Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02298 and CCNA_02299 are separated by 58 nucleotides CCNA_02299 and CCNA_02300 overlap by 4 nucleotides CCNA_02300 and CCNA_02301 overlap by 4 nucleotides CCNA_02301 and CCNA_02302 overlap by 4 nucleotides
CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762
_02298
CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528
_02299
CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418
_02300
CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032
_02301
CCNA_02302: CCNA_02302 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,448,029 to 2,448,739
_02302
Position (kb)
2446
2447
2448 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2445.595 kb on - strand, within CCNA_02298 at 2445.607 kb on + strand, within CCNA_02298 at 2445.614 kb on - strand, within CCNA_02298 at 2445.615 kb on - strand, within CCNA_02298 at 2445.691 kb on - strand at 2445.717 kb on + strand at 2445.735 kb on - strand at 2445.831 kb on + strand at 2445.836 kb on + strand at 2445.841 kb on + strand at 2445.844 kb on - strand at 2445.844 kb on - strand at 2445.868 kb on + strand at 2445.991 kb on + strand, within CCNA_02299 at 2446.042 kb on + strand, within CCNA_02299 at 2446.047 kb on + strand, within CCNA_02299 at 2446.071 kb on + strand, within CCNA_02299 at 2446.165 kb on + strand, within CCNA_02299 at 2446.220 kb on + strand, within CCNA_02299 at 2446.220 kb on + strand, within CCNA_02299 at 2446.220 kb on + strand, within CCNA_02299 at 2446.220 kb on + strand, within CCNA_02299 at 2446.313 kb on + strand, within CCNA_02299 at 2446.406 kb on - strand, within CCNA_02299 at 2446.422 kb on + strand, within CCNA_02299 at 2446.422 kb on + strand, within CCNA_02299 at 2446.461 kb on - strand at 2446.511 kb on - strand at 2446.688 kb on - strand, within CCNA_02300 at 2446.864 kb on + strand, within CCNA_02300 at 2447.140 kb on + strand, within CCNA_02300 at 2447.174 kb on + strand, within CCNA_02300 at 2447.318 kb on - strand, within CCNA_02300 at 2447.415 kb on + strand at 2447.457 kb on + strand at 2447.538 kb on - strand, within CCNA_02301 at 2447.551 kb on + strand, within CCNA_02301 at 2447.559 kb on - strand, within CCNA_02301 at 2447.594 kb on + strand, within CCNA_02301 at 2447.601 kb on + strand, within CCNA_02301 at 2447.601 kb on + strand, within CCNA_02301 at 2447.601 kb on + strand, within CCNA_02301 at 2447.609 kb on - strand, within CCNA_02301 at 2447.645 kb on + strand, within CCNA_02301 at 2447.647 kb on - strand, within CCNA_02301 at 2447.682 kb on + strand, within CCNA_02301 at 2447.695 kb on + strand, within CCNA_02301 at 2447.700 kb on + strand, within CCNA_02301 at 2447.700 kb on + strand, within CCNA_02301 at 2447.724 kb on + strand, within CCNA_02301 at 2447.757 kb on + strand, within CCNA_02301 at 2447.759 kb on - strand, within CCNA_02301 at 2447.762 kb on + strand, within CCNA_02301 at 2447.762 kb on + strand, within CCNA_02301 at 2447.769 kb on + strand, within CCNA_02301 at 2447.769 kb on + strand, within CCNA_02301 at 2447.770 kb on - strand, within CCNA_02301 at 2447.777 kb on - strand, within CCNA_02301 at 2447.781 kb on - strand, within CCNA_02301 at 2447.846 kb on - strand, within CCNA_02301 at 2447.856 kb on - strand, within CCNA_02301 at 2447.870 kb on + strand, within CCNA_02301 at 2447.940 kb on - strand, within CCNA_02301 at 2447.941 kb on + strand, within CCNA_02301
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 2,445,595 - CCNA_02298 0.82 +0.1 2,445,607 + CCNA_02298 0.84 -0.4 2,445,614 - CCNA_02298 0.84 +0.3 2,445,615 - CCNA_02298 0.85 +1.4 2,445,691 - +0.9 2,445,717 + +1.0 2,445,735 - -1.1 2,445,831 + -1.0 2,445,836 + -0.4 2,445,841 + -0.1 2,445,844 - -2.4 2,445,844 - -0.9 2,445,868 + -0.1 2,445,991 + CCNA_02299 0.24 -1.3 2,446,042 + CCNA_02299 0.31 -0.4 2,446,047 + CCNA_02299 0.32 -1.6 2,446,071 + CCNA_02299 0.35 -2.5 2,446,165 + CCNA_02299 0.49 -0.6 2,446,220 + CCNA_02299 0.56 -1.1 2,446,220 + CCNA_02299 0.56 -1.6 2,446,220 + CCNA_02299 0.56 -0.9 2,446,220 + CCNA_02299 0.56 -1.4 2,446,313 + CCNA_02299 0.69 -0.9 2,446,406 - CCNA_02299 0.83 -1.4 2,446,422 + CCNA_02299 0.85 +0.1 2,446,422 + CCNA_02299 0.85 -1.6 2,446,461 - -1.5 2,446,511 - -1.3 2,446,688 - CCNA_02300 0.18 -0.9 2,446,864 + CCNA_02300 0.38 -0.6 2,447,140 + CCNA_02300 0.69 +1.1 2,447,174 + CCNA_02300 0.73 -1.8 2,447,318 - CCNA_02300 0.89 -1.1 2,447,415 + +0.0 2,447,457 + -1.5 2,447,538 - CCNA_02301 0.20 -0.6 2,447,551 + CCNA_02301 0.22 +0.1 2,447,559 - CCNA_02301 0.23 -2.6 2,447,594 + CCNA_02301 0.29 -1.4 2,447,601 + CCNA_02301 0.30 +0.5 2,447,601 + CCNA_02301 0.30 +0.4 2,447,601 + CCNA_02301 0.30 +0.4 2,447,609 - CCNA_02301 0.31 -1.0 2,447,645 + CCNA_02301 0.37 +0.2 2,447,647 - CCNA_02301 0.38 -0.9 2,447,682 + CCNA_02301 0.43 +0.2 2,447,695 + CCNA_02301 0.45 -1.8 2,447,700 + CCNA_02301 0.46 -2.5 2,447,700 + CCNA_02301 0.46 -0.9 2,447,724 + CCNA_02301 0.50 -1.6 2,447,757 + CCNA_02301 0.55 -0.5 2,447,759 - CCNA_02301 0.56 -1.8 2,447,762 + CCNA_02301 0.56 -0.4 2,447,762 + CCNA_02301 0.56 -0.5 2,447,769 + CCNA_02301 0.57 +0.9 2,447,769 + CCNA_02301 0.57 +0.3 2,447,770 - CCNA_02301 0.57 -1.0 2,447,777 - CCNA_02301 0.59 -1.1 2,447,781 - CCNA_02301 0.59 -1.7 2,447,846 - CCNA_02301 0.70 -3.8 2,447,856 - CCNA_02301 0.71 -1.9 2,447,870 + CCNA_02301 0.74 +0.2 2,447,940 - CCNA_02301 0.85 -1.3 2,447,941 + CCNA_02301 0.85 -0.6
Or see this region's nucleotide sequence