Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00340 and LRK54_RS00345 are separated by 121 nucleotides LRK54_RS00345 and LRK54_RS00350 are separated by 61 nucleotides LRK54_RS00350 and LRK54_RS00355 are separated by 91 nucleotides LRK54_RS00355 and LRK54_RS00360 are separated by 303 nucleotides
LRK54_RS00340: LRK54_RS00340 - carbon-nitrogen hydrolase, at 77,731 to 78,621
_RS00340
LRK54_RS00345: LRK54_RS00345 - TraB/GumN family protein, at 78,743 to 79,978
_RS00345
LRK54_RS00350: LRK54_RS00350 - tRNA-Leu, at 80,040 to 80,126
_RS00350
LRK54_RS00355: LRK54_RS00355 - HU family DNA-binding protein, at 80,218 to 80,598
_RS00355
LRK54_RS00360: LRK54_RS00360 - tRNA-Cys, at 80,902 to 80,975
_RS00360
Position (kb) 78
79
80 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.718 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.657 kb on + strand at 80.658 kb on - strand at 80.658 kb on - strand at 80.750 kb on + strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 78,619 + -0.6 78,619 + -0.2 78,619 + -2.3 78,619 + -1.6 78,619 + -0.2 78,620 - -0.8 78,620 - -0.6 78,620 - -0.8 78,620 - -0.7 78,620 - -0.3 78,620 - +0.2 78,620 - -0.0 78,718 + -0.0 78,830 + -1.5 78,830 + -0.2 78,830 + -0.8 78,830 + -1.5 78,830 + -0.7 78,830 + -2.7 78,830 + -1.2 78,830 + +1.1 78,830 + -2.2 78,830 + -1.5 78,830 + -1.5 78,830 + -1.6 78,830 + -0.8 78,830 + -2.5 78,830 + -1.1 78,830 + -0.6 78,831 - -1.0 78,831 - -0.3 78,831 - -0.5 78,831 - -1.0 78,831 - -1.7 78,831 - -0.3 78,831 - -1.3 78,831 - -0.5 78,831 - -2.1 78,831 - -1.4 78,831 - -0.8 78,831 - -0.9 78,831 - -0.4 78,831 - -0.5 78,831 - -0.8 78,831 - -0.3 78,831 - -2.2 78,831 - -0.4 78,831 - +0.9 79,343 + LRK54_RS00345 0.49 -0.8 79,343 + LRK54_RS00345 0.49 +0.0 79,343 + LRK54_RS00345 0.49 -0.9 79,343 + LRK54_RS00345 0.49 -1.2 79,343 + LRK54_RS00345 0.49 -0.2 79,343 + LRK54_RS00345 0.49 -1.4 79,343 + LRK54_RS00345 0.49 -2.7 79,343 + LRK54_RS00345 0.49 -0.8 79,344 - LRK54_RS00345 0.49 -0.7 79,344 - LRK54_RS00345 0.49 -0.5 79,344 - LRK54_RS00345 0.49 -0.2 79,344 - LRK54_RS00345 0.49 -1.7 79,344 - LRK54_RS00345 0.49 -2.1 79,344 - LRK54_RS00345 0.49 +0.4 79,344 - LRK54_RS00345 0.49 -2.6 79,344 - LRK54_RS00345 0.49 +0.9 79,940 + -0.5 79,940 + -4.2 79,940 + -2.3 79,940 + -2.3 79,940 + -2.1 79,940 + -0.7 79,940 + -1.6 79,941 - -1.8 79,941 - -2.3 79,941 - -1.7 79,941 - -1.4 79,941 - +0.3 79,941 - -1.1 79,941 - +0.3 79,941 - -1.3 79,941 - -1.9 80,003 + +0.4 80,003 + +0.4 80,003 + -0.0 80,003 + -0.2 80,003 + -0.1 80,003 + +0.2 80,003 + +0.1 80,003 + +0.2 80,003 + -0.1 80,003 + +1.0 80,003 + +0.4 80,003 + +0.0 80,003 + +0.8 80,003 + +0.3 80,003 + -0.0 80,003 + +0.1 80,003 + -0.5 80,003 + -0.0 80,003 + -0.4 80,003 + -1.2 80,003 + +0.4 80,003 + +0.1 80,004 - -0.2 80,004 - +0.2 80,004 - +0.4 80,004 - -0.1 80,004 - -0.2 80,004 - -1.8 80,004 - -0.3 80,004 - +1.0 80,004 - -1.6 80,004 - -0.9 80,004 - +0.3 80,004 - +0.4 80,004 - -1.0 80,004 - -0.1 80,004 - -1.3 80,004 - -0.5 80,004 - -2.3 80,004 - +0.2 80,004 - -0.1 80,004 - -0.6 80,004 - -0.5 80,004 - +0.7 80,004 - -1.2 80,004 - +1.2 80,004 - -0.1 80,616 + +1.0 80,616 + -0.6 80,616 + -0.0 80,616 + -1.2 80,616 + +0.3 80,616 + -1.2 80,616 + +0.3 80,616 + +0.9 80,616 + +0.8 80,616 + +0.4 80,616 + -0.8 80,616 + -1.2 80,616 + -0.8 80,616 + -1.1 80,616 + -1.1 80,616 + -0.0 80,616 + +1.0 80,616 + +0.0 80,616 + -0.5 80,616 + -0.9 80,616 + +0.5 80,617 - +1.6 80,617 - +2.9 80,617 - -0.1 80,617 - -0.3 80,617 - -0.4 80,617 - -1.4 80,617 - -0.6 80,617 - -1.1 80,617 - +0.6 80,617 - +0.3 80,617 - +0.5 80,617 - -2.2 80,617 - -1.1 80,617 - -0.5 80,617 - -0.4 80,617 - -0.1 80,617 - +1.4 80,617 - -0.1 80,634 + +0.7 80,634 + +0.9 80,634 + -0.3 80,634 + +1.2 80,634 + +1.0 80,634 + -0.8 80,634 + -0.1 80,634 + -0.4 80,634 + -1.1 80,634 + +0.6 80,634 + -0.3 80,634 + -0.6 80,634 + -0.9 80,634 + +0.6 80,634 + -0.1 80,634 + +0.4 80,634 + +0.5 80,635 - -1.6 80,635 - -0.9 80,635 - -0.1 80,635 - -1.1 80,635 - -1.1 80,635 - -1.5 80,635 - +1.0 80,635 - -0.4 80,635 - +0.7 80,635 - -0.5 80,635 - +0.4 80,635 - -2.0 80,635 - -0.0 80,635 - +0.4 80,635 - -0.8 80,635 - -1.1 80,657 + -1.1 80,658 - +1.1 80,658 - -1.2 80,750 + -0.4 80,751 - +0.0 80,751 - -1.5 80,751 - -1.4 80,751 - -0.3 80,751 - +0.3
Or see this region's nucleotide sequence