Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02576 and CCNA_02577 are separated by 50 nucleotides CCNA_02577 and CCNA_02578 are separated by 231 nucleotides CCNA_02578 and CCNA_02579 are separated by 86 nucleotides
CCNA_02576: CCNA_02576 - phosphoribosylamidoimidazole-succinocarboxamide synthase, at 2,727,918 to 2,728,676
_02576
CCNA_02577: CCNA_02577 - phosphoribosylformylglycinamidine synthase, purS component, at 2,728,727 to 2,728,966
_02577
CCNA_02578: CCNA_02578 - TetR-family transcriptional regulator, at 2,729,198 to 2,729,842
_02578
CCNA_02579: CCNA_02579 - cytochrome P450, at 2,729,929 to 2,731,203
_02579
Position (kb)
2728
2729 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2727.729 kb on + strand at 2727.756 kb on - strand at 2727.808 kb on + strand at 2727.808 kb on + strand at 2727.808 kb on + strand at 2727.815 kb on + strand at 2727.832 kb on + strand at 2727.832 kb on + strand at 2727.868 kb on + strand at 2727.868 kb on + strand at 2727.873 kb on + strand at 2727.953 kb on + strand at 2727.953 kb on + strand at 2727.973 kb on + strand at 2727.982 kb on + strand at 2728.020 kb on + strand, within CCNA_02576 at 2728.034 kb on + strand, within CCNA_02576 at 2728.042 kb on - strand, within CCNA_02576 at 2728.042 kb on - strand, within CCNA_02576 at 2728.047 kb on + strand, within CCNA_02576 at 2728.088 kb on + strand, within CCNA_02576 at 2728.088 kb on + strand, within CCNA_02576 at 2728.088 kb on + strand, within CCNA_02576 at 2728.088 kb on + strand, within CCNA_02576 at 2728.096 kb on - strand, within CCNA_02576 at 2728.160 kb on + strand, within CCNA_02576 at 2728.160 kb on + strand, within CCNA_02576 at 2728.168 kb on - strand, within CCNA_02576 at 2728.170 kb on + strand, within CCNA_02576 at 2728.197 kb on + strand, within CCNA_02576 at 2728.210 kb on + strand at 2728.215 kb on + strand, within CCNA_02576 at 2728.215 kb on + strand, within CCNA_02576 at 2728.236 kb on + strand, within CCNA_02576 at 2728.249 kb on - strand, within CCNA_02576 at 2728.271 kb on + strand, within CCNA_02576 at 2728.277 kb on - strand, within CCNA_02576 at 2728.298 kb on + strand, within CCNA_02576 at 2728.327 kb on + strand, within CCNA_02576 at 2728.340 kb on + strand, within CCNA_02576 at 2728.359 kb on - strand, within CCNA_02576 at 2728.376 kb on + strand, within CCNA_02576 at 2728.429 kb on + strand, within CCNA_02576 at 2728.437 kb on - strand, within CCNA_02576 at 2728.451 kb on + strand, within CCNA_02576 at 2728.453 kb on - strand, within CCNA_02576 at 2728.453 kb on - strand, within CCNA_02576 at 2728.465 kb on - strand, within CCNA_02576 at 2728.489 kb on + strand, within CCNA_02576 at 2728.503 kb on + strand, within CCNA_02576 at 2728.512 kb on + strand, within CCNA_02576 at 2728.549 kb on + strand, within CCNA_02576 at 2728.560 kb on + strand, within CCNA_02576 at 2728.584 kb on - strand at 2728.586 kb on + strand, within CCNA_02576 at 2728.614 kb on - strand at 2728.673 kb on + strand at 2728.772 kb on + strand, within CCNA_02577 at 2728.772 kb on + strand, within CCNA_02577 at 2728.822 kb on + strand, within CCNA_02577 at 2728.823 kb on - strand, within CCNA_02577 at 2728.830 kb on - strand, within CCNA_02577 at 2728.897 kb on + strand, within CCNA_02577 at 2728.905 