Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15655

Experiment: R2A with nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 200 mM
3,943,316	+		CA265_RS15645	0.76	-2.1
3,943,317	-		CA265_RS15645	0.76	+0.1
3,943,331	+		CA265_RS15645	0.77	-0.3
3,943,408	+		CA265_RS15645	0.83	-0.5
3,943,437	-		CA265_RS15645	0.86	+0.9
3,943,438	+		CA265_RS15645	0.86	-2.6
3,943,439	-		CA265_RS15645	0.86	+0.7
3,943,450	-		CA265_RS15645	0.87	-0.5
3,943,463	+		CA265_RS15645	0.88	+0.6
3,943,488	+		CA265_RS15645	0.89	-1.7
3,943,548	-				+0.1
3,943,548	-				+0.5
3,943,567	-				-0.1
3,943,665	+				+0.3
3,943,665	+				+0.5
3,943,666	-				-0.4
3,943,669	-				-0.1
3,943,695	+				+1.3
3,943,696	-				-0.6
3,943,710	+				-0.1
3,943,729	+		CA265_RS15650	0.13	+0.7
3,943,921	-		CA265_RS15650	0.45	+0.8
3,943,921	-		CA265_RS15650	0.45	+0.4
3,943,933	-		CA265_RS15650	0.47	-1.3
3,943,957	-		CA265_RS15650	0.51	+0.4
3,944,074	+		CA265_RS15650	0.71	-0.6
3,944,075	-		CA265_RS15650	0.71	-0.5
3,944,075	-		CA265_RS15650	0.71	+0.5
3,944,206	-				+0.1
3,944,230	+				-0.7
3,944,230	+				-0.0
3,944,275	-				+0.6
3,944,306	-				-0.2
3,944,313	+				+0.4
3,944,441	+				-1.3
3,944,453	-				-1.3
3,944,483	-		CA265_RS15655	0.10	-1.7
3,944,698	+		CA265_RS15655	0.23	-0.4
3,944,698	+		CA265_RS15655	0.23	-1.6
3,944,702	+		CA265_RS15655	0.23	+0.8
3,944,703	-		CA265_RS15655	0.23	-0.7
3,944,707	+		CA265_RS15655	0.23	-1.0
3,944,712	+		CA265_RS15655	0.24	-0.2
3,944,712	+		CA265_RS15655	0.24	+0.7
3,944,742	+		CA265_RS15655	0.26	+0.9
3,944,743	-		CA265_RS15655	0.26	-0.1
3,944,743	-		CA265_RS15655	0.26	-0.7
3,944,745	+		CA265_RS15655	0.26	+0.6
3,944,818	-		CA265_RS15655	0.30	+0.4
3,944,818	-		CA265_RS15655	0.30	-1.3
3,944,818	-		CA265_RS15655	0.30	-0.4
3,944,822	+		CA265_RS15655	0.30	+0.1
3,944,823	-		CA265_RS15655	0.30	-0.1
3,944,848	+		CA265_RS15655	0.32	-0.0
3,944,875	+		CA265_RS15655	0.33	+0.4
3,944,875	+		CA265_RS15655	0.33	-0.9
3,944,876	-		CA265_RS15655	0.34	+0.9
3,944,895	-		CA265_RS15655	0.35	-0.3
3,944,904	-		CA265_RS15655	0.35	+0.1
3,944,947	+		CA265_RS15655	0.38	+0.2
3,944,948	-		CA265_RS15655	0.38	-0.1
3,944,959	+		CA265_RS15655	0.38	+0.7
3,944,959	+		CA265_RS15655	0.38	-0.2
3,944,989	-		CA265_RS15655	0.40	-0.3
3,945,119	-		CA265_RS15655	0.48	-0.4
3,945,144	+		CA265_RS15655	0.49	+0.4
3,945,161	-		CA265_RS15655	0.50	-0.2
3,945,173	-		CA265_RS15655	0.51	-0.3
3,945,203	+		CA265_RS15655	0.53	-1.4
3,945,255	-		CA265_RS15655	0.56	+0.7
3,945,258	-		CA265_RS15655	0.56	-0.5
3,945,258	-		CA265_RS15655	0.56	-0.4
3,945,259	+		CA265_RS15655	0.56	-0.7
3,945,260	-		CA265_RS15655	0.56	+0.4
3,945,260	-		CA265_RS15655	0.56	+0.1
3,945,270	-		CA265_RS15655	0.57	-0.4
3,945,317	+		CA265_RS15655	0.60	-0.7
3,945,318	-		CA265_RS15655	0.60	-0.3
3,945,321	-		CA265_RS15655	0.60	-0.8
3,945,369	+		CA265_RS15655	0.63	-1.0
