Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01089

Experiment: D-Cellobiose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose (C)
1,193,605	-		CCNA_01087	0.46	+0.7
1,193,611	+		CCNA_01087	0.47	+1.0
1,193,612	+		CCNA_01087	0.47	+1.1
1,193,646	+		CCNA_01087	0.52	+1.7
1,193,646	+		CCNA_01087	0.52	+1.5
1,193,666	+		CCNA_01087	0.54	+0.6
1,193,674	-		CCNA_01087	0.56	-0.1
1,193,684	+		CCNA_01087	0.57	+0.9
1,193,689	+		CCNA_01087	0.58	+1.2
1,193,692	-		CCNA_01087	0.58	+2.2
1,193,694	+		CCNA_01087	0.58	+1.0
1,193,712	+		CCNA_01087	0.61	+0.2
1,193,720	-		CCNA_01087	0.62	-1.2
1,193,720	-		CCNA_01087	0.62	+0.1
1,193,752	-		CCNA_01087	0.66	-2.9
1,193,753	-		CCNA_01087	0.67	+0.8
1,193,773	+		CCNA_01087	0.69	+1.5
1,193,775	+		CCNA_01087	0.70	+1.3
1,193,775	+		CCNA_01087	0.70	+1.1
1,193,793	-		CCNA_01087	0.72	-0.8
1,193,832	-		CCNA_01087	0.78	-0.4
1,193,903	+		CCNA_01087	0.87	+0.9
1,193,903	+		CCNA_01087	0.87	+1.6
1,193,906	-		CCNA_01087	0.88	-1.6
1,193,906	-		CCNA_01087	0.88	-2.1
1,193,926	-				+1.2
1,193,994	-				-0.2
1,193,994	-				-1.8
1,193,996	-				+0.2
1,194,007	+				+2.5
1,194,015	-				-0.2
1,194,017	+				+0.9
1,194,017	+				+0.3
1,194,018	+				-0.2
1,194,024	-				+0.9
1,194,034	-				+2.8
1,194,039	-				+1.0
1,194,089	+		CCNA_01088	0.12	+0.8
1,194,099	+		CCNA_01088	0.13	+0.0
1,194,100	-		CCNA_01088	0.14	+1.3
1,194,112	-		CCNA_01088	0.16	+1.7
1,194,144	+		CCNA_01088	0.22	-1.4
1,194,152	-		CCNA_01088	0.23	+0.3
1,194,152	-		CCNA_01088	0.23	+2.2
1,194,170	+		CCNA_01088	0.27	-1.2
1,194,178	-		CCNA_01088	0.28	+1.4
1,194,178	-		CCNA_01088	0.28	+0.7
1,194,178	-		CCNA_01088	0.28	+1.1
1,194,178	-		CCNA_01088	0.28	+0.9
1,194,312	-		CCNA_01088	0.54	+1.0
1,194,318	-		CCNA_01088	0.55	+1.3
1,194,330	+		CCNA_01088	0.57	+0.3
1,194,378	+		CCNA_01088	0.66	-1.9
1,194,381	-		CCNA_01088	0.67	+0.7
1,194,464	+		CCNA_01088	0.83	-0.1
1,194,468	+		CCNA_01088	0.83	+1.0
1,194,487	-		CCNA_01088	0.87	+0.3
1,194,524	-				+0.1
1,194,610	+				-0.7
1,194,634	+				+0.3
1,194,673	+				+0.9
1,194,724	+				-0.2
1,194,725	-				+0.1
1,194,740	-				+1.1
1,194,750	+				+0.7
1,194,760	+				-1.9
1,194,760	+				-1.8
1,194,768	-				+0.3
1,194,770	+				-0.7
1,194,770	+				+0.2
1,194,776	+		CCNA_01089	0.10	+0.4
1,194,776	+		CCNA_01089	0.10	+0.5
1,194,784	-		CCNA_01089	0.11	+0.1
1,194,800	-		CCNA_01089	0.12	-1.1
1,194,823	-		CCNA_01089	0.13	+0.1
1,194,854	+		CCNA_01089	0.15	+0.4
1,194,931	+		CCNA_01089	0.19	+0.8
1,194,945	-		CCNA_01089	0.20	+1.0
