Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02702 and CCNA_02703 overlap by 1 nucleotides CCNA_02703 and CCNA_02704 are separated by 335 nucleotides
CCNA_02702: CCNA_02702 - xanthine dehydrogenase small subunit, at 2,857,314 to 2,858,762
_02702
CCNA_02703: CCNA_02703 - 5-hydroxyisourate hydrolase, at 2,858,762 to 2,859,109
_02703
CCNA_02704: CCNA_02704 - NADP-dependent malic enzyme, at 2,859,445 to 2,861,721
_02704
Position (kb)
2858
2859
2860 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2857.768 kb on + strand, within CCNA_02702 at 2857.846 kb on + strand, within CCNA_02702 at 2857.846 kb on + strand, within CCNA_02702 at 2857.895 kb on + strand at 2857.900 kb on + strand, within CCNA_02702 at 2857.926 kb on - strand, within CCNA_02702 at 2857.928 kb on + strand, within CCNA_02702 at 2857.936 kb on - strand, within CCNA_02702 at 2857.936 kb on - strand, within CCNA_02702 at 2857.936 kb on - strand, within CCNA_02702 at 2857.948 kb on - strand, within CCNA_02702 at 2857.974 kb on - strand, within CCNA_02702 at 2857.976 kb on + strand, within CCNA_02702 at 2857.976 kb on + strand, within CCNA_02702 at 2857.997 kb on - strand, within CCNA_02702 at 2858.003 kb on - strand, within CCNA_02702 at 2858.006 kb on - strand, within CCNA_02702 at 2858.016 kb on - strand, within CCNA_02702 at 2858.043 kb on + strand, within CCNA_02702 at 2858.081 kb on + strand, within CCNA_02702 at 2858.089 kb on - strand, within CCNA_02702 at 2858.089 kb on - strand, within CCNA_02702 at 2858.089 kb on - strand, within CCNA_02702 at 2858.119 kb on + strand, within CCNA_02702 at 2858.119 kb on + strand, within CCNA_02702 at 2858.148 kb on - strand, within CCNA_02702 at 2858.219 kb on - strand, within CCNA_02702 at 2858.220 kb on - strand, within CCNA_02702 at 2858.230 kb on - strand, within CCNA_02702 at 2858.274 kb on - strand, within CCNA_02702 at 2858.289 kb on - strand, within CCNA_02702 at 2858.290 kb on + strand, within CCNA_02702 at 2858.311 kb on - strand, within CCNA_02702 at 2858.342 kb on - strand, within CCNA_02702 at 2858.370 kb on + strand, within CCNA_02702 at 2858.385 kb on + strand, within CCNA_02702 at 2858.393 kb on - strand, within CCNA_02702 at 2858.393 kb on - strand, within CCNA_02702 at 2858.454 kb on + strand, within CCNA_02702 at 2858.454 kb on + strand, within CCNA_02702 at 2858.462 kb on - strand, within CCNA_02702 at 2858.474 kb on - strand, within CCNA_02702 at 2858.474 kb on - strand, within CCNA_02702 at 2858.485 kb on - strand, within CCNA_02702 at 2858.485 kb on - strand, within CCNA_02702 at 2858.490 kb on - strand, within CCNA_02702 at 2858.547 kb on - strand, within CCNA_02702 at 2858.549 kb on - strand, within CCNA_02702 at 2858.564 kb on - strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.614 kb on - strand, within CCNA_02702 at 2858.644 kb on + strand at 2858.648 kb on - strand at 2858.688 kb on - strand at 2858.688 kb on - strand at 2858.688 kb on - strand at 2858.697 kb on + strand at 2858.718 kb on - strand at 2858.726 kb on - strand at 2858.814 kb on + strand, within CCNA_02703 at 2858.814 kb on + strand, within CCNA_02703 at 2858.822 kb on - strand, within CCNA_02703 at 2858.822 kb on - strand, within CCNA_02703 at 2858.822 kb on - strand, within