kb on - strand, within CCNA_02577 at 2728.905 kb on - strand, within CCNA_02577 at 2728.905 kb on - strand, within CCNA_02577 at 2728.942 kb on - strand, within CCNA_02577 at 2728.989 kb on + strand at 2728.996 kb on + strand at 2729.029 kb on - strand at 2729.035 kb on + strand at 2729.044 kb on + strand at 2729.067 kb on - strand at 2729.077 kb on + strand at 2729.085 kb on - strand at 2729.085 kb on - strand at 2729.092 kb on + strand at 2729.110 kb on - strand at 2729.128 kb on + strand at 2729.163 kb on + strand at 2729.171 kb on - strand at 2729.185 kb on + strand at 2729.192 kb on - strand at 2729.195 kb on + strand at 2729.203 kb on - strand at 2729.250 kb on + strand at 2729.368 kb on + strand, within CCNA_02578 at 2729.370 kb on + strand, within CCNA_02578 at 2729.376 kb on + strand, within CCNA_02578 at 2729.384 kb on - strand, within CCNA_02578 at 2729.416 kb on + strand, within CCNA_02578 at 2729.421 kb on + strand, within CCNA_02578 at 2729.429 kb on - strand, within CCNA_02578 at 2729.434 kb on - strand, within CCNA_02578 at 2729.438 kb on + strand, within CCNA_02578 at 2729.438 kb on + strand, within CCNA_02578 at 2729.444 kb on - strand, within CCNA_02578 at 2729.446 kb on - strand, within CCNA_02578 at 2729.455 kb on + strand, within CCNA_02578 at 2729.455 kb on + strand, within CCNA_02578 at 2729.463 kb on - strand, within CCNA_02578 at 2729.463 kb on - strand, within CCNA_02578 at 2729.463 kb on - strand, within CCNA_02578 at 2729.463 kb on - strand, within CCNA_02578 at 2729.507 kb on - strand, within CCNA_02578 at 2729.516 kb on - strand, within CCNA_02578 at 2729.528 kb on + strand, within CCNA_02578 at 2729.528 kb on + strand, within CCNA_02578 at 2729.528 kb on + strand, within CCNA_02578 at 2729.528 kb on + strand, within CCNA_02578 at 2729.576 kb on - strand, within CCNA_02578 at 2729.630 kb on + strand, within CCNA_02578 at 2729.639 kb on - strand, within CCNA_02578 at 2729.653 kb on + strand, within CCNA_02578 at 2729.653 kb on + strand, within CCNA_02578 at 2729.658 kb on + strand, within CCNA_02578 at 2729.661 kb on - strand at 2729.661 kb on - strand, within CCNA_02578 at 2729.687 kb on + strand, within CCNA_02578 at 2729.687 kb on + strand, within CCNA_02578 at 2729.687 kb on + strand, within CCNA_02578 at 2729.687 kb on + strand, within CCNA_02578 at 2729.695 kb on - strand, within CCNA_02578 at 2729.713 kb on + strand, within CCNA_02578 at 2729.752 kb on + strand, within CCNA_02578 at 2729.753 kb on - strand, within CCNA_02578 at 2729.763 kb on + strand, within CCNA_02578 at 2729.778 kb on + strand at 2729.786 kb on - strand at 2729.813 kb on - strand at 2729.824 kb on + strand at 2729.900 kb on - strand at 2729.912 kb on - strand at 2729.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 2,727,729 + -0.9 2,727,756 - +0.3 2,727,808 + +0.2 2,727,808 + +1.0 2,727,808 + -1.7 2,727,815 + +1.9 2,727,832 + +0.3 2,727,832 + +1.3 2,727,868 + -0.9 2,727,868 + +0.1 2,727,873 + -0.4 2,727,953 + -1.0 2,727,953 + +0.1 2,727,973 + +0.4 2,727,982 + -1.2 2,728,020 + CCNA_02576 0.13 -1.6 2,728,034 + CCNA_02576 0.15 -0.8 2,728,042 - CCNA_02576 0.16 -0.9 2,728,042 - CCNA_02576 0.16 -2.0 2,728,047 + CCNA_02576 0.17 +1.3 2,728,088 + CCNA_02576 0.22 +1.4 2,728,088 + CCNA_02576 