Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02577

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02576 and CCNA_02577 are separated by 50 nucleotidesCCNA_02577 and CCNA_02578 are separated by 231 nucleotidesCCNA_02578 and CCNA_02579 are separated by 86 nucleotides CCNA_02576: CCNA_02576 - phosphoribosylamidoimidazole-succinocarboxamide synthase, at 2,727,918 to 2,728,676 _02576 CCNA_02577: CCNA_02577 - phosphoribosylformylglycinamidine synthase, purS component, at 2,728,727 to 2,728,966 _02577 CCNA_02578: CCNA_02578 - TetR-family transcriptional regulator, at 2,729,198 to 2,729,842 _02578 CCNA_02579: CCNA_02579 - cytochrome P450, at 2,729,929 to 2,731,203 _02579 Position (kb) 2728 2729Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2727.729 kb on + strandat 2727.756 kb on - strandat 2727.808 kb on + strandat 2727.808 kb on + strandat 2727.808 kb on + strandat 2727.815 kb on + strandat 2727.832 kb on + strandat 2727.832 kb on + strandat 2727.868 kb on + strandat 2727.868 kb on + strandat 2727.873 kb on + strandat 2727.953 kb on + strandat 2727.953 kb on + strandat 2727.973 kb on + strandat 2727.982 kb on + strandat 2728.020 kb on + strand, within CCNA_02576at 2728.034 kb on + strand, within CCNA_02576at 2728.042 kb on - strand, within CCNA_02576at 2728.042 kb on - strand, within CCNA_02576at 2728.047 kb on + strand, within CCNA_02576at 2728.088 kb on + strand, within CCNA_02576at 2728.088 kb on + strand, within CCNA_02576at 2728.088 kb on + strand, within CCNA_02576at 2728.088 kb on + strand, within CCNA_02576at 2728.096 kb on - strand, within CCNA_02576at 2728.160 kb on + strand, within CCNA_02576at 2728.160 kb on + strand, within CCNA_02576at 2728.168 kb on - strand, within CCNA_02576at 2728.170 kb on + strand, within CCNA_02576at 2728.197 kb on + strand, within CCNA_02576at 2728.210 kb on + strandat 2728.215 kb on + strand, within CCNA_02576at 2728.215 kb on + strand, within CCNA_02576at 2728.236 kb on + strand, within CCNA_02576at 2728.249 kb on - strand, within CCNA_02576at 2728.271 kb on + strand, within CCNA_02576at 2728.277 kb on - strand, within CCNA_02576at 2728.298 kb on + strand, within CCNA_02576at 2728.327 kb on + strand, within CCNA_02576at 2728.340 kb on + strand, within CCNA_02576at 2728.359 kb on - strand, within CCNA_02576at 2728.376 kb on + strand, within CCNA_02576at 2728.429 kb on + strand, within CCNA_02576at 2728.437 kb on - strand, within CCNA_02576at 2728.451 kb on + strand, within CCNA_02576at 2728.453 kb on - strand, within CCNA_02576at 2728.453 kb on - strand, within CCNA_02576at 2728.465 kb on - strand, within CCNA_02576at 2728.489 kb on + strand, within CCNA_02576at 2728.503 kb on + strand, within CCNA_02576at 2728.512 kb on + strand, within CCNA_02576at 2728.549 kb on + strand, within CCNA_02576at 2728.560 kb on + strand, within CCNA_02576at 2728.584 kb on - strandat 2728.586 kb on + strand, within CCNA_02576at 2728.614 kb on - strandat 2728.673 kb on + strandat 2728.772 kb on + strand, within CCNA_02577at 2728.772 kb on + strand, within CCNA_02577at 2728.822 kb on + strand, within CCNA_02577at 2728.823 kb on - strand, within CCNA_02577at 2728.830 kb on - strand, within CCNA_02577at 2728.897 kb on + strand, within CCNA_02577at 2728.905 