Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33935

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33925 and BPHYT_RS33930 are separated by 1 nucleotidesBPHYT_RS33930 and BPHYT_RS33935 are separated by 24 nucleotidesBPHYT_RS33935 and BPHYT_RS33940 are separated by 4 nucleotidesBPHYT_RS33940 and BPHYT_RS33945 are separated by 3 nucleotidesBPHYT_RS33945 and BPHYT_RS33950 are separated by 157 nucleotides BPHYT_RS33925: BPHYT_RS33925 - hypothetical protein, at 3,203,786 to 3,204,058 _RS33925 BPHYT_RS33930: BPHYT_RS33930 - succinate dehydrogenase iron-sulfur subunit, at 3,204,060 to 3,204,764 _RS33930 BPHYT_RS33935: BPHYT_RS33935 - succinate dehydrogenase flavoprotein subunit, at 3,204,789 to 3,206,564 _RS33935 BPHYT_RS33940: BPHYT_RS33940 - succinate dehydrogenase, at 3,206,569 to 3,206,937 _RS33940 BPHYT_RS33945: BPHYT_RS33945 - succinate dehydrogenase, at 3,206,941 to 3,207,357 _RS33945 BPHYT_RS33950: BPHYT_RS33950 - GntR family transcriptional regulator, at 3,207,515 to 3,208,315 _RS33950 Position (kb) 3204 3205 3206 3207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3207.376 kb on - strandat 3207.445 kb on - strandat 3207.522 kb on - strandat 3207.537 kb on + strandat 3207.537 kb on + strandat 3207.537 kb on + strandat 3207.538 kb on - strandat 3207.538 kb on - strandat 3207.538 kb on - strandat 3207.555 kb on + strandat 3207.555 kb on + strandat 3207.556 kb on - strandat 3207.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,207,376 - -2.1
3,207,445 - +0.3
3,207,522 - -0.0
3,207,537 + -4.3
3,207,537 + -3.4
3,207,537 + -1.5
3,207,538 - -0.1
3,207,538 - +0.4
3,207,538 - +0.1
3,207,555 + -3.0
3,207,555 + -2.1
3,207,556 - +0.0
3,207,556 - -0.7

Or see this region's nucleotide sequence