Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS01395

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS01390 and LRK54_RS01395 overlap by 4 nucleotidesLRK54_RS01395 and LRK54_RS01400 are separated by 111 nucleotidesLRK54_RS01400 and LRK54_RS01405 are separated by 107 nucleotides LRK54_RS01390: LRK54_RS01390 - ACR3 family arsenite efflux transporter, at 301,956 to 303,041 _RS01390 LRK54_RS01395: LRK54_RS01395 - arsenate reductase ArsC, at 303,038 to 303,544 _RS01395 LRK54_RS01400: LRK54_RS01400 - arsenical resistance protein ArsH, at 303,656 to 304,387 _RS01400 LRK54_RS01405: LRK54_RS01405 - YdeI/OmpD-associated family protein, at 304,495 to 305,076 _RS01405 Position (kb) 303 304Strain fitness (log2 ratio) -2 -1 0 1 2at 302.188 kb on + strand, within LRK54_RS01390at 302.188 kb on + strand, within LRK54_RS01390at 302.189 kb on - strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.209 kb on + strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.210 kb on - strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.428 kb on + strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.429 kb on - strand, within LRK54_RS01390at 302.644 kb on + strand, within LRK54_RS01390at 302.644 kb on + strand, within LRK54_RS01390at 302.644 kb on + strand, within LRK54_RS01390at 302.644 kb on + strand, within LRK54_RS01390at 302.644 kb on + strand, within LRK54_RS01390at 302.644 kb on + strand, within LRK54_RS01390at 302.644 kb on + strand, within LRK54_RS01390at 302.645 kb on - strand, within LRK54_RS01390at 302.645 kb on - strand, within LRK54_RS01390at 302.645 kb on - strand, within LRK54_RS01390at 302.645 kb on - strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.949 kb on + strandat 303.148 kb on - strand, within LRK54_RS01395at 303.148 kb on - strand, within LRK54_RS01395at 303.402 kb on + strand, within LRK54_RS01395at 303.585 kb on - strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.645 kb on + strandat 303.645 kb on + strandat 303.645 kb on + strandat 303.645 kb on + strandat 303.645 kb on + strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.655 kb on + strandat 303.655 kb on + strandat 303.655 kb on + strandat 303.655 kb on + strandat 303.655 kb on + strandat 303.656 kb on - strandat 303.656 kb on - strandat 303.656 kb on - strandat 303.656 kb on - strandat 303.731 kb on + strand, within LRK54_RS01400at 303.731 kb on + strand, within LRK54_RS01400at 303.732 kb on - strand, within LRK54_RS01400at 303.732 kb on - strand, within LRK54_RS01400at 303.732 kb on - strand, within LRK54_RS01400at 304.190 kb on + strand, within LRK54_RS01400at 304.190 kb on + strand, within LRK54_RS01400at 304.191 kb on - strand, within LRK54_RS01400at 304.191 kb on - strand, within LRK54_RS01400at 304.191 kb on - strand, within LRK54_RS01400at 304.259 kb on + strand, within LRK54_RS01400at 304.259 kb on + strand, within LRK54_RS01400at 304.260 kb on - strand, within LRK54_RS01400at 304.274 kb on + strand, within LRK54_RS01400at 304.274 kb on + strand, within LRK54_RS01400at 304.420 kb on + strandat 304.496 kb on + strandat 304.496 kb on + strandat 304.497 kb on - strandat 304.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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302,188 + LRK54_RS01390 0.21 -1.3