1,194,982	+		CCNA_01089	0.22	-0.5
1,194,989	+		CCNA_01089	0.23	+0.5
1,194,989	+		CCNA_01089	0.23	-1.3
1,195,000	+		CCNA_01089	0.23	-0.1
1,195,001	-		CCNA_01089	0.23	+0.3
1,195,010	+		CCNA_01089	0.24	-1.4
1,195,018	-		CCNA_01089	0.24	+1.1
1,195,069	-		CCNA_01089	0.27	+1.1
1,195,082	-		CCNA_01089	0.28	-0.1
1,195,097	+		CCNA_01089	0.29	-1.3
1,195,105	-		CCNA_01089	0.30	+1.8
1,195,105	-		CCNA_01089	0.30	-1.4
1,195,105	-		CCNA_01089	0.30	+1.2
1,195,105	-		CCNA_01089	0.30	-0.1
1,195,161	+		CCNA_01089	0.33	+0.2
1,195,175	-		CCNA_01089	0.34	+0.1
1,195,183	-		CCNA_01089	0.34	-0.1
1,195,187	+		CCNA_01089	0.34	-0.1
1,195,187	+		CCNA_01089	0.34	-1.4
1,195,187	+		CCNA_01089	0.34	-0.8
1,195,187	+				+1.1
1,195,194	-		CCNA_01089	0.35	+0.4
1,195,194	-		CCNA_01089	0.35	+0.3
1,195,195	-		CCNA_01089	0.35	+0.3
1,195,195	-		CCNA_01089	0.35	-0.3
1,195,195	-		CCNA_01089	0.35	+0.5
1,195,195	-		CCNA_01089	0.35	+1.0
1,195,195	-		CCNA_01089	0.35	+0.6
1,195,195	-		CCNA_01089	0.35	+2.2
1,195,195	-		CCNA_01089	0.35	-0.1
1,195,195	-		CCNA_01089	0.35	+0.2
1,195,202	-		CCNA_01089	0.35	-1.4
1,195,226	+		CCNA_01089	0.37	-1.7
1,195,243	+		CCNA_01089	0.38	-1.4
1,195,273	+		CCNA_01089	0.40	-0.4
1,195,291	+		CCNA_01089	0.41	+0.7
1,195,346	-		CCNA_01089	0.44	+1.0
1,195,400	+		CCNA_01089	0.47	-0.8
1,195,401	-		CCNA_01089	0.47	+2.6
1,195,401	-		CCNA_01089	0.47	-0.8
1,195,426	-		CCNA_01089	0.49	-0.9
1,195,459	-		CCNA_01089	0.51	+1.1
1,195,459	-		CCNA_01089	0.51	-0.9
1,195,499	-		CCNA_01089	0.53	+0.7
1,195,499	-		CCNA_01089	0.53	+0.8
1,195,517	-		CCNA_01089	0.54	+0.0
1,195,517	-		CCNA_01089	0.54	+0.7
1,195,625	-		CCNA_01089	0.60	+0.1
1,195,656	-		CCNA_01089	0.62	+1.5
1,195,661	-		CCNA_01089	0.62	+1.4
1,195,683	+		CCNA_01089	0.64	+0.5
1,195,702	+		CCNA_01089	0.65	-1.1
1,195,702	+		CCNA_01089	0.65	-0.0
1,195,702	+		CCNA_01089	0.65	-0.6
1,195,702	+		CCNA_01089	0.65	-0.4
1,195,710	-		CCNA_01089	0.65	+0.8
1,195,710	-		CCNA_01089	0.65	+1.8
1,195,710	-		CCNA_01089	0.65	+0.6
1,195,740	+		CCNA_01089	0.67	+0.2
1,195,740	+		CCNA_01089	0.67	+1.2
1,195,742	-		CCNA_01089	0.67	+0.9
1,195,774	-		CCNA_01089	0.69	+1.4
1,195,798	-		CCNA_01089	0.71	-0.4
1,195,811	+		CCNA_01089	0.71	+0.2
1,195,820	+		CCNA_01089	0.72	+1.9
1,195,835	+		CCNA_01089	0.73	-0.4
1,195,845	+		CCNA_01089	0.73	-1.3
1,195,853	-		CCNA_01089	0.74	+1.2
1,195,863	-		CCNA_01089	0.74	+0.7
1,195,863	-		CCNA_01089	0.74	+0.7
1,195,863	-		CCNA_01089	0.74	+1.1
1,195,870	+		CCNA_01089	0.75	-1.6