CCNA_02703 at 2858.833 kb on - strand, within CCNA_02703 at 2858.862 kb on + strand, within CCNA_02703 at 2858.890 kb on + strand at 2858.898 kb on + strand, within CCNA_02703 at 2858.906 kb on + strand, within CCNA_02703 at 2858.951 kb on + strand, within CCNA_02703 at 2858.953 kb on - strand, within CCNA_02703 at 2858.999 kb on - strand, within CCNA_02703 at 2859.015 kb on - strand, within CCNA_02703 at 2859.080 kb on + strand at 2859.158 kb on + strand at 2859.163 kb on + strand at 2859.196 kb on - strand at 2859.342 kb on + strand at 2859.350 kb on - strand at 2859.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 2,857,768 + CCNA_02702 0.31 -0.5 2,857,846 + CCNA_02702 0.37 -1.3 2,857,846 + CCNA_02702 0.37 -0.8 2,857,895 + +1.7 2,857,900 + CCNA_02702 0.40 +1.3 2,857,926 - CCNA_02702 0.42 +1.3 2,857,928 + CCNA_02702 0.42 +1.7 2,857,936 - CCNA_02702 0.43 +1.6 2,857,936 - CCNA_02702 0.43 +1.6 2,857,936 - CCNA_02702 0.43 +1.0 2,857,948 - CCNA_02702 0.44 -0.1 2,857,974 - CCNA_02702 0.46 +1.2 2,857,976 + CCNA_02702 0.46 -0.1 2,857,976 + CCNA_02702 0.46 -1.7 2,857,997 - CCNA_02702 0.47 +0.7 2,858,003 - CCNA_02702 0.48 +0.9 2,858,006 - CCNA_02702 0.48 +0.7 2,858,016 - CCNA_02702 0.48 +0.8 2,858,043 + CCNA_02702 0.50 -0.8 2,858,081 + CCNA_02702 0.53 +1.4 2,858,089 - CCNA_02702 0.53 +1.1 2,858,089 - CCNA_02702 0.53 -0.0 2,858,089 - CCNA_02702 0.53 +0.4 2,858,119 + CCNA_02702 0.56 -0.1 2,858,119 + CCNA_02702 0.56 -0.9 2,858,148 - CCNA_02702 0.58 +1.0 2,858,219 - CCNA_02702 0.62 +0.0 2,858,220 - CCNA_02702 0.63 +0.8 2,858,230 - CCNA_02702 0.63 +0.2 2,858,274 - CCNA_02702 0.66 +1.3 2,858,289 - CCNA_02702 0.67 +0.3 2,858,290 + CCNA_02702 0.67 -1.9 2,858,311 - CCNA_02702 0.69 +1.2 2,858,342 - CCNA_02702 0.71 +1.4 2,858,370 + CCNA_02702 0.73 -1.0 2,858,385 + CCNA_02702 0.74 -1.6 2,858,393 - CCNA_02702 0.74 +0.3 2,858,393 - CCNA_02702 0.74 +1.1 2,858,454 + CCNA_02702 0.79 -0.5 2,858,454 + CCNA_02702 0.79 +1.7 2,858,462 - CCNA_02702 0.79 +0.5 2,858,474 - CCNA_02702 0.80 +1.7 2,858,474 - CCNA_02702 0.80 +1.1 2,858,485 - CCNA_02702 0.81 +0.7 2,858,485 - CCNA_02702 0.81 +0.5 2,858,490 - CCNA_02702 0.81 +0.7 2,858,547 - CCNA_02702 0.85 +1.0 2,858,549 - CCNA_02702 0.85 +0.8 2,858,564 - CCNA_02702 0.86 +0.5 2,858,601 + CCNA_02702 0.89 +0.5 2,858,601 + CCNA_02702 0.89 -1.3 2,858,601 + CCNA_02702 0.89 -2.3 2,858,601 + CCNA_02702 0.89 -0.4 2,858,609 - CCNA_02702 0.89 +1.0 2,858,609 - CCNA_02702 0.89 -0.2 2,858,609 - CCNA_02702 0.89 +1.6 2,858,614 - CCNA_02702 0.90 +1.1 2,858,644 + +0.2 2,858,648 - +0.7 2,858,688 - +1.2 2,858,688 - +0.5 2,858,688 - -0.6 2,858,697 + +1.1 2,858,718 - +1.6 2,858,726 - +0.8 2,858,814 + CCNA_02703 0.15 -0.8 2,858,814 + CCNA_02703 0.15 -0.6 2,858,822 - CCNA_02703 0.17 +1.5 2,858,822 - CCNA_02703 0.17 +0.6 2,858,822 - CCNA_02703 0.17 -0.0 2,858,833 - CCNA_02703 0.20 +1.7 2,858,862 + CCNA_02703 0.29 -0.6 2,858,890 + +1.1 2,858,898 + CCNA_02703 0.39 -0.2 2,858,906 + CCNA_02703 0.41 -1.0 2,858,951 + CCNA_02703 0.54 -0.1 2,858,953 - CCNA_02703 0.55 +0.7 2,858,999 - CCNA_02703 0.68 +1.7 2,859,015 - CCNA_02703 0.73 -1.2 2,859,080 + +1.8 2,859,158 + -1.0 2,859,163 + -2.1 2,859,196 - -0.3 2,859,342 + -1.7 2,859,350 - -1.0 2,859,428 + -1.9
Or see this region's nucleotide sequence