kb on - strand, within CCNA_02577at 2728.905 kb on - strand, within CCNA_02577at 2728.905 kb on - strand, within CCNA_02577at 2728.942 kb on - strand, within CCNA_02577at 2728.989 kb on + strandat 2728.996 kb on + strandat 2729.029 kb on - strandat 2729.035 kb on + strandat 2729.044 kb on + strandat 2729.067 kb on - strandat 2729.077 kb on + strandat 2729.085 kb on - strandat 2729.085 kb on - strandat 2729.092 kb on + strandat 2729.110 kb on - strandat 2729.128 kb on + strandat 2729.163 kb on + strandat 2729.171 kb on - strandat 2729.185 kb on + strandat 2729.192 kb on - strandat 2729.195 kb on + strandat 2729.203 kb on - strandat 2729.250 kb on + strandat 2729.368 kb on + strand, within CCNA_02578at 2729.370 kb on + strand, within CCNA_02578at 2729.376 kb on + strand, within CCNA_02578at 2729.384 kb on - strand, within CCNA_02578at 2729.416 kb on + strand, within CCNA_02578at 2729.421 kb on + strand, within CCNA_02578at 2729.429 kb on - strand, within CCNA_02578at 2729.434 kb on - strand, within CCNA_02578at 2729.438 kb on + strand, within CCNA_02578at 2729.438 kb on + strand, within CCNA_02578at 2729.444 kb on - strand, within CCNA_02578at 2729.446 kb on - strand, within CCNA_02578at 2729.455 kb on + strand, within CCNA_02578at 2729.455 kb on + strand, within CCNA_02578at 2729.463 kb on - strand, within CCNA_02578at 2729.463 kb on - strand, within CCNA_02578at 2729.463 kb on - strand, within CCNA_02578at 2729.463 kb on - strand, within CCNA_02578at 2729.507 kb on - strand, within CCNA_02578at 2729.516 kb on - strand, within CCNA_02578at 2729.528 kb on + strand, within CCNA_02578at 2729.528 kb on + strand, within CCNA_02578at 2729.528 kb on + strand, within CCNA_02578at 2729.528 kb on + strand, within CCNA_02578at 2729.576 kb on - strand, within CCNA_02578at 2729.630 kb on + strand, within CCNA_02578at 2729.639 kb on - strand, within CCNA_02578at 2729.653 kb on + strand, within CCNA_02578at 2729.653 kb on + strand, within CCNA_02578at 2729.658 kb on + strand, within CCNA_02578at 2729.661 kb on - strandat 2729.661 kb on - strand, within CCNA_02578at 2729.687 kb on + strand, within CCNA_02578at 2729.687 kb on + strand, within CCNA_02578at 2729.687 kb on + strand, within CCNA_02578at 2729.687 kb on + strand, within CCNA_02578at 2729.695 kb on - strand, within CCNA_02578at 2729.713 kb on + strand, within CCNA_02578at 2729.752 kb on + strand, within CCNA_02578at 2729.753 kb on - strand, within CCNA_02578at 2729.763 kb on + strand, within CCNA_02578at 2729.778 kb on + strandat 2729.786 kb on - strandat 2729.813 kb on - strandat 2729.824 kb on + strandat 2729.900 kb on - strandat 2729.912 kb on - strandat 2729.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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2,727,729 + -0.9
2,727,756 - +0.3
2,727,808 + +0.2
2,727,808 + +1.0
2,727,808 + -1.7
2,727,815 + +1.9
2,727,832 + +0.3
2,727,832 + +1.3
2,727,868 + -0.9
2,727,868 + +0.1
2,727,873 + -0.4
2,727,953 + -1.0
2,727,953 + +0.1
2,727,973 + +0.4
2,727,982 + -1.2
2,728,020 + CCNA_02576 0.13 -1.6
2,728,034 + CCNA_02576 0.15 -0.8
2,728,042 - CCNA_02576 0.16 -0.9
2,728,042 - CCNA_02576 0.16 -2.0
2,728,047 + CCNA_02576 0.17 +1.3
2,728,088 + CCNA_02576 0.22 +1.4
2,728,088 + CCNA_02576 0.22 +1.3
