Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03583

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03581 and CCNA_03582 are separated by 3 nucleotidesCCNA_03582 and CCNA_03583 overlap by 4 nucleotidesCCNA_03583 and CCNA_03584 are separated by 139 nucleotidesCCNA_03584 and CCNA_03585 are separated by 79 nucleotides CCNA_03581: CCNA_03581 - transporter, drug/metabolite exporter family, at 3,737,998 to 3,738,870 _03581 CCNA_03582: CCNA_03582 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,738,874 to 3,739,671 _03582 CCNA_03583: CCNA_03583 - hypothetical protein, at 3,739,668 to 3,739,859 _03583 CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676 _03584 CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133 _03585 Position (kb) 3739 3740Strain fitness (log2 ratio) -2 -1 0 1at 3738.671 kb on - strand, within CCNA_03581at 3738.674 kb on - strand, within CCNA_03581at 3738.686 kb on + strand, within CCNA_03581at 3738.714 kb on - strand, within CCNA_03581at 3738.716 kb on + strandat 3738.716 kb on + strand, within CCNA_03581at 3738.716 kb on + strand, within CCNA_03581at 3738.716 kb on + strand, within CCNA_03581at 3738.724 kb on - strand, within CCNA_03581at 3738.724 kb on - strand, within CCNA_03581at 3738.724 kb on - strand, within CCNA_03581at 3738.724 kb on - strand, within CCNA_03581at 3738.819 kb on - strandat 3738.834 kb on - strandat 3738.854 kb on + strandat 3738.869 kb on + strandat 3738.869 kb on + strandat 3738.870 kb on - strandat 3738.872 kb on + strandat 3738.880 kb on - strandat 3739.630 kb on - strandat 3739.630 kb on - strandat 3739.642 kb on + strandat 3739.666 kb on + strandat 3739.674 kb on - strandat 3739.674 kb on - strandat 3739.753 kb on - strand, within CCNA_03583at 3739.791 kb on + strand, within CCNA_03583at 3739.798 kb on - strand, within CCNA_03583at 3739.811 kb on + strand, within CCNA_03583at 3739.811 kb on + strand, within CCNA_03583at 3739.811 kb on + strand, within CCNA_03583at 3739.811 kb on + strand, within CCNA_03583at 3739.819 kb on - strand, within CCNA_03583at 3739.824 kb on - strand, within CCNA_03583at 3739.869 kb on + strandat 3739.950 kb on + strandat 3739.950 kb on + strandat 3739.953 kb on - strandat 3739.958 kb on - strandat 3739.963 kb on - strandat 3739.980 kb on - strandat 3740.699 kb on + strandat 3740.704 kb on + strandat 3740.707 kb on - strandat 3740.753 kb on + strandat 3740.761 kb on - strandat 3740.768 kb on + strandat 3740.768 kb on + strandat 3740.776 kb on - strandat 3740.783 kb on - strandat 3740.836 kb on + strand, within CCNA_03585

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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3,738,671 - CCNA_03581 0.77 -1.9
3,738,674 - CCNA_03581 0.77 +0.3
3,738,686 + CCNA_03581 0.79 -1.7
3,738,714 - CCNA_03581 0.82 +0.5
3,738,716 + +0.2
3,738,716 + CCNA_03581 0.82 -0.6
3,738,716 + CCNA_03581 0.82 -2.7
3,738,716 + CCNA_03581 0.82 -0.8
3,738,724 - CCNA_03581 0.83 -1.3
3,738,724 - CCNA_03581 0.83 -1.2
3,738,724 - CCNA_03581 0.83 -1.5
3,738,724 - CCNA_03581 0.83 -0.1
3,738,819 - -1.4
3,738,834 - -0.4
3,738,854 + -0.9
3,738,869 + +0.3
3,738,869 + +0.9
3,738,870 - +1.5
3,738,872 + -0.7
3,738,880 - -0.8
3,739,630 - +1.5
3,739,630 - -1.1
3,739,642 + -0.3
3,739,666 + +1.0
3,739,674 - +0.7
3,739,674 - +0.5
3,739,753 - CCNA_03583 0.44 -0.2
3,739,791 + CCNA_03583 0.64 -0.3
3,739,798 - CCNA_03583 0.68 -1.1
3,739,811 + CCNA_03583 0.74 -0.9
3,739,811 + CCNA_03583 0.74 -1.9
3,739,811 + CCNA_03583 0.74 +0.5
3,739,811 + CCNA_03583 0.74 -1.7
3,739,819 - CCNA_03583 0.79 -2.3
3,739,824 - CCNA_03583 0.81 -0.9
3,739,869 + -2.1
3,739,950 + -1.4
3,739,950 + -0.7
3,739,953 - -1.5
3,739,958 - +0.0
3,739,963 - +0.3
3,739,980 - -2.0
3,740,699 + +1.3
3,740,704 + +1.5
3,740,707 - -2.2
3,740,753 + +0.6
3,740,761 - -0.1
3,740,768 + +0.8
3,740,768 + +0.9
3,740,776 - -0.3
3,740,783 - -0.0
3,740,836 + CCNA_03585 0.21 +1.0

Or see this region's nucleotide sequence