0.22 +1.3 2,728,088 + CCNA_02576 0.22 +1.0 2,728,088 + CCNA_02576 0.22 +1.2 2,728,096 - CCNA_02576 0.23 -1.0 2,728,160 + CCNA_02576 0.32 +0.5 2,728,160 + CCNA_02576 0.32 +1.6 2,728,168 - CCNA_02576 0.33 +1.1 2,728,170 + CCNA_02576 0.33 +1.2 2,728,197 + CCNA_02576 0.37 +0.7 2,728,210 + +1.1 2,728,215 + CCNA_02576 0.39 -0.6 2,728,215 + CCNA_02576 0.39 -1.1 2,728,236 + CCNA_02576 0.42 +0.2 2,728,249 - CCNA_02576 0.44 -0.6 2,728,271 + CCNA_02576 0.47 +1.4 2,728,277 - CCNA_02576 0.47 +0.2 2,728,298 + CCNA_02576 0.50 +1.7 2,728,327 + CCNA_02576 0.54 +1.4 2,728,340 + CCNA_02576 0.56 +1.3 2,728,359 - CCNA_02576 0.58 -1.3 2,728,376 + CCNA_02576 0.60 +1.7 2,728,429 + CCNA_02576 0.67 +1.6 2,728,437 - CCNA_02576 0.68 -1.5 2,728,451 + CCNA_02576 0.70 +1.6 2,728,453 - CCNA_02576 0.70 -2.4 2,728,453 - CCNA_02576 0.70 -1.4 2,728,465 - CCNA_02576 0.72 -0.6 2,728,489 + CCNA_02576 0.75 +1.4 2,728,503 + CCNA_02576 0.77 +1.7 2,728,512 + CCNA_02576 0.78 +1.7 2,728,549 + CCNA_02576 0.83 +1.6 2,728,560 + CCNA_02576 0.85 +1.3 2,728,584 - +0.7 2,728,586 + CCNA_02576 0.88 +1.6 2,728,614 - -1.8 2,728,673 + +2.4 2,728,772 + CCNA_02577 0.19 -0.8 2,728,772 + CCNA_02577 0.19 -2.7 2,728,822 + CCNA_02577 0.40 -0.1 2,728,823 - CCNA_02577 0.40 -1.1 2,728,830 - CCNA_02577 0.43 -2.2 2,728,897 + CCNA_02577 0.71 -2.4 2,728,905 - CCNA_02577 0.74 -1.1 2,728,905 - CCNA_02577 0.74 -0.3 2,728,905 - CCNA_02577 0.74 -1.4 2,728,942 - CCNA_02577 0.90 +1.0 2,728,989 + +1.1 2,728,996 + +1.5 2,729,029 - -0.4 2,729,035 + +0.9 2,729,044 + +0.5 2,729,067 - -1.3 2,729,077 + +1.6 2,729,085 - +0.5 2,729,085 - -0.6 2,729,092 + +1.4 2,729,110 - +1.1 2,729,128 + +1.3 2,729,163 + +0.3 2,729,171 - +0.2 2,729,185 + +1.6 2,729,192 - +0.6 2,729,195 + +0.8 2,729,203 - -0.2 2,729,250 + +3.1 2,729,368 + CCNA_02578 0.26 -1.4 2,729,370 + CCNA_02578 0.27 +2.4 2,729,376 + CCNA_02578 0.28 +1.8 2,729,384 - CCNA_02578 0.29 +0.6 2,729,416 + CCNA_02578 0.34 -1.3 2,729,421 + CCNA_02578 0.35 -1.2 2,729,429 - CCNA_02578 0.36 +0.1 2,729,434 - CCNA_02578 0.37 +1.1 2,729,438 + CCNA_02578 0.37 -0.1 2,729,438 + CCNA_02578 0.37 -2.0 2,729,444 - CCNA_02578 0.38 +1.5 2,729,446 - CCNA_02578 0.38 +0.4 2,729,455 + CCNA_02578 0.40 -2.0 2,729,455 + CCNA_02578 0.40 -0.8 2,729,463 - CCNA_02578 0.41 -0.1 2,729,463 - CCNA_02578 0.41 +1.6 2,729,463 - CCNA_02578 0.41 +0.8 2,729,463 - CCNA_02578 0.41 +0.3 2,729,507 - CCNA_02578 0.48 +0.8 2,729,516 - CCNA_02578 0.49 +1.0 2,729,528 + CCNA_02578 0.51 -1.5 2,729,528 + CCNA_02578 0.51 +0.7 2,729,528 + CCNA_02578 0.51 +0.4 2,729,528 + CCNA_02578 0.51 -0.5 2,729,576 - CCNA_02578 0.59 +0.9 2,729,630 + CCNA_02578 0.67 +0.1 2,729,639 - CCNA_02578 0.68 +1.6 2,729,653 + CCNA_02578 0.71 +0.2 2,729,653 + CCNA_02578 0.71 -1.6 2,729,658 + CCNA_02578 0.71 -1.3 2,729,661 - +0.4 2,729,661 - CCNA_02578 0.72 +1.4 2,729,687 + CCNA_02578 0.76 +1.1 2,729,687 + CCNA_02578 0.76 -0.7 2,729,687 + CCNA_02578 0.76 +0.4 2,729,687 + CCNA_02578 0.76 -0.8 2,729,695 - CCNA_02578 0.77 +1.6 2,729,713 + CCNA_02578 0.80 -0.7 2,729,752 + CCNA_02578 0.86 -1.1 2,729,753 - CCNA_02578 0.86 +1.5 2,729,763 + CCNA_02578 0.88 -2.1 2,729,778 + +2.2 2,729,786 - -0.4 2,729,813 - +0.6 2,729,824 + -0.1 2,729,900 - +0.6 2,729,912 - -0.4 2,729,957 - +2.3
Or see this region's nucleotide sequence