1,195,892	+		CCNA_01089	0.76	+1.0
1,195,911	-		CCNA_01089	0.77	+1.8
1,195,911	-		CCNA_01089	0.77	+0.4
1,196,001	-		CCNA_01089	0.83	+1.4
1,196,036	-		CCNA_01089	0.85	+0.7
1,196,062	-		CCNA_01089	0.86	+1.2
1,196,098	+		CCNA_01089	0.88	-0.7
1,196,107	-		CCNA_01089	0.89	+0.5
1,196,130	-				+1.4
1,196,130	-				+0.8
1,196,131	-				+1.0
1,196,188	-				+0.1
1,196,289	+				-0.8
1,196,321	-				+0.6
1,196,352	-				+1.4
1,196,358	-				+0.8
1,196,358	-				+1.0
1,196,384	+				-2.0
1,196,391	+				-0.6
1,196,392	+				+1.1
1,196,398	+				-1.1
1,196,407	+				+0.5
1,196,410	-				+0.8
1,196,436	-		CCNA_01090	0.11	+2.0
1,196,438	+		CCNA_01090	0.11	-0.1
1,196,438	+		CCNA_01090	0.11	-1.2
1,196,446	-		CCNA_01090	0.11	+1.3
1,196,446	-		CCNA_01090	0.11	+1.2
1,196,446	-		CCNA_01090	0.11	+1.2
1,196,454	-		CCNA_01090	0.12	+1.1
1,196,457	+		CCNA_01090	0.12	-1.1
1,196,478	+		CCNA_01090	0.14	-2.0
1,196,482	-		CCNA_01090	0.14	+0.8
1,196,557	-		CCNA_01090	0.20	+0.1
1,196,579	+		CCNA_01090	0.21	+1.5
1,196,587	-		CCNA_01090	0.22	+0.9
1,196,587	-		CCNA_01090	0.22	+0.9
1,196,685	+		CCNA_01090	0.29	-1.6
1,196,731	+		CCNA_01090	0.32	-2.4
1,196,739	-		CCNA_01090	0.33	+0.4
1,196,739	-		CCNA_01090	0.33	+0.8
1,196,776	+		CCNA_01090	0.36	-0.0
1,196,784	-		CCNA_01090	0.36	+2.0
1,196,784	-		CCNA_01090	0.36	+0.5
1,196,799	+		CCNA_01090	0.37	+1.1
1,196,808	-		CCNA_01090	0.38	+0.2
1,196,818	-		CCNA_01090	0.39	+0.3
1,196,818	-		CCNA_01090	0.39	+1.4
1,196,834	+		CCNA_01090	0.40	-1.0
1,196,865	+		CCNA_01090	0.42	+1.3
1,196,866	+		CCNA_01090	0.42	-3.2
1,196,866	+		CCNA_01090	0.42	+0.3
1,196,866	+		CCNA_01090	0.42	-2.6
1,196,872	+		CCNA_01090	0.43	+0.0
1,196,873	-		CCNA_01090	0.43	+0.7
1,196,873	-		CCNA_01090	0.43	+0.7
1,196,874	-		CCNA_01090	0.43	-0.4
1,196,885	-		CCNA_01090	0.43	+0.7
1,196,894	+		CCNA_01090	0.44	-0.8
1,196,929	-		CCNA_01090	0.47	+1.9
1,196,948	-		CCNA_01090	0.48	+0.7
1,197,001	-		CCNA_01090	0.52	+1.1
1,197,003	-		CCNA_01090	0.52	+1.6
1,197,012	-		CCNA_01090	0.53	+0.6
1,197,014	-		CCNA_01090	0.53	-0.2
1,197,035	+		CCNA_01090	0.54	+1.2
1,197,043	-		CCNA_01090	0.55	+0.9
1,197,048	-		CCNA_01090	0.55	+1.7
1,197,048	-		CCNA_01090	0.55	+0.6
1,197,083	+		CCNA_01090	0.58	-1.6
1,197,129	-		CCNA_01090	0.61	-1.2
1,197,159	-		CCNA_01090	0.63	+1.6
1,197,179	+		CCNA_01090	0.65	-1.3
1,197,199	+		CCNA_01090	0.66	-1.3
1,197,219	+		CCNA_01090	0.68	-3.2
1,197,233	+		CCNA_01090	0.69	-0.7
1,197,261	-		CCNA_01090	0.71	+1.5
1,197,281	-		CCNA_01090	0.72	+0.6