Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00250

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00240 and CA265_RS00245 are separated by 78 nucleotidesCA265_RS00245 and CA265_RS00250 are separated by 203 nucleotidesCA265_RS00250 and CA265_RS00255 are separated by 158 nucleotides CA265_RS00240: CA265_RS00240 - histidine kinase, at 57,873 to 59,003 _RS00240 CA265_RS00245: CA265_RS00245 - hypothetical protein, at 59,082 to 59,444 _RS00245 CA265_RS00250: CA265_RS00250 - oxidoreductase, at 59,648 to 60,442 _RS00250 CA265_RS00255: CA265_RS00255 - alpha/beta hydrolase, at 60,601 to 61,422 _RS00255 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1at 58.660 kb on + strand, within CA265_RS00240at 58.689 kb on + strand, within CA265_RS00240at 58.716 kb on + strand, within CA265_RS00240at 58.716 kb on + strand, within CA265_RS00240at 58.833 kb on - strand, within CA265_RS00240at 58.855 kb on + strand, within CA265_RS00240at 58.913 kb on + strandat 59.010 kb on - strandat 59.020 kb on + strandat 59.020 kb on + strandat 59.126 kb on + strand, within CA265_RS00245at 59.135 kb on + strand, within CA265_RS00245at 59.186 kb on + strand, within CA265_RS00245at 59.187 kb on - strand, within CA265_RS00245at 59.227 kb on + strand, within CA265_RS00245at 59.240 kb on - strand, within CA265_RS00245at 59.240 kb on - strand, within CA265_RS00245at 59.258 kb on + strand, within CA265_RS00245at 59.285 kb on - strand, within CA265_RS00245at 59.337 kb on + strand, within CA265_RS00245at 59.349 kb on - strand, within CA265_RS00245at 59.374 kb on + strand, within CA265_RS00245at 59.443 kb on - strandat 59.443 kb on - strandat 59.468 kb on - strandat 59.468 kb on - strandat 59.480 kb on + strandat 59.520 kb on - strandat 59.594 kb on - strandat 59.655 kb on + strandat 59.656 kb on - strandat 59.656 kb on - strandat 59.669 kb on - strandat 59.681 kb on - strandat 59.692 kb on + strandat 59.748 kb on + strand, within CA265_RS00250at 59.779 kb on - strand, within CA265_RS00250at 59.779 kb on - strand, within CA265_RS00250at 59.912 kb on - strand, within CA265_RS00250at 60.107 kb on + strand, within CA265_RS00250at 60.118 kb on + strand, within CA265_RS00250at 60.119 kb on - strand, within CA265_RS00250at 60.276 kb on + strand, within CA265_RS00250at 60.277 kb on - strand, within CA265_RS00250at 60.292 kb on + strand, within CA265_RS00250at 60.307 kb on + strand, within CA265_RS00250at 60.365 kb on + strandat 60.370 kb on - strandat 60.370 kb on - strandat 60.411 kb on + strandat 60.412 kb on - strandat 60.423 kb on + strandat 60.470 kb on - strandat 60.470 kb on - strandat 60.470 kb on - strandat 60.509 kb on + strandat 60.510 kb on - strandat 60.585 kb on - strandat 60.606 kb on + strandat 60.607 kb on - strandat 60.666 kb on + strandat 60.693 kb on - strand, within CA265_RS00255at 60.743 kb on - strand, within CA265_RS00255at 60.818 kb on - strand, within CA265_RS00255at 60.818 kb on - strand, within CA265_RS00255at 60.869 kb on + strand, within CA265_RS00255at 60.870 kb on - strand, within CA265_RS00255at 60.910 kb on + strand, within CA265_RS00255at 60.911 kb on - strand, within CA265_RS00255at 60.957 kb on + strand, within CA265_RS00255at 60.975 kb on - strandat 61.020 