 kb on - strand, within LRK54_RS05650at 1220.168 kb on - strand, within LRK54_RS05650at 1220.168 kb on - strand, within LRK54_RS05650at 1220.213 kb on - strand, within LRK54_RS05650at 1220.213 kb on - strand, within LRK54_RS05650at 1220.250 kb on - strand, within LRK54_RS05650at 1220.250 kb on - strand, within LRK54_RS05650at 1220.250 kb on - strand, within LRK54_RS05650at 1220.250 kb on - strand, within LRK54_RS05650at 1220.250 kb on - strand, within LRK54_RS05650at 1220.394 kb on + strand, within LRK54_RS05650at 1220.394 kb on + strand, within LRK54_RS05650at 1220.394 kb on + strand, within LRK54_RS05650at 1220.569 kb on + strand, within LRK54_RS05650at 1220.569 kb on + strand, within LRK54_RS05650at 1220.613 kb on - strand, within LRK54_RS05650at 1220.769 kb on + strand, within LRK54_RS05650at 1220.821 kb on + strand, within LRK54_RS05650at 1220.821 kb on + strand, within LRK54_RS05650at 1220.821 kb on + strand, within LRK54_RS05650at 1220.822 kb on - strand, within LRK54_RS05650at 1220.822 kb on - strand, within LRK54_RS05650at 1220.822 kb on - strand, within LRK54_RS05650at 1220.822 kb on - strand, within LRK54_RS05650at 1220.822 kb on - strand, within LRK54_RS05650at 1220.822 kb on - strand, within LRK54_RS05650at 1220.822 kb on - strand, within LRK54_RS05650at 1220.822 kb on - strand, within LRK54_RS05650at 1220.836 kb on + strand, within LRK54_RS05650at 1220.837 kb on - strand, within LRK54_RS05650at 1220.948 kb on - strand, within LRK54_RS05650at 1220.948 kb on - strand, within LRK54_RS05650at 1221.009 kb on + strand, within LRK54_RS05650at 1221.010 kb on - strand, within LRK54_RS05650at 1221.173 kb on - strandat 1221.251 kb on - strandat 1221.259 kb on + strandat 1221.279 kb on + strandat 1221.279 kb on + strandat 1221.380 kb on + strandat 1221.380 kb on + strandat 1221.381 kb on - strand, within LRK54_RS05655at 1221.381 kb on - strand, within LRK54_RS05655at 1221.381 kb on - strand, within LRK54_RS05655at 1221.467 kb on + strand, within LRK54_RS05655at 1221.468 kb on - strand, within LRK54_RS05655at 1221.637 kb on + strand, within LRK54_RS05655at 1221.638 kb on - strand, within LRK54_RS05655at 1221.778 kb on + strand, within LRK54_RS05655at 1221.779 kb on - strand, within LRK54_RS05655at 1221.801 kb on + strand, within LRK54_RS05655at 1221.852 kb on - strand, within LRK54_RS05655at 1221.951 kb on + strand, within LRK54_RS05655at 1221.951 kb on + strand, within LRK54_RS05655at 1221.952 kb on - strand, within LRK54_RS05655at 1221.952 kb on - strand, within LRK54_RS05655at 1221.952 kb on - strand, within LRK54_RS05655at 1221.952 kb on - strand, within LRK54_RS05655at 1221.952 kb on - strand, within LRK54_RS05655at 1221.953 kb on + strand, within LRK54_RS05655at 1221.953 kb on + strand, within LRK54_RS05655at 1221.954 kb on - strand, within LRK54_RS05655at 1221.954 kb on - strand, within LRK54_RS05655at 1221.992 kb on - strand, within LRK54_RS05655at 1221.992 kb on - strand, within LRK54_RS05655at 1222.051 kb on + strandat 1222.051 kb on + strandat 1222.052 kb on - strandat 1222.109 kb on + strandat 1222.132 kb on + strandat 1222.133 kb on - strandat 1222.133 kb on - strandat 1222.133 kb on - strandat 1222.133 kb on - strandat 1222.133 kb on - strandat 1222.143 kb on + strandat 1222.144 kb on - strandat 1222.157 kb on + strandat 1222.157 kb on + strandat 1222.158 kb on - strandat 1222.158 kb on - strandat 1222.188 kb on + strandat 1222.188 kb on + strandat 1222.189 kb on - strandat 1222.189 kb on - strandat 1222.189 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,220,167 + LRK54_RS05650 0.18 +0.6
