Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02300

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02298 and CCNA_02299 are separated by 58 nucleotidesCCNA_02299 and CCNA_02300 overlap by 4 nucleotidesCCNA_02300 and CCNA_02301 overlap by 4 nucleotidesCCNA_02301 and CCNA_02302 overlap by 4 nucleotides CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762 _02298 CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528 _02299 CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418 _02300 CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032 _02301 CCNA_02302: CCNA_02302 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,448,029 to 2,448,739 _02302 Position (kb) 2446 2447 2448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2445.595 kb on - strand, within CCNA_02298at 2445.607 kb on + strand, within CCNA_02298at 2445.614 kb on - strand, within CCNA_02298at 2445.615 kb on - strand, within CCNA_02298at 2445.691 kb on - strandat 2445.717 kb on + strandat 2445.735 kb on - strandat 2445.831 kb on + strandat 2445.836 kb on + strandat 2445.841 kb on + strandat 2445.844 kb on - strandat 2445.844 kb on - strandat 2445.868 kb on + strandat 2445.991 kb on + strand, within CCNA_02299at 2446.042 kb on + strand, within CCNA_02299at 2446.047 kb on + strand, within CCNA_02299at 2446.071 kb on + strand, within CCNA_02299at 2446.165 kb on + strand, within CCNA_02299at 2446.220 kb on + strand, within CCNA_02299at 2446.220 kb on + strand, within CCNA_02299at 2446.220 kb on + strand, within CCNA_02299at 2446.220 kb on + strand, within CCNA_02299at 2446.313 kb on + strand, within CCNA_02299at 2446.406 kb on - strand, within CCNA_02299at 2446.422 kb on + strand, within CCNA_02299at 2446.422 kb on + strand, within CCNA_02299at 2446.461 kb on - strandat 2446.511 kb on - strandat 2446.688 kb on - strand, within CCNA_02300at 2446.864 kb on + strand, within CCNA_02300at 2447.140 kb on + strand, within CCNA_02300at 2447.174 kb on + strand, within CCNA_02300at 2447.318 kb on - strand, within CCNA_02300at 2447.415 kb on + strandat 2447.457 kb on + strandat 2447.538 kb on - strand, within CCNA_02301at 2447.551 kb on + strand, within CCNA_02301at 2447.559 kb on - strand, within CCNA_02301at 2447.594 kb on + strand, within CCNA_02301at 2447.601 kb on + strand, within CCNA_02301at 2447.601 kb on + strand, within CCNA_02301at 2447.601 kb on + strand, within CCNA_02301at 2447.609 kb on - strand, within CCNA_02301at 2447.645 kb on + strand, within CCNA_02301at 2447.647 kb on - strand, within CCNA_02301at 2447.682 kb on + strand, within CCNA_02301at 2447.695 kb on + strand, within CCNA_02301at 2447.700 kb on + strand, within CCNA_02301at 2447.700 kb on + strand, within CCNA_02301at 2447.724 kb on + strand, within CCNA_02301at 2447.757 kb on + strand, within CCNA_02301at 2447.759 kb on - strand, within CCNA_02301at 2447.762 kb on + strand, within CCNA_02301at 2447.762 kb on + strand, within CCNA_02301at 2447.769 kb on + strand, within CCNA_02301at 2447.769 kb on + strand, within CCNA_02301at 2447.770 kb on - strand, within CCNA_02301at 2447.777 kb on - strand, within CCNA_02301at 2447.781 kb on - strand, within CCNA_02301at 2447.846 kb on - strand, within CCNA_02301at 2447.856 kb on - strand, within CCNA_02301at 2447.870 kb on + strand, within CCNA_02301at 2447.940 kb on - strand, within CCNA_02301at 2447.941 kb on + strand, within CCNA_02301

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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2,445,595 - CCNA_02298 0.82 +0.1
2,445,607 + CCNA_02298 0.84 -0.4
2,445,614 - CCNA_02298 0.84 +0.3
2,445,615 - CCNA_02298 0.85 +1.4
2,445,691 - +0.9
2,445,717 + +1.0
2,445,735 - -1.1
2,445,831 + -1.0
2,445,836 + -0.4
2,445,841 + -0.1
2,445,844 - -2.4
2,445,844 - -0.9
2,445,868 + -0.1
2,445,991 + CCNA_02299 0.24 -1.3
2,446,042 + CCNA_02299 0.31 -0.4
2,446,047 + CCNA_02299 0.32 -1.6
2,446,071 + CCNA_02299 0.35 -2.5
2,446,165 + CCNA_02299 0.49 -0.6
2,446,220 + CCNA_02299 0.56 -1.1
2,446,220 + CCNA_02299 0.56 -1.6
2,446,220 + CCNA_02299 0.56 -0.9
2,446,220 + CCNA_02299 0.56 -1.4
2,446,313 + CCNA_02299 0.69 -0.9
2,446,406 - CCNA_02299 0.83 -1.4
2,446,422 + CCNA_02299 0.85 +0.1
2,446,422 + CCNA_02299 0.85 -1.6
2,446,461 - -1.5
2,446,511 - -1.3
2,446,688 - CCNA_02300 0.18 -0.9
2,446,864 + CCNA_02300 0.38 -0.6
2,447,140 + CCNA_02300 0.69 +1.1
2,447,174 + CCNA_02300 0.73 -1.8
2,447,318 - CCNA_02300 0.89 -1.1
2,447,415 + +0.0
2,447,457 + -1.5
2,447,538 - CCNA_02301 0.20 -0.6
2,447,551 + CCNA_02301 0.22 +0.1
2,447,559 - CCNA_02301 0.23 -2.6
2,447,594 + CCNA_02301 0.29 -1.4
2,447,601 + CCNA_02301 0.30 +0.5
2,447,601 + CCNA_02301 0.30 +0.4
2,447,601 + CCNA_02301 0.30 +0.4
2,447,609 - CCNA_02301 0.31 -1.0
2,447,645 + CCNA_02301 0.37 +0.2
2,447,647 - CCNA_02301 0.38 -0.9
2,447,682 + CCNA_02301 0.43 +0.2
2,447,695 + CCNA_02301 0.45 -1.8
2,447,700 + CCNA_02301 0.46 -2.5
2,447,700 + CCNA_02301 0.46 -0.9
2,447,724 + CCNA_02301 0.50 -1.6
2,447,757 + CCNA_02301 0.55 -0.5
2,447,759 - CCNA_02301 0.56 -1.8
2,447,762 + CCNA_02301 0.56 -0.4
2,447,762 + CCNA_02301 0.56 -0.5
2,447,769 + CCNA_02301 0.57 +0.9
2,447,769 + CCNA_02301 0.57 +0.3
2,447,770 - CCNA_02301 0.57 -1.0
2,447,777 - CCNA_02301 0.59 -1.1
2,447,781 - CCNA_02301 0.59 -1.7
2,447,846 - CCNA_02301 0.70 -3.8
2,447,856 - CCNA_02301 0.71 -1.9
2,447,870 + CCNA_02301 0.74 +0.2
2,447,940 - CCNA_02301 0.85 -1.3
2,447,941 + CCNA_02301 0.85 -0.6

Or see this region's nucleotide sequence