kb on - strand, within CA265_RS00255at 61.032 kb on - strand, within CA265_RS00255at 61.042 kb on - strand, within CA265_RS00255at 61.042 kb on - strand, within CA265_RS00255at 61.097 kb on - strand, within CA265_RS00255at 61.098 kb on + strand, within CA265_RS00255at 61.098 kb on + strand, within CA265_RS00255at 61.099 kb on - strand, within CA265_RS00255at 61.181 kb on - strand, within CA265_RS00255at 61.181 kb on - strand, within CA265_RS00255at 61.191 kb on + strand, within CA265_RS00255at 61.228 kb on - strand, within CA265_RS00255at 61.235 kb on + strand, within CA265_RS00255at 61.235 kb on + strand, within CA265_RS00255at 61.235 kb on + strand, within CA265_RS00255at 61.294 kb on - strand, within CA265_RS00255at 61.389 kb on - strandat 61.389 kb on - strandat 61.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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58,660 + CA265_RS00240 0.70 +0.5
58,689 + CA265_RS00240 0.72 +0.1
58,716 + CA265_RS00240 0.75 +0.3
58,716 + CA265_RS00240 0.75 -0.9
58,833 - CA265_RS00240 0.85 -0.3
58,855 + CA265_RS00240 0.87 +1.3
58,913 + -0.9
59,010 - +0.3
59,020 + +0.3
59,020 + +0.5
59,126 + CA265_RS00245 0.12 -0.7
59,135 + CA265_RS00245 0.15 +0.4
59,186 + CA265_RS00245 0.29 -1.2
59,187 - CA265_RS00245 0.29 +0.1
59,227 + CA265_RS00245 0.40 -0.6
59,240 - CA265_RS00245 0.44 -0.6
59,240 - CA265_RS00245 0.44 +0.2
59,258 + CA265_RS00245 0.48 -0.9
59,285 - CA265_RS00245 0.56 -0.2
59,337 + CA265_RS00245 0.70 -0.3
59,349 - CA265_RS00245 0.74 -0.0
59,374 + CA265_RS00245 0.80 -0.1
59,443 - +0.8
59,443 - +0.6
59,468 - +0.2
59,468 - +0.2
59,480 + +0.7
59,520 - -0.1
59,594 - -0.2
59,655 + -0.9
59,656 - +0.4
59,656 - +0.1
59,669 - -0.7
59,681 - +1.6
59,692 + +0.4
59,748 + CA265_RS00250 0.13 +1.7
59,779 - CA265_RS00250 0.16 -0.6
59,779 - CA265_RS00250 0.16 +0.9
59,912 - CA265_RS00250 0.33 +0.4
60,107 + CA265_RS00250 0.58 +1.7
60,118 + CA265_RS00250 0.59 +0.0
60,119 - CA265_RS00250 0.59 -0.4
60,276 + CA265_RS00250 0.79 +1.0
60,277 - CA265_RS00250 0.79 -0.7
60,292 + CA265_RS00250 0.81 +0.6
60,307 + CA265_RS00250 0.83 +0.7
60,365 + +1.0
60,370 - +1.5
60,370 - -0.0
60,411 + -0.4
60,412 - +1.4
60,423 + -0.1
60,470 - -0.5
60,470 - +0.2
60,470 - -0.1
60,509 + -0.6
60,510 - +0.2
60,585 - +0.9
60,606 + +1.5
60,607 - +0.7
60,666 + -1.2
60,693 - CA265_RS00255 0.11 -0.1
60,743 - CA265_RS00255 0.17 +0.2
60,818 - CA265_RS00255 0.26 +0.8
60,818 - CA265_RS00255 0.26 -0.1
60,869 + CA265_RS00255 0.33 +0.3
60,870 - CA265_RS00255 0.33 -1.0
60,910 + CA265_RS00255 0.38 +1.5
60,911 - CA265_RS00255 0.38 -0.6
60,957 + CA265_RS00255 0.43 -0.3
60,975 - -0.1
61,020 - CA265_RS00255 0.51 -0.0
61,032 - CA265_RS00255 0.52 +0.7
61,042 - CA265_RS00255 0.54 -1.1
61,042 - CA265_RS00255 0.54 +0.1
61,097 - CA265_RS00255 0.60 +0.8
61,098 + CA265_RS00255 0.60 +0.2
61,098 + CA265_RS00255 0.60 -0.1
61,099 - CA265_RS00255 0.61 +0.3
61,181 - CA265_RS00255 0.71 +0.4
61,181 - CA265_RS00255 0.71 -0.2
61,191 + CA265_RS00255 0.72 +0.9
61,228 - CA265_RS00255 0.76 +0.1
61,235 + CA265_RS00255 0.77 +0.6
61,235 + CA265_RS00255 0.77 -2.6
61,235 + CA265_RS00255 0.77 -0.3
61,294 - CA265_RS00255 0.84 -0.2
61,389 - +0.6
61,389 - -0.8
61,393 - +0.4

Or see this region's nucleotide sequence