1,220,167 + LRK54_RS05650 0.18 -0.4
1,220,168 - LRK54_RS05650 0.18 -1.0
1,220,168 - LRK54_RS05650 0.18 -0.1
1,220,168 - LRK54_RS05650 0.18 -0.8
1,220,168 - LRK54_RS05650 0.18 -0.9
1,220,168 - LRK54_RS05650 0.18 -1.9
1,220,168 - LRK54_RS05650 0.18 -0.6
1,220,168 - LRK54_RS05650 0.18 -0.4
1,220,168 - LRK54_RS05650 0.18 -2.2
1,220,213 - LRK54_RS05650 0.22 -0.4
1,220,213 - LRK54_RS05650 0.22 -0.6
1,220,250 - LRK54_RS05650 0.24 -3.0
1,220,250 - LRK54_RS05650 0.24 -0.8
1,220,250 - LRK54_RS05650 0.24 -2.0
1,220,250 - LRK54_RS05650 0.24 -1.2
1,220,250 - LRK54_RS05650 0.24 -0.5
1,220,394 + LRK54_RS05650 0.35 -0.8
1,220,394 + LRK54_RS05650 0.35 -1.5
1,220,394 + LRK54_RS05650 0.35 -0.6
1,220,569 + LRK54_RS05650 0.47 -0.5
1,220,569 + LRK54_RS05650 0.47 -2.2
1,220,613 - LRK54_RS05650 0.50 -1.4
1,220,769 + LRK54_RS05650 0.61 -1.6
1,220,821 + LRK54_RS05650 0.65 +0.0
1,220,821 + LRK54_RS05650 0.65 -1.2
1,220,821 + LRK54_RS05650 0.65 +0.6
1,220,822 - LRK54_RS05650 0.65 -1.5
1,220,822 - LRK54_RS05650 0.65 -0.4
1,220,822 - LRK54_RS05650 0.65 -0.8
1,220,822 - LRK54_RS05650 0.65 -0.2
1,220,822 - LRK54_RS05650 0.65 +0.1
1,220,822 - LRK54_RS05650 0.65 -0.1
1,220,822 - LRK54_RS05650 0.65 +0.9
1,220,822 - LRK54_RS05650 0.65 -1.5
1,220,836 + LRK54_RS05650 0.66 +0.9
1,220,837 - LRK54_RS05650 0.66 +0.6
1,220,948 - LRK54_RS05650 0.74 -0.6
1,220,948 - LRK54_RS05650 0.74 -0.9
1,221,009 + LRK54_RS05650 0.79 +0.1
1,221,010 - LRK54_RS05650 0.79 -0.6
1,221,173 - -0.1
1,221,251 - +0.4
1,221,259 + -1.8
1,221,279 + -1.8
1,221,279 + -1.3
1,221,380 + -1.2
1,221,380 + -0.5
1,221,381 - LRK54_RS05655 0.10 +0.9
1,221,381 - LRK54_RS05655 0.10 -1.7
1,221,381 - LRK54_RS05655 0.10 -0.1
1,221,467 + LRK54_RS05655 0.20 -1.5
1,221,468 - LRK54_RS05655 0.21 +1.9
1,221,637 + LRK54_RS05655 0.41 -1.1
1,221,638 - LRK54_RS05655 0.41 -0.6
1,221,778 + LRK54_RS05655 0.58 -0.2
1,221,779 - LRK54_RS05655 0.58 +0.9
1,221,801 + LRK54_RS05655 0.61 -1.3
1,221,852 - LRK54_RS05655 0.67 -0.1
1,221,951 + LRK54_RS05655 0.79 -0.4
1,221,951 + LRK54_RS05655 0.79 -1.1
1,221,952 - LRK54_RS05655 0.79 -0.4
1,221,952 - LRK54_RS05655 0.79 -1.2
1,221,952 - LRK54_RS05655 0.79 -1.5
1,221,952 - LRK54_RS05655 0.79 +0.1
1,221,952 - LRK54_RS05655 0.79 -0.1
1,221,953 + LRK54_RS05655 0.79 -0.6
1,221,953 + LRK54_RS05655 0.79 -0.5
1,221,954 - LRK54_RS05655 0.80 -0.4
1,221,954 - LRK54_RS05655 0.80 -0.5
1,221,992 - LRK54_RS05655 0.84 -0.9
1,221,992 - LRK54_RS05655 0.84 -0.9
1,222,051 + -0.5
1,222,051 + -1.1
1,222,052 - -2.3
1,222,109 + -0.1
1,222,132 + -1.6
1,222,133 - -0.5
1,222,133 - +0.5
1,222,133 - -1.0
1,222,133 - -0.4
1,222,133 - +0.6
1,222,143 + -0.8
1,222,144 - +0.2
1,222,157 + +0.8
1,222,157 + -0.0
1,222,158 - -0.7
1,222,158 - -0.1
1,222,188 + -0.1
1,222,188 + -0.6
1,222,189 - +0.3
1,222,189 - -0.6
1,222,189 - -0.5

Or see this region's nucleotide sequence