3,945,496	+		CA265_RS15655	0.70	+0.0
3,945,508	+		CA265_RS15655	0.71	+0.3
3,945,509	-		CA265_RS15655	0.71	-0.5
3,945,509	-		CA265_RS15655	0.71	-0.7
3,945,510	+		CA265_RS15655	0.71	-1.9
3,945,510	+		CA265_RS15655	0.71	+0.0
3,945,533	-		CA265_RS15655	0.73	-0.6
3,945,533	-		CA265_RS15655	0.73	-0.0
3,945,533	-		CA265_RS15655	0.73	-1.0
3,945,533	-		CA265_RS15655	0.73	+0.5
3,945,533	-		CA265_RS15655	0.73	-0.5
3,945,541	+		CA265_RS15655	0.73	-0.1
3,945,616	-		CA265_RS15655	0.77	+0.7
3,945,644	-		CA265_RS15655	0.79	-0.1
3,945,714	-		CA265_RS15655	0.83	-1.5
3,945,716	-		CA265_RS15655	0.83	+0.1
3,945,734	-		CA265_RS15655	0.84	-0.4
3,945,745	+		CA265_RS15655	0.85	+0.5
3,945,746	-		CA265_RS15655	0.85	-1.7
3,945,746	-		CA265_RS15655	0.85	+0.4
3,945,749	-		CA265_RS15655	0.85	-0.2
3,945,785	+		CA265_RS15655	0.88	-1.7
3,945,786	-		CA265_RS15655	0.88	-1.0
3,945,796	-		CA265_RS15655	0.88	+0.1
3,945,804	+		CA265_RS15655	0.89	+0.3
3,945,820	+		CA265_RS15655	0.90	-0.2
3,945,869	+				+1.2
3,945,869	+				-0.0
3,945,898	+				+0.3
3,945,899	-				+0.5
3,945,899	-				-0.2
3,945,899	-				+0.6
3,945,900	+				+0.3
3,945,901	-				+0.7
3,945,930	+				-1.1
3,945,930	+				+0.4
3,945,951	-				-1.0
3,946,123	+				-0.7
3,946,123	+				-0.2
3,946,123	+				+0.0
3,946,123	+				-0.4
3,946,170	+				+1.0
3,946,175	+				+0.1
3,946,207	+				-0.7
3,946,207	+				+0.5
3,946,208	-				-0.4
3,946,229	+				+0.2
3,946,229	+				-0.3
3,946,229	+				-0.2
3,946,230	-				+0.9
3,946,235	-				+0.3
3,946,318	-				+0.6
3,946,319	+				+0.6
3,946,322	+				-1.4
3,946,349	-				+0.3
3,946,402	+		CA265_RS15660	0.12	+0.1
3,946,405	+		CA265_RS15660	0.12	-0.2
3,946,406	-		CA265_RS15660	0.12	+1.0
3,946,423	+		CA265_RS15660	0.12	-0.8
3,946,424	-		CA265_RS15660	0.12	+0.1
3,946,470	-		CA265_RS15660	0.14	+0.1
3,946,470	-		CA265_RS15660	0.14	-0.5
3,946,477	-		CA265_RS15660	0.14	-0.2
3,946,562	+		CA265_RS15660	0.16	+0.1
3,946,563	-		CA265_RS15660	0.16	-2.0
3,946,615	-		CA265_RS15660	0.18	+0.2
3,946,627	-		CA265_RS15660	0.18	+0.6
3,946,632	+		CA265_RS15660	0.18	-0.3
3,946,637	+		CA265_RS15660	0.19	+0.6
3,946,665	+		CA265_RS15660	0.19	+0.8
3,946,665	+		CA265_RS15660	0.19	-0.1
3,946,692	-		CA265_RS15660	0.20	+0.7
3,946,695	+		CA265_RS15660	0.20	-0.6
3,946,707	+		CA265_RS15660	0.21	+0.2
3,946,799	+		CA265_RS15660	0.24	+0.2
3,946,814	+		CA265_RS15660	0.24	-0.8
3,946,830	+		CA265_RS15660	0.24	-0.3
3,946,831	-		CA265_RS15660	0.25	-0.5
3,946,831	-		CA265_RS15660	0.25	-0.1
3,946,863	+		CA265_RS15660	0.25	-0.6
3,946,864	-		CA265_RS15660	0.26	-3.1
3,946,888	+		CA265_RS15660	0.26	-1.0
3,946,889	-		CA265_RS15660	0.26	-0.7
3,946,929	+		CA265_RS15660	0.27	-0.1
3,946,944	+		CA265_RS15660	0.28	+0.4
3,946,977	+		CA265_RS15660	0.29	+0.5
3,946,980	+		CA265_RS15660	0.29	+0.9
3,946,980	+		CA265_RS15660	0.29	+0.3
3,946,981	-		CA265_RS15660	0.29	+0.3