302,188 + LRK54_RS01390 0.21 +0.2
302,189 - LRK54_RS01390 0.21 -0.5
302,209 + LRK54_RS01390 0.23 +0.2
302,209 + LRK54_RS01390 0.23 -1.6
302,209 + LRK54_RS01390 0.23 -1.1
302,209 + LRK54_RS01390 0.23 +0.2
302,209 + LRK54_RS01390 0.23 -0.9
302,209 + LRK54_RS01390 0.23 +0.1
302,209 + LRK54_RS01390 0.23 -0.8
302,209 + LRK54_RS01390 0.23 -1.0
302,209 + LRK54_RS01390 0.23 -0.6
302,209 + LRK54_RS01390 0.23 -1.0
302,209 + LRK54_RS01390 0.23 -0.8
302,209 + LRK54_RS01390 0.23 -0.2
302,209 + LRK54_RS01390 0.23 +0.7
302,209 + LRK54_RS01390 0.23 +0.2
302,209 + LRK54_RS01390 0.23 -1.0
302,209 + LRK54_RS01390 0.23 -1.8
302,209 + LRK54_RS01390 0.23 -1.3
302,209 + LRK54_RS01390 0.23 -0.3
302,210 - LRK54_RS01390 0.23 -0.3
302,210 - LRK54_RS01390 0.23 +0.6
302,210 - LRK54_RS01390 0.23 -0.9
302,210 - LRK54_RS01390 0.23 -0.1
302,210 - LRK54_RS01390 0.23 +0.5
302,210 - LRK54_RS01390 0.23 -0.3
302,210 - LRK54_RS01390 0.23 -0.1
302,210 - LRK54_RS01390 0.23 +0.1
302,210 - LRK54_RS01390 0.23 -0.3
302,210 - LRK54_RS01390 0.23 -0.3
302,210 - LRK54_RS01390 0.23 -1.5
302,210 - LRK54_RS01390 0.23 -0.2
302,210 - LRK54_RS01390 0.23 -0.6
302,210 - LRK54_RS01390 0.23 -0.5
302,210 - LRK54_RS01390 0.23 -1.7
302,210 - LRK54_RS01390 0.23 -0.4
302,210 - LRK54_RS01390 0.23 +0.4
302,210 - LRK54_RS01390 0.23 -0.5
302,428 + LRK54_RS01390 0.43 -0.3
302,428 + LRK54_RS01390 0.43 +0.1
302,428 + LRK54_RS01390 0.43 -2.5
302,428 + LRK54_RS01390 0.43 +0.3
302,428 + LRK54_RS01390 0.43 +1.6
302,428 + LRK54_RS01390 0.43 -0.5
302,428 + LRK54_RS01390 0.43 -0.0
302,428 + LRK54_RS01390 0.43 -1.1
302,428 + LRK54_RS01390 0.43 +0.6
302,428 + LRK54_RS01390 0.43 -0.3
302,428 + LRK54_RS01390 0.43 -0.5
302,428 + LRK54_RS01390 0.43 -0.3
302,428 + LRK54_RS01390 0.43 +0.6
302,428 + LRK54_RS01390 0.43 -0.1
302,428 + LRK54_RS01390 0.43 -0.0
302,428 + LRK54_RS01390 0.43 -0.2
302,428 + LRK54_RS01390 0.43 +0.3
302,428 + LRK54_RS01390 0.43 -0.8
302,428 + LRK54_RS01390 0.43 +1.5
302,428 + LRK54_RS01390 0.43 +0.1
302,428 + LRK54_RS01390 0.43 +0.2
302,429 - LRK54_RS01390 0.44 -0.1
302,429 - LRK54_RS01390 0.44 +1.0
302,429 - LRK54_RS01390 0.44 +0.0
302,429 - LRK54_RS01390 0.44 +0.2
302,429 - LRK54_RS01390 0.44 +0.6
302,429 - LRK54_RS01390 0.44 +1.9
302,429 - LRK54_RS01390 0.44 +2.4
302,429 - LRK54_RS01390 0.44 -0.6
302,429 - LRK54_RS01390 0.44 +0.3
302,429 - LRK54_RS01390 0.44 -1.0
302,429 - LRK54_RS01390 0.44 -0.5
302,429 - LRK54_RS01390 0.44 +0.7
302,429 - LRK54_RS01390 0.44 -0.3
302,429 - LRK54_RS01390 0.44 +0.7
302,429 - LRK54_RS01390 0.44 -0.8
302,429 - LRK54_RS01390 0.44 -1.1
302,429 - LRK54_RS01390 0.44 +0.2
302,429 - LRK54_RS01390 0.44 +0.1
302,429 - LRK54_RS01390 0.44 -0.7
302,429 - LRK54_RS01390 0.44 +0.4
302,429 - LRK54_RS01390 0.44 -0.4
302,429 - LRK54_RS01390 0.44 +0.4
302,429 - LRK54_RS01390 0.44 -0.7
