Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03275 and LRK54_RS03280 are separated by 9 nucleotides LRK54_RS03280 and LRK54_RS03285 overlap by 4 nucleotides LRK54_RS03285 and LRK54_RS03290 are separated by 36 nucleotides
LRK54_RS03275: LRK54_RS03275 - polyprenyl diphosphate synthase, at 704,468 to 705,208
_RS03275
LRK54_RS03280: LRK54_RS03280 - phosphatidate cytidylyltransferase, at 705,218 to 706,042
_RS03280
LRK54_RS03285: LRK54_RS03285 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 706,039 to 707,214
_RS03285
LRK54_RS03290: LRK54_RS03290 - RIP metalloprotease RseP, at 707,251 to 708,597
_RS03290
Position (kb) 706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 705.206 kb on + strand at 705.206 kb on + strand at 705.206 kb on + strand at 705.206 kb on + strand at 705.206 kb on + strand at 705.206 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.455 kb on + strand, within LRK54_RS03290 at 707.455 kb on + strand, within LRK54_RS03290 at 707.455 kb on + strand, within LRK54_RS03290 at 707.872 kb on + strand, within LRK54_RS03290 at 707.872 kb on + strand, within LRK54_RS03290
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 705,206 + -0.1 705,206 + -0.0 705,206 + -0.7 705,206 + -0.8 705,206 + -0.7 705,206 + -0.4 707,215 + -0.9 707,215 + +0.1 707,215 + +0.1 707,215 + +0.8 707,215 + -0.9 707,215 + +0.3 707,215 + +0.0 707,215 + -0.6 707,215 + +0.6 707,215 + -2.5 707,216 - +1.0 707,216 - -0.8 707,216 - +0.5 707,216 - -1.1 707,216 - -0.6 707,216 - +0.2 707,216 - -0.6 707,245 + -0.2 707,245 + -3.2 707,245 + -1.5 707,245 + -0.4 707,245 + -0.6 707,245 + -1.0 707,245 + -1.1 707,245 + +0.3 707,245 + -0.6 707,245 + +0.2 707,245 + -0.6 707,245 + -1.6 707,245 + -0.5 707,245 + -0.1 707,246 - -1.0 707,246 - -1.8 707,246 - -1.7 707,246 - -1.6 707,246 - +0.8 707,246 - -2.5 707,246 - +0.3 707,246 - -0.3 707,455 + LRK54_RS03290 0.15 +0.1 707,455 + LRK54_RS03290 0.15 -0.3 707,455 + LRK54_RS03290 0.15 +0.3 707,872 + LRK54_RS03290 0.46 -0.3 707,872 + LRK54_RS03290 0.46 -0.0
Or see this region's nucleotide sequence