2,728,088 + CCNA_02576 0.22 +1.0
2,728,088 + CCNA_02576 0.22 +1.2
2,728,096 - CCNA_02576 0.23 -1.0
2,728,160 + CCNA_02576 0.32 +0.5
2,728,160 + CCNA_02576 0.32 +1.6
2,728,168 - CCNA_02576 0.33 +1.1
2,728,170 + CCNA_02576 0.33 +1.2
2,728,197 + CCNA_02576 0.37 +0.7
2,728,210 + +1.1
2,728,215 + CCNA_02576 0.39 -0.6
2,728,215 + CCNA_02576 0.39 -1.1
2,728,236 + CCNA_02576 0.42 +0.2
2,728,249 - CCNA_02576 0.44 -0.6
2,728,271 + CCNA_02576 0.47 +1.4
2,728,277 - CCNA_02576 0.47 +0.2
2,728,298 + CCNA_02576 0.50 +1.7
2,728,327 + CCNA_02576 0.54 +1.4
2,728,340 + CCNA_02576 0.56 +1.3
2,728,359 - CCNA_02576 0.58 -1.3
2,728,376 + CCNA_02576 0.60 +1.7
2,728,429 + CCNA_02576 0.67 +1.6
2,728,437 - CCNA_02576 0.68 -1.5
2,728,451 + CCNA_02576 0.70 +1.6
2,728,453 - CCNA_02576 0.70 -2.4
2,728,453 - CCNA_02576 0.70 -1.4
2,728,465 - CCNA_02576 0.72 -0.6
2,728,489 + CCNA_02576 0.75 +1.4
2,728,503 + CCNA_02576 0.77 +1.7
2,728,512 + CCNA_02576 0.78 +1.7
2,728,549 + CCNA_02576 0.83 +1.6
2,728,560 + CCNA_02576 0.85 +1.3
2,728,584 - +0.7
2,728,586 + CCNA_02576 0.88 +1.6
2,728,614 - -1.8
2,728,673 + +2.4
2,728,772 + CCNA_02577 0.19 -0.8
2,728,772 + CCNA_02577 0.19 -2.7
2,728,822 + CCNA_02577 0.40 -0.1
2,728,823 - CCNA_02577 0.40 -1.1
2,728,830 - CCNA_02577 0.43 -2.2
2,728,897 + CCNA_02577 0.71 -2.4
2,728,905 - CCNA_02577 0.74 -1.1
2,728,905 - CCNA_02577 0.74 -0.3
2,728,905 - CCNA_02577 0.74 -1.4
2,728,942 - CCNA_02577 0.90 +1.0
2,728,989 + +1.1
2,728,996 + +1.5
2,729,029 - -0.4
2,729,035 + +0.9
2,729,044 + +0.5
2,729,067 - -1.3
2,729,077 + +1.6
2,729,085 - +0.5
2,729,085 - -0.6
2,729,092 + +1.4
2,729,110 - +1.1
2,729,128 + +1.3
2,729,163 + +0.3
2,729,171 - +0.2
2,729,185 + +1.6
2,729,192 - +0.6
2,729,195 + +0.8
2,729,203 - -0.2
2,729,250 + +3.1
2,729,368 + CCNA_02578 0.26 -1.4
2,729,370 + CCNA_02578 0.27 +2.4
2,729,376 + CCNA_02578 0.28 +1.8
2,729,384 - CCNA_02578 0.29 +0.6
2,729,416 + CCNA_02578 0.34 -1.3
2,729,421 + CCNA_02578 0.35 -1.2
2,729,429 - CCNA_02578 0.36 +0.1
2,729,434 - CCNA_02578 0.37 +1.1
2,729,438 + CCNA_02578 0.37 -0.1
2,729,438 + CCNA_02578 0.37 -2.0
2,729,444 - CCNA_02578 0.38 +1.5
2,729,446 - CCNA_02578 0.38 +0.4
2,729,455 + CCNA_02578 0.40 -2.0
2,729,455 + CCNA_02578 0.40 -0.8
2,729,463 - CCNA_02578 0.41 -0.1
2,729,463 - CCNA_02578 0.41 +1.6
2,729,463 - CCNA_02578 0.41 +0.8
2,729,463 - CCNA_02578 0.41 +0.3
2,729,507 - CCNA_02578 0.48 +0.8
2,729,516 - CCNA_02578 0.49 +1.0
2,729,528 + CCNA_02578 0.51 -1.5
2,729,528 + CCNA_02578 0.51 +0.7
2,729,528 + CCNA_02578 0.51 +0.4
2,729,528 + CCNA_02578 0.51 -0.5
2,729,576 - CCNA_02578 0.59 +0.9
2,729,630 + CCNA_02578 0.67 +0.1
2,729,639 - CCNA_02578 0.68 +1.6
2,729,653 + CCNA_02578 0.71 +0.2
2,729,653 + CCNA_02578 0.71 -1.6
2,729,658 + CCNA_02578 0.71 -1.3
2,729,661 - +0.4
2,729,661 - CCNA_02578 0.72 +1.4
2,729,687 + CCNA_02578 0.76 +1.1
2,729,687 + CCNA_02578 0.76 -0.7
2,729,687 + CCNA_02578 0.76 +0.4
2,729,687 + CCNA_02578 0.76 -0.8
2,729,695 - CCNA_02578 0.77 +1.6
2,729,713 + CCNA_02578 0.80 -0.7
2,729,752 + CCNA_02578 0.86 -1.1
2,729,753 - CCNA_02578 0.86 +1.5
2,729,763 + CCNA_02578 0.88 -2.1
2,729,778 + +2.2
2,729,786 - -0.4
2,729,813 - +0.6
2,729,824 + -0.1
2,729,900 - +0.6
2,729,912 - -0.4
2,729,957 - +2.3

Or see this region's nucleotide sequence