302,644 + LRK54_RS01390 0.63 -1.6
302,644 + LRK54_RS01390 0.63 +0.5
302,644 + LRK54_RS01390 0.63 +0.2
302,644 + LRK54_RS01390 0.63 +0.4
302,644 + LRK54_RS01390 0.63 -1.8
302,644 + LRK54_RS01390 0.63 +0.5
302,644 + LRK54_RS01390 0.63 -0.6
302,645 - LRK54_RS01390 0.63 -0.7
302,645 - LRK54_RS01390 0.63 +0.4
302,645 - LRK54_RS01390 0.63 -0.5
302,645 - LRK54_RS01390 0.63 -0.4
302,810 + LRK54_RS01390 0.79 +0.0
302,810 + LRK54_RS01390 0.79 -0.1
302,810 + LRK54_RS01390 0.79 -0.0
302,810 + LRK54_RS01390 0.79 -0.6
302,810 + LRK54_RS01390 0.79 -0.3
302,810 + LRK54_RS01390 0.79 +0.7
302,810 + LRK54_RS01390 0.79 -2.0
302,810 + LRK54_RS01390 0.79 -0.8
302,810 + LRK54_RS01390 0.79 -0.3
302,810 + LRK54_RS01390 0.79 +0.6
302,810 + LRK54_RS01390 0.79 -0.3
302,810 + LRK54_RS01390 0.79 -0.2
302,810 + LRK54_RS01390 0.79 -0.5
302,810 + LRK54_RS01390 0.79 -0.4
302,811 - LRK54_RS01390 0.79 -0.0
302,811 - LRK54_RS01390 0.79 +0.7
302,811 - LRK54_RS01390 0.79 +0.5
302,811 - LRK54_RS01390 0.79 +1.8
302,811 - LRK54_RS01390 0.79 +0.3
302,811 - LRK54_RS01390 0.79 -0.1
302,811 - LRK54_RS01390 0.79 +0.0
302,811 - LRK54_RS01390 0.79 +0.6
302,811 - LRK54_RS01390 0.79 -1.1
302,811 - LRK54_RS01390 0.79 -0.3
302,811 - LRK54_RS01390 0.79 -1.0
302,811 - LRK54_RS01390 0.79 +0.5
302,811 - LRK54_RS01390 0.79 +0.1
302,949 + -1.0
303,148 - LRK54_RS01395 0.22 -0.0
303,148 - LRK54_RS01395 0.22 -1.3
303,402 + LRK54_RS01395 0.72 -1.5
303,585 - -0.5
303,643 + +0.4
303,643 + -1.7
303,643 + -0.4
303,643 + -1.1
303,643 + +1.3
303,643 + -0.3
303,643 + +0.5
303,643 + +0.1
303,643 + -0.0
303,643 + +0.6
303,643 + +0.2
303,643 + -0.3
303,643 + -0.6
303,643 + +0.4
303,643 + -0.6
303,643 + +0.0
303,643 + +0.2
303,643 + -1.0
303,643 + +1.2
303,643 + +0.2
303,643 + +0.0
303,644 - -0.0
303,644 - +0.3
303,644 - -0.4
303,644 - -0.5
303,644 - -1.4
303,644 - +0.1
303,644 - -0.3
303,644 - +0.0
303,644 - -0.9
303,644 - -0.6
303,644 - -1.0
303,644 - +0.9
303,644 - -0.5
303,644 - +0.4
303,644 - +0.0
303,644 - +0.2
303,644 - -0.9
303,644 - -0.2
303,644 - -0.5
303,644 - -0.3
303,644 - +0.2
303,644 - -0.1
303,644 - -0.0
303,645 + +0.0
303,645 + -0.9
303,645 + +0.6
303,645 + -0.5
303,645 + -0.1
303,646 - -0.3
303,646 - +0.1
303,646 - +0.1
303,646 - -0.3
303,646 - -0.7
303,646 - -1.2
303,655 + -0.6
303,655 + -0.5
303,655 + -0.6
303,655 + -0.5
303,655 + +0.1
303,656 - -0.4
303,656 - -0.0
303,656 - +0.4
303,656 - -0.1
303,731 + LRK54_RS01400 0.10 -0.4
303,731 + LRK54_RS01400 0.10 +0.0
303,732 - LRK54_RS01400 0.10 +0.7
303,732 - LRK54_RS01400 0.10 +0.4
303,732 - LRK54_RS01400 0.10 -0.2
304,190 + LRK54_RS01400 0.73 +0.2
304,190 + LRK54_RS01400 0.73 +0.3
304,191 - LRK54_RS01400 0.73 -0.5
304,191 - LRK54_RS01400 0.73 +0.0
304,191 - LRK54_RS01400 0.73 +0.6
304,259 + LRK54_RS01400 0.82 -0.0
304,259 + LRK54_RS01400 0.82 -0.4
304,260 - LRK54_RS01400 0.83 +0.9
304,274 + LRK54_RS01400 0.84 -0.8
304,274 + LRK54_RS01400 0.84 +0.3
304,420 + -0.6
304,496 + +0.5
304,496 + -0.4
304,497 - +0.3
304,497 - -0.2

Or see this